-
1
-
-
0030875847
-
Thermodynamics and NMR of internal G-T mismatches in DNA
-
Allawi, H. T., and J. SantaLucia, Jr. 1997. Thermodynamics and NMR of internal G-T mismatches in DNA. Biochemistry 36:10581-10594.
-
(1997)
Biochemistry
, vol.36
, pp. 10581-10594
-
-
Allawi, H.T.1
Santalucia Jr., J.2
-
2
-
-
0032562140
-
Nearest neighbor thermodynamic parameters for internal G-A mismatches in DNA
-
Allawi, H. T., and J. SantaLucia, Jr. 1998. Nearest neighbor thermodynamic parameters for internal G-A mismatches in DNA. Biochemistry 37:2170-2179.
-
(1998)
Biochemistry
, vol.37
, pp. 2170-2179
-
-
Allawi, H.T.1
Santalucia Jr., J.2
-
3
-
-
0032581024
-
Nearest-neighbor thermodynamics of internal A-C mismatches in DNA: Sequence dependence and pH effects
-
Allawi, H. T., and J. SantaLucia, Jr. 1998. Nearest-neighbor thermodynamics of internal A-C mismatches in DNA: sequence dependence and pH effects. Biochemistry 37:9435-9444.
-
(1998)
Biochemistry
, vol.37
, pp. 9435-9444
-
-
Allawi, H.T.1
Santalucia Jr., J.2
-
4
-
-
0032102940
-
Thermodynamics of internal C-T mismatches in DNA
-
Allawi, H. T., and J. SantaLucia, Jr. 1998. Thermodynamics of internal C-T mismatches in DNA. Nucleic Acids Res. 26:2694-2701.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2694-2701
-
-
Allawi, H.T.1
Santalucia Jr., J.2
-
5
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S., T. Madden, A. Schäffer, J. Zhang, W. Miller, and D. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schäffer, A.3
Zhang, J.4
Miller, W.5
Lipman, D.6
-
6
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
Derisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
7
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes, T. R., M. J. Marton, A. R. Jones, C. J. Roberts, R. Stoughton, C. D. Armour, H. A. Bennett, E. Coffey, H. Dai, Y. D. He, M. J. Kidd, A. M. King, M. R. Meyer, D. Slade, P. Y. Lum, S. B. Stepaniants, D. D. Shoemaker, D. Gachotte, K. Chakraburtty, J. Simon, M. Bard, and S. H. Friend. 2000. Functional discovery via a compendium of expression profiles. Cell 102:109-126.
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dai, H.9
He, Y.D.10
Kidd, M.J.11
King, A.M.12
Meyer, M.R.13
Slade, D.14
Lum, P.Y.15
Stepaniants, S.B.16
Shoemaker, D.D.17
Gachotte, D.18
Chakraburtty, K.19
Simon, J.20
Bard, M.21
Friend, S.H.22
more..
-
8
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes, T. R., M. Mao, A. R. Jones, J. Burchard, M. J. Marton, K. W. Shannon, S. M. Lefkowitz, M. Ziman, J. M. Schelter, M. R. Meyer, S. Kobayashi, C. Davis, H. Dai, Y. D. He, S. B. Stephaniants, G. Cavet, W. L. Walker, A. West, E. Coffey, D. D. Showmarker, R. Stoughton, A. P. Blanchard, S. H. Friend, and P. S. Linsley. 2001. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19:342-347.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
Kobayashi, S.11
Davis, C.12
Dai, H.13
He, Y.D.14
Stephaniants, S.B.15
Cavet, G.16
Walker, W.L.17
West, A.18
Coffey, E.19
Showmarker, D.D.20
Stoughton, R.21
Blanchard, A.P.22
Friend, S.H.23
Linsley, P.S.24
more..
-
9
-
-
0034189614
-
DNA microarray technology and antimicrobial drug discovery
-
Ivanov, I., C. Schaab, S. Planitzer, U. Teichmann, A. Machl, S. Theml, S. Meier-Ewert, B. Seizinger, and H. Loferer. 2000. DNA microarray technology and antimicrobial drug discovery. Pharmacogenomics 1:169-178.
