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Volumn 8, Issue 8, 2009, Pages 961-968

Distinct kinetics of human DNA ligases I, IIIα, IIIβ, and IV reveal direct DNA sensing ability and differential physiological functions in DNA repair

Author keywords

Assay; Development; DNA ligases; Enzyme kinetics; Fluorescence spectroscopy; Substrate recognition

Indexed keywords

POLYDEOXYRIBONUCLEOTIDE SYNTHASE; XRCC1 PROTEIN; XRCC4 PROTEIN;

EID: 67650641974     PISSN: 15687864     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dnarep.2009.06.002     Document Type: Article
Times cited : (26)

References (37)
  • 1
    • 50649116450 scopus 로고    scopus 로고
    • Eukaryotic DNA ligases: structural and functional insights
    • Ellenberger T., and Tomkinson A.E. Eukaryotic DNA ligases: structural and functional insights. Ann. Rev. Biochem. 77 (2008) 313-338
    • (2008) Ann. Rev. Biochem. , vol.77 , pp. 313-338
    • Ellenberger, T.1    Tomkinson, A.E.2
  • 2
    • 0032960864 scopus 로고    scopus 로고
    • The human DNA ligase III gene encodes nuclear and mitochondrial proteins
    • Lakshmipathy U., and Campbell C. The human DNA ligase III gene encodes nuclear and mitochondrial proteins. Mol. Cell. Biol. 19 (1999) 3869-3876
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 3869-3876
    • Lakshmipathy, U.1    Campbell, C.2
  • 3
    • 0031045858 scopus 로고    scopus 로고
    • An alternative splicing event which occurs in mouse pachytene spermatocytes generates a form of DNA ligase III with distinct biochemical properties that may function in meiotic recombination
    • Mackey Z.B., Ramos W., Levin D.S., Walter C.A., McCarrey J.R., and Tomkinson A.E. An alternative splicing event which occurs in mouse pachytene spermatocytes generates a form of DNA ligase III with distinct biochemical properties that may function in meiotic recombination. Mol. Cell. Biol. 17 (1997) 989-998
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 989-998
    • Mackey, Z.B.1    Ramos, W.2    Levin, D.S.3    Walter, C.A.4    McCarrey, J.R.5    Tomkinson, A.E.6
  • 4
    • 0026680743 scopus 로고
    • Mutations in the DNA ligase I gene of an individual with immunodeficiencies and cellular hypersensitivity to DNA-damaging agents
    • Barnes D.E., Tomkinson A.E., Lehmann A.R., Webster A.D., and Lindahl T. Mutations in the DNA ligase I gene of an individual with immunodeficiencies and cellular hypersensitivity to DNA-damaging agents. Cell 69 (1992) 495-503
    • (1992) Cell , vol.69 , pp. 495-503
    • Barnes, D.E.1    Tomkinson, A.E.2    Lehmann, A.R.3    Webster, A.D.4    Lindahl, T.5
  • 9
    • 0032971199 scopus 로고    scopus 로고
    • Absence of DNA ligase IV protein in XR-1 cells: evidence for stabilization by XRCC4
    • Bryans M., Valenzano M.C., and Stamato T.D. Absence of DNA ligase IV protein in XR-1 cells: evidence for stabilization by XRCC4. Mutat. Res. 433 (1999) 53-58
    • (1999) Mutat. Res. , vol.433 , pp. 53-58
    • Bryans, M.1    Valenzano, M.C.2    Stamato, T.D.3
  • 10
    • 0028862933 scopus 로고
    • Characterization of the XRCC1-DNA ligase III complex in vitro and its absence from mutant hamster cells
    • Caldecott K.W., Tucker J.D., Stanker L.H., and Thompson L.H. Characterization of the XRCC1-DNA ligase III complex in vitro and its absence from mutant hamster cells. Nucleic Acids Res. 23 (1995) 4836-4843
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4836-4843
    • Caldecott, K.W.1    Tucker, J.D.2    Stanker, L.H.3    Thompson, L.H.4
  • 12
    • 0032185230 scopus 로고    scopus 로고
