Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well

International Journal of Systematic Bacteriology

Volumn 49, Issue 2, 1999, Pages 367-375

  Stan Lotter, Helga ^a  

^a Institute of Microbiology and Genetics Vienna   (Austria)

Author keywords

16S rRNA gene analysis; Fourier transformed IR spectroscopy; Lipopolysaccharide; Marinobacter aquaeolei; Pseudomonas nautica

Indexed keywords

BACTERIUM LIPOPOLYSACCHARIDE; FATTY ACID;

ARTICLE; BACTERIAL GROWTH; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; DNA SEQUENCE; FLAGELLUM; GENETIC ANALYSIS; GRAM NEGATIVE BACTERIUM; GROWTH RATE; HALOPHILIC BACTERIUM; INFRARED SPECTROMETRY; MARINOBACTER AQUAEOLEI; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

BACTERIAL PROTEINS; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GRAM-NEGATIVE BACTERIA; LIPOPOLYSACCHARIDES; MOLECULAR SEQUENCE DATA; PETROLEUM; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; VIETNAM;

BACTERIA (MICROORGANISMS); MARINOBACTER; MARINOBACTER AQUAEOLEI; MARINOBACTER HYDROCARBONOCLASTICUS; MARINOBACTER SP.; NEGIBACTERIA; PSEUDOMONAS;

EID: 0032935779     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (52)