-
(2000)
Pharmacogenomics
, vol.1
, pp. 169-178
-
-
Ivanov, I.1
Schaab, C.2
Planitzer, S.3
Teichmann, U.4
Machl, A.5
Theml, S.6
Meier-Ewert, S.7
Seizinger, B.8
Loferer, H.9
-
10
-
-
0345005029
-
Improved predictions of secondary structures for RNA
-
Jaeger, J., D. H. Turner, and M. Zuker. 1989. Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. USA 86:7706-7710.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 7706-7710
-
-
Jaeger, J.1
Turner, D.H.2
Zuker, M.3
-
11
-
-
0034669668
-
Assessment of the specificity and sensitivity of oligonucleotide (50mer) microarrays
-
Kane, M. D., T. A. Jatkoe, C. R. Stumpf, J. Lu, J. D. Thomas, and J. M. Madore. 2000. Assessment of the specificity and sensitivity of oligonucleotide (50mer) microarrays. Nucleic Acid Res. 28:4552-4557.
-
(2000)
Nucleic Acid Res.
, vol.28
, pp. 4552-4557
-
-
Kane, M.D.1
Jatkoe, T.A.2
Stumpf, C.R.3
Lu, J.4
Thomas, J.D.5
Madore, J.M.6
-
12
-
-
0037388447
-
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
-
Liu, Y., J. Zhou, M. Omelchenko, A. Beliaev, A. Venkateswaran, J. Stair, L. Wu, D. K. Thompson D. Xu, I. B. Rogozin, E. K. Gaidamakova, M. Zhai, K. S. Makarova, E. V. Koonin, and M. J. Daly. 2003. Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc. Natl. Acad. Sci. USA 100:4191-4196.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 4191-4196
-
-
Liu, Y.1
Zhou, J.2
Omelchenko, M.3
Beliaev, A.4
Venkateswaran, A.5
Stair, J.6
Wu, L.7
Thompson, D.K.8
Xu, D.9
Rogozin, I.B.10
Gaidamakova, E.K.11
Zhai, M.12
Makarova, K.S.13
Koonin, E.V.14
Daly, M.J.15
-
13
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D. J., H. Dong, M. C. Byrne, M. T. Follettie, M. V. Gallo, M. S. Chee, M. Mittmann, C. Wang, M. Kobayashi, H. Horton, and E. L. Brown. 1996. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14:1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
14
-
-
0032787871
-
Fast evaluation of internal loops in RNA secondary structure prediction
-
Lyngso, R. B., M. Zuker, and C. N. Pedersen. 1999. Fast evaluation of internal loops in RNA secondary structure prediction. Bioinformatics 15:440-445.
-
(1999)
Bioinformatics
, vol.15
, pp. 440-445
-
-
Lyngso, R.B.1
Zuker, M.2
Pedersen, C.N.3
-
15
-
-
7444234286
-
Getting the noise out of gene arrays
-
Marshall, E. 2004. Getting the noise out of gene arrays. Science 306:630-631.
-
(2004)
Science
, vol.306
, pp. 630-631
-
-
Marshall, E.1
-
16
-
-
0043123142
-
Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays
-
Nielsen, H. B., R. Wernersson, and S. Knudsen. 2003. Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays. Nucleic Acids Res. 31:3491-3496.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3491-3496
-
-
Nielsen, H.B.1
Wernersson, R.2
Knudsen, S.3
-
17
-
-
0037336455
-
Microarray in cancer: Research and application
-
Ochs, M. F., and A. K. Godwin. 2003. Microarray in cancer: research and application. BioTechniques 34:S4-S15.
-
(2003)
BioTechniques
, vol.34
-
-
Ochs, M.F.1
Godwin, A.K.2
-
18
-
-
0025900996
-
Thermodynamic study of internal loops in oligoribonucleotides: Symmetric loops are more stable than asymmetric loops
-
Peritz, A. E., R. Kierzek, N. Sugimoto, and D. H. Turner. 1991. Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops. Biochemistry 30:6428-6436.
-
(1991)
Biochemistry
, vol.30
, pp. 6428-6436
-
-
Peritz, A.E.1
Kierzek, R.2
Sugimoto, N.3
Turner, D.H.4
-
19
-
-
0036900945
-
Medical application of microarray technologies: A regulatory science perspective
-
Petricoin, E. F., J. L. Hackett, L. J. Lesko, R. K. Puri, S. I. Gutman, K. Chumakov, J. Woodcock, D. W. Feigal, Jr., K. C. Zoon, and F. D. Sistare. 2002. Medical application of microarray technologies: a regulatory science perspective. Nat. Genet. 32:474-479.
-
(2002)
Nat. Genet.
, vol.32
, pp. 474-479
-
-
Petricoin, E.F.1
Hackett, J.L.2
Lesko, L.J.3
Puri, R.K.4
Gutman, S.I.5
Chumakov, K.6
Woodcock, J.7
Feigal Jr., D.W.8
Zoon, K.C.9
Sistare, F.D.10
-
20
-
-
0033596964
-
Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A-A, C-C, G-G, and T-T mismatches
-
Peyret, N., P. A. Seneviratne, H. T. Allawi, and J. SantaLucia, Jr. 1999. Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A-A, C-C, G-G, and T-T mismatches. Biochemistry 38:3468-3477.
-
(1999)
Biochemistry
, vol.38
, pp. 3468-3477
-
-
Peyret, N.1
Seneviratne, P.A.2
Allawi, H.T.3
Santalucia Jr., J.4
-
21
-
-
0036615598
-
Optimization of oligonucleotide-based DNA microarrays
-
Relógio, A., C. Schwager, A. Richter, W. Ansorge, and A. Valcarcel. 2002. Optimization of oligonucleotide-based DNA microarrays. Nucleic Acid Res. 30:e51.
-
(2002)
Nucleic Acid Res.
, vol.30
-
-
Relógio, A.1
Schwager, C.2
Richter, A.3
Ansorge, W.4
Valcarcel, A.5
-
22
-
-
3242773890
-
Detection of biodegradation and biotransformation genes in microbial communities using 50-mer oligonucleotide microarrays
-
Rhee, S. K., X. Liu, L. Wu, S. C. Chong, X. Wan, and J. Zhou. 2004. Detection of biodegradation and biotransformation genes in microbial communities using 50-mer oligonucleotide microarrays. Appl. Environ. Microbiol. 70:4303-4317.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 4303-4317
-
-
Rhee, S.K.1
Liu, X.2
Wu, L.3
Chong, S.C.4
Wan, X.5
Zhou, J.6
-
23
-
-
0033214149
-
Genome-wide expression profiling in Escherichia coli K-12
-
Richmond, C. S., J. D. Glasner, R. Mau, H. Jin, and F. R. Blattner. 1999. Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Res. 27:3821-3835.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3821-3835
-
-
Richmond, C.S.1
Glasner, J.D.2
Mau, R.3
Jin, H.4
Blattner, F.R.5
-
24
-
-
0036208669
-
OligoArray: Genome-scale oligonucleotide design for microarrays
-
Rouillard, J. M., C. Herbert, and M. Zuker. 2002. OligoArray: genome-scale oligonucleotide design for microarrays. Bioinformatics 18:486-487.
-
(2002)
Bioinformatics
, vol.18
, pp. 486-487
-
-
Rouillard, J.M.1
Herbert, C.2
Zuker, M.3
-
25
-
-
0038239283
-
OligoArray 2.0: Design of oligonucleotide probes for DNA microarrays using thermodynamic approach
-
Rouillard, J. M., M. Zuker, and E. Gulari. 2003. OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using thermodynamic approach. Nucleic Acids Res. 31:3057-3062.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3057-3062
-
-
Rouillard, J.M.1
Zuker, M.2
Gulari, E.3
-
26
-
-
0035865260
-
Experimental annotation of the human genome using microarray technology
-
Shoemaker, D. D., E. E. Schadt, C. D. Armour, Y. D. He, P. Garrett-Engele, P. D. McDonagh, P. M. Loerch, A. Leonardson, P. Y. Lum, G. Cavet, L. F. Wu, S. J. Altschuler, S. Edwards, J. King, J. S. Tsang, G. Schimmack, J. M. Scheliter, J. Koch, M. Ziman, M. J. Marton, B. Li, P. Cundiff, T. Ward, J. Castle, M. Krolewski, M. R. Meyer, M. Mao, J. Burchard, M. J. Kidd, H. Dai, J. W. Phillips, P. S. Linsley, R. Stoughton, S. Scherler, and M. S. Boguski. 2001. Experimental annotation of the human genome using microarray technology. Nature 409:922-927.