1. Adkins, J. P., Madigan, M. T., Mandelco, L., Woese, C. R. & Tanner, R. S. (1993). Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine. Int J Syst Bacterial 43, 514-520.
2. American Petroleum Institute Research Publication 38 (1975). Recommended Practice for Biological Analysis of Subsurface Injection Waters, 3rd edn, pp. 1-7. Dallas, TX: American Petroleum Institute.
3. Balkwill, D. L., Drake, G. R., Reeves, R. H. & 7 other authors (1997). Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov. and Sphingomonas stygia sp. nov. Int J Syst Bacterial 47, 191-201.
4. Baumann, L., Baumann, P., Mandel, M. & Allen, R. D. (1972). Taxonomy of aerobic marine eubacteria. J Bacterial 110, 402-429.
5. Bernard, F. P., Connan, J. & Magot, M. (1992). Indigenous microorganisms in connate water of many oil fields: a new tool in exploration and production techniques. In 67th Annual Technical Conference and Exhibition of Society of Petroleum Engineers, Washington, DC, pp. 467-476. Richardson, TX: Society of Petroleum Engineers.
6. Bhupathiraju, V. K., Mclnerney, M. J. & Knapp, R. M. (1993). Pretest studies for a microbially enhanced oil recovery field pilot in a hypersaline oil reservoir. Geomicrobiol J 11, 19-34.
7. Cashion, P., Hodler-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
8. Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265-309. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
9. Dang, P. N., Dang, T. C. H., Lai, T. H. & Stan-Lotter, H. (1996). Desulfovibrio \ietnamensis sp. nov., a halophilic sulfate-reducing bacterium from Vietnamese oil fields. Anaerobe 1, 385-392.
10. De Ley, J. (1992). The Proteobacteria: ribosomal RNA cistron similarities and bacterial taxonomy. In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, vol. 2, 2nd edn, pp. 2111-2140. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
11. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridisation from renaturation rates. Enr J Biochem 12, 133-142.
12. Denner, E. B. M., McGenity, T. J., Busse, H.-J., Wanner, G., Grant, W. D. & Stan-Lotter, H. (1994). Halococcus salifodinac sp. nov., an archaeal isolate from an Austrian salt mine. Int J Syst Bacterial 44, 774-780.
13. De Vos, P., Van Landshoot, A., Segers, P. & 9 other authors (1989). Genotypic relationships and taxonomic location of unclassified Pseudomonas and Pseudomonas-like strains by deoxyribonucleic acid : ribosomal ribonucleic acid hybridizations. Int J Syst Bacterial 39, 35-49.
14. Escara, J. F. & Hutton, J. R. (1980). Thermal stability and renaturation of DNA in dimethylsulphoxide solutions: acceleration of renaturation rate. Biopolymers 19, 1315-1327.
15. Felsenstein, J. (1993). PHYLIP (Phylogeny Inference Package), version 3.5.1. Department of Genetics, University of Washington, Seattle, WA, USA.
16. Gauthier, M. J., Lafay, B., Christen, R., Fernandez, L., Acquaviva, M., Bonin, P. & Bertrand, J.-C. (1992). Marinobacter hydrocarbonoclasticiis gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int J Syst Bacterial 42, 568-576.
17. Helm, D., Labischinski, H., Schallehn, G. & Naumann, D. (1991a). Classification and identification of bacteria by Fourier-transform infrared spectroscopy. J Gen Microbiol 137, 69-79.
18. Helm, D., Labischinski, H. & Naumann, D. (1991b). Elaboration of a procedure for identification of bacteria using Fourier-transform IR spectral libraries: a stepwise correlation approach. J Microbiol Methods 14, 127-142.
19. Humble, M. W., King, A. & Philips, I. (1977). API ZYM, a simple rapid system for the detection of bacterial enzymes. J Clin Pathol 30, 275-277.
20. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrometric determination of DNA hybridisation from renaturation rates. Syst Appl Microbiol 4, 184-192.
21. Jackman, P. J. H. (1987). Microbial systematics based on electrophoretic whole-cell protein patterns. In Methods in Microbiology, vol. 19, Current Methods for Classification and Identification of Microorganisms, pp. 209-225. Edited by R. R. Colwell & R. Grigova. London: Academic Press.
22. Jahnke, K.-D. (1992). BASIC computer program for evaluation of spectroscopic DNA renaturation data from GILFORD Syst 2600 spectrometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
23. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
24. Kersters, K. & De Ley, J. (1980). Classification and identification of bacteria by electrophoresis of their proteins. In Microbiological Classification and Identification, pp. 273-297. Edited byM. Goodfellow & R. G. Board. New York: Academic Press.
25. Kita-Tsukamoto, K., Oyaizu, H., Nanba, K. & Simidu, U. (1993). Phylogenetic relationship of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences. Int J Syst Bacterial 43, 8-19.
26. Kushner, D. J. & Kamekura, M. (1988). Physiology of halophilic eubacteria. In Halophilic Bacteria, vol. I, pp. 109-140. Edited by F. Rodriguez-Valera. Boca Raton, FL: CRC Press.
27. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobiwn japonicum. Int J Syst Bacterial 38, 358-361.
28. Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of the bacteriophage T4. Nature 227, 684-685.
29. Maidak, B. L., Olsen, G. J., Larsen, N., McCaughey, M. J. & Woese, C. R. (1996). The ribosomal database project (RDP). Nucleic Acids Res 24, 82-85.
30. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
31. Naumann, D., Helm, D. & Labischinski, H. (1991). Microbiological characterizations by FT-IR spectroscopy. Nature 351, 81-82.
32. Palva, E.T. & Mäkelä, P.H. (1980). Lipopolysaccharide heterogeneity in Salmonella lypliiiiniriuin analyzed by sodium dodecyl sulfate polyacrylamide gel electrophoresis. Eur J Biochem 107, 137-143.
33. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
34. Rontani, J.-F., Gilewicz, M. J., Michotey, V. D., Zheng, T. L., Bonin, P. C. & Bertrand, J.-C. (1997). Aerobic and anaerobic metabolism of 6,10,14-trimethylpentadecan-2-one by a denitrifying bacterium isolated from marine sediments. Appl Environ Microbiol 63, 636-643.
35. Saitou, N. & Nei, M. (1987). The neighbor-joining method : a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
36. Seltmann, G., Voigt, W. & Beer, W. (1994). Application of physico-chemical typing methods for the epidemiological analysis of Salmonella enteritidis strains of phage type 25/17. Epidemiol Infect 113, 411-424.
37. Smibert,R. M. & Krieg, N. R.(1994). Phenotypic characterization. In Manual of Methods for General Microbiology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
38. Stan-Lotter, H. & Sanderson, K. E. (1981). Interactions of cations with membrane fractions of smooth and rough strains of Salmonella typhimuriwn and other Gram-negative bacteria. J Bacterial 146, 542-551.
39. Stan-Lotter, H., Lang, F. J., Jr 81 Hochstein, L. I. (1989). Electrophoresis and isoelectric focusing of whole cell and membrane proteins from the extremely halophilic archaebacteria. Appl Theor Electrophor 1, 147-153.
40. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
41. Tardy-Jacquenod, C., Magot, M., Laigret, F., Kaghad, M., Patel, B. K. C., Guezennec, J., Matheron, R. & Caumette, P. (1996a). Desulfovibrio gabonensis sp. nov., a new moderately halophilic sulfate-reducing bacterium isolated from an oil pipeline. Int J Syst Bacteriol 46, 710-715.
42. Tardy-Jacquenod, C., Caumette, P., Matheron, R., Lanau, C., Arnauld, O. & Magot, M. (1996b). Characterization of sulfate-reducing bacteria isolated from oil-field waters. Can J Microbiol 42, 259-266.
43. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofimdi. FEMS Microbiol Lett 66, 199-202.
44. Vandamme, P., Devriese, L. A., Pot, B., Kersters, K. & Melin, P. (1997). Streptococcus difficile is a nonhemolytic group B, type Ib streptococcus. Int J Syst Bacterial 47, 81-85.
45. Vandamme, P., Torck, U., Falsen, E., Pot, B., Goossens, H. & Kersters, K. (1998). Whole-cell protein electrophoretic analysis of viridans streptococci: evidence for heterogeneity among Streptococcus mitis biovars. Int J Syst Bacterial 48, 117-125.
46. Vauterin, L., Swings, J. & Kersters, K. (1993). Protein selectrophoresis and classification. In Handbook of New Bacterial Systematics, pp. 251-280. Edited by M. Goodfellow & A. G. O'Donnell. London: Academic Press.
47. Visuvanathan, S., Moss, V. S., Stanford, J. L., Hermon-Taylor, J. & McFadden, J. J. (1989). Simple enzymatic method for isolation of DNA from diverse bacteria. J Microbiol Methods 10, 59-64.
48. Vreeland, R. H. & Martin, E. L (1980). Growth characteristics, effects of temperature, and ion specificity of the halotolerant bacterium Halonwnas elongata. Can J Microbiol 26, 746-752.
49. Vreeland, R. H., Litchfield, C. D., Martin, E. L. & Elliot, E. (1980). Halonwnas elongata, a new genus and species of extremely salttolerant bacteria. Int J Syst Bacterial 30, 485-495.
50. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacterial 37, 463-464.
51. ZoBell, C. E. (1941). Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 4, 42-75.
52. Zumft, W. G. (1992). The denitrifying prokaryotes. In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, vol. 1, 2nd edn, pp. 554-582. Edited by A. Balows, H. G. Trüper, M. Dworkin, \V. Harder & K.-H. Schleifer. New York: Springer.