-
(2001)
Nature
, vol.409
, pp. 922-927
-
-
Shoemaker, D.D.1
Schadt, E.E.2
Armour, C.D.3
He, Y.D.4
Garrett-Engele, P.5
McDonagh, P.D.6
Loerch, P.M.7
Leonardson, A.8
Lum, P.Y.9
Cavet, G.10
Wu, L.F.11
Altschuler, S.J.12
Edwards, S.13
King, J.14
Tsang, J.S.15
Schimmack, G.16
Scheliter, J.M.17
Koch, J.18
Ziman, M.19
Marton, M.J.20
Li, B.21
Cundiff, P.22
Ward, T.23
Castle, J.24
Krolewski, M.25
Meyer, M.R.26
Mao, M.27
Burchard, J.28
Kidd, M.J.29
Dai, H.30
Phillips, J.W.31
Linsley, P.S.32
Stoughton, R.33
Scherler, S.34
Boguski, M.S.35
more..
-
27
-
-
0029859713
-
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
-
Sugimoto, N., S. Nakano, M. Yoneyama, and K. Honda. 1996. Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res. 24:4501-4505.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4501-4505
-
-
Sugimoto, N.1
Nakano, S.2
Yoneyama, M.3
Honda, K.4
-
28
-
-
0037316061
-
Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment
-
Taroncher-Oldedburg, G., E. M. Griner, C. A. Francis, and B. B. Ward. 2003. Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl. Environ. Microbiol. 69:1159-1171.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1159-1171
-
-
Taroncher-Oldedburg, G.1
Griner, E.M.2
Francis, C.A.3
Ward, B.B.4
-
29
-
-
1842579620
-
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
-
Tiquia, S. M., L. Wu, S. C. Chong, S. Passovets, D. Xu, Y. Xu, and J. Zhou. 2004. Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. BioTechniques 36:664-675.
-
(2004)
BioTechniques
, vol.36
, pp. 664-675
-
-
Tiquia, S.M.1
Wu, L.2
Chong, S.C.3
Passovets, S.4
Xu, D.5
Xu, Y.6
Zhou, J.7
-
30
-
-
1842494853
-
Key considerations for accurate microarray scanning and image analysis
-
G. Kamberova (ed.). DNA Press LLC, Salem, Mass
-
Verdick, D., S. Handran, and S. Pickett. 2002. Key considerations for accurate microarray scanning and image analysis, p. 83-98. In G. Kamberova (ed.), DNA image analysis: nuts and bolts. DNA Press LLC, Salem, Mass.
-
(2002)
DNA Image Analysis: Nuts and Bolts
, pp. 83-98
-
-
Verdick, D.1
Handran, S.2
Pickett, S.3
-
31
-
-
0037958765
-
Selection of oligonucleotide probes for protein coding sequences
-
Wang, X., and B. Seed. 2003. Selection of oligonucleotide probes for protein coding sequences. Bioinformatics 19:795-802.
-
(2003)
Bioinformatics
, vol.19
, pp. 795-802
-
-
Wang, X.1
Seed, B.2
-
32
-
-
0031453850
-
Genome-wide expression monitoring in Saccharomyces cerevisiae
-
Wodicka, L., H. Dong, M. Mittmann, M. H. Ho, and D. J. Lockhart. 1997. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotechnol. 15:1359-1367.
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 1359-1367
-
-
Wodicka, L.1
Dong, H.2
Mittmann, M.3
Ho, M.H.4
Lockhart, D.J.5
-
33
-
-
1842844023
-
PRIMEGENS: Robust and efficient design of gene-specific probes for microarray analysis
-
Xu, D., G. Li, L. Wu, J. Zhou, and Y. Xu. 2002. PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Bioinformatics 18:1432-1437.
-
(2002)
Bioinformatics
, vol.18
, pp. 1432-1437
-
-
Xu, D.1
Li, G.2
Wu, L.3
Zhou, J.4
Xu, Y.5
-
34
-
-
0037772204
-
Microarrays for bacterial detection and microbial community analysis
-
Zhou, J. 2003. Microarrays for bacterial detection and microbial community analysis. Curr. Opin. Microbiol. 6:288-294.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 288-294
-
-
Zhou, J.1
|