    • DNA ligase IV is essential for V(D)J recombination and DNA double-strand break repair in human precursor lymphocytes
    • Grawunder U., Zimmer D., Fugmann S., Schwarz K., and Lieber M.R. DNA ligase IV is essential for V(D)J recombination and DNA double-strand break repair in human precursor lymphocytes. Mol. Cell 2 (1998) 477-484
    • (1998) Mol. Cell , vol.2 , pp. 477-484
    • Grawunder, U.1    Zimmer, D.2    Fugmann, S.3    Schwarz, K.4    Lieber, M.R.5
  • 16
    • 9644289536 scopus 로고    scopus 로고
    • Human DNA ligase I completely encircles and partially unwinds nicked DNA
    • Pascal J.M., O'Brien P.J., Tomkinson A.E., and Ellenberger T. Human DNA ligase I completely encircles and partially unwinds nicked DNA. Nature 432 (2004) 473-478
    • (2004) Nature , vol.432 , pp. 473-478
    • Pascal, J.M.1    O'Brien, P.J.2    Tomkinson, A.E.3    Ellenberger, T.4
  • 17
    • 34247567490 scopus 로고    scopus 로고
    • Human DNA ligase IV and the ligase IV/XRCC4 complex: analysis of nick ligation fidelity
    • Wang Y., Lamarche B.J., and Tsai M.D. Human DNA ligase IV and the ligase IV/XRCC4 complex: analysis of nick ligation fidelity. Biochemistry 46 (2007) 4962-4976
    • (2007) Biochemistry , vol.46 , pp. 4962-4976
    • Wang, Y.1    Lamarche, B.J.2    Tsai, M.D.3
  • 18
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 (2003) 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 20
    • 0035946973 scopus 로고    scopus 로고
    • Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics
    • Heilman-Miller S.L., Pan J., Thirumalai D., and Woodson S.A. Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics. J. Mol. Biol. 309 (2001) 57-68
    • (2001) J. Mol. Biol. , vol.309 , pp. 57-68
    • Heilman-Miller, S.L.1    Pan, J.2    Thirumalai, D.3    Woodson, S.A.4
  • 21
    • 0028934312 scopus 로고
    • Purification and characterization of DNA ligase III from bovine testes. Homology with DNA ligase II and vaccinia DNA ligase
    • Husain I., Tomkinson A.E., Burkhart W.A., Moyer M.B., Ramos W., Mackey Z.B., Besterman J.M., and Chen J. Purification and characterization of DNA ligase III from bovine testes. Homology with DNA ligase II and vaccinia DNA ligase. J. Biol. Chem. 270 (1995) 9683-9690
    • (1995) J. Biol. Chem. , vol.270 , pp. 9683-9690
    • Husain, I.1    Tomkinson, A.E.2    Burkhart, W.A.3    Moyer, M.B.4    Ramos, W.5    Mackey, Z.B.6    Besterman, J.M.7    Chen, J.8
  • 22
    • 0029817836 scopus 로고    scopus 로고
    • DNA ligase IV from HeLa cell nuclei
    • Robins P., and Lindahl T. DNA ligase IV from HeLa cell nuclei. J. Biol. Chem. 271 (1996) 24257-24261
    • (1996) J. Biol. Chem. , vol.271 , pp. 24257-24261
    • Robins, P.1    Lindahl, T.2
  • 23
    • 0025358680 scopus 로고
    • Mammalian DNA ligases, catalytic domain and size of DNA ligase I
    • Tomkinson A.E., Lasko D.D., Daly G., and Lindahl T. Mammalian DNA ligases, catalytic domain and size of DNA ligase I. J. Biol. Chem. 265 (1990) 12611-12617
    • (1990) J. Biol. Chem. , vol.265 , pp. 12611-12617
    • Tomkinson, A.E.1    Lasko, D.D.2    Daly, G.3    Lindahl, T.4
  • 24
    • 0034714199 scopus 로고    scopus 로고
    • Interactions of the DNA ligase IV-XRCC4 complex with DNA ends and the DNA-dependent protein kinase
    • Chen L., Trujillo K., Sung P., and Tomkinson A.E. Interactions of the DNA ligase IV-XRCC4 complex with DNA ends and the DNA-dependent protein kinase. J. Biol. Chem. 275 (2000) 26196-26205
    • (2000) J. Biol. Chem. , vol.275 , pp. 26196-26205
    • Chen, L.1    Trujillo, K.2    Sung, P.3    Tomkinson, A.E.4
  • 25
    • 0029842307 scopus 로고    scopus 로고
    • Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase beta and the XRCC1 protein
    • Kubota Y., Nash R.A., Klungland A., Schar P., Barnes D.E., and Lindahl T. Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase beta and the XRCC1 protein. EMBO J. 15 (1996) 6662-6670
    • (1996) EMBO J. , vol.15 , pp. 6662-6670
    • Kubota, Y.1    Nash, R.A.2    Klungland, A.3    Schar, P.4    Barnes, D.E.5    Lindahl, T.6
  • 26
    • 0033618289 scopus 로고    scopus 로고
    • DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III
    • Mackey Z.B., Niedergang C., Murcia J.M., Leppard J., Au K., Chen J., de Murcia G., and Tomkinson A.E. DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III. J. Biol. Chem. 274 (1999) 21679-21687
    • (1999) J. Biol. Chem. , vol.274 , pp. 21679-21687
    • Mackey, Z.B.1    Niedergang, C.2    Murcia, J.M.3    Leppard, J.4    Au, K.5    Chen, J.6    de Murcia, G.7    Tomkinson, A.E.8
  • 29
    • 44849118274 scopus 로고    scopus 로고
    • Two DNA-binding and Nick Recognition Modules in Human DNA Ligase III
    • Cotner-Gohara E., Kim I.K., Tomkinson A.E., and Ellenberger T. Two DNA-binding and Nick Recognition Modules in Human DNA Ligase III. J. Biol. Chem. 283 (2008) 10764-10772
    • (2008) J. Biol. Chem. , vol.283 , pp. 10764-10772
    • Cotner-Gohara, E.1    Kim, I.K.2    Tomkinson, A.E.3    Ellenberger, T.4
  • 30
    • 0342350255 scopus 로고    scopus 로고
    • Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair
    • Levin D.S., McKenna A.E., Motycka T.A., Matsumoto Y., and Tomkinson A.E. Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair. Curr. Biol. 10 (2000) 919-922
    • (2000) Curr. Biol. , vol.10 , pp. 919-922
    • Levin, D.S.1    McKenna, A.E.2    Motycka, T.A.3    Matsumoto, Y.4    Tomkinson, A.E.5
  • 31
    • 0042632806 scopus 로고    scopus 로고
    • Physical and functional interaction between DNA ligase IIIalpha and poly(ADP-Ribose) polymerase 1 in DNA single-strand break repair
    • Leppard J.B., Dong Z., Mackey Z.B., and Tomkinson A.E. Physical and functional interaction between DNA ligase IIIalpha and poly(ADP-Ribose) polymerase 1 in DNA single-strand break repair. Mol. Cell. Biol. 23 (2003) 5919-5927
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 5919-5927
    • Leppard, J.B.1    Dong, Z.2    Mackey, Z.B.3    Tomkinson, A.E.4
  • 32
    • 0034666329 scopus 로고    scopus 로고
    • The DNA ligase III zinc finger stimulates binding to DNA secondary structure and promotes end joining
    • Taylor R.M., Whitehouse C.J., and Caldecott K.W. The DNA ligase III zinc finger stimulates binding to DNA secondary structure and promotes end joining. Nucleic Acids Res. 28 (2000) 3558-3563
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3558-3563
    • Taylor, R.M.1    Whitehouse, C.J.2    Caldecott, K.W.3
  • 33
    • 51649128895 scopus 로고    scopus 로고
    • Up-regulation of WRN and DNA ligase IIIa in chronic myeloid leukemia: consequences for the repair of DNA double strand breaks
    • Sallmyr A., Tomkinson A.E., and Rassool F. Up-regulation of WRN and DNA ligase IIIa in chronic myeloid leukemia: consequences for the repair of DNA double strand breaks. Blood 112 (2008) 1413-1423
    • (2008) Blood , vol.112 , pp. 1413-1423
    • Sallmyr, A.1    Tomkinson, A.E.2    Rassool, F.3
  • 34
    • 20144363082 scopus 로고    scopus 로고
    • DNA ligase III as a candidate component of backup pathways of nonhomologous end joining
    • Wang H., Rosidi B., Perrault R., Wang M., Zhang L., Windhofer F., and Iliakis G. DNA ligase III as a candidate component of backup pathways of nonhomologous end joining. Cancer Res. 65 (2005) 4020-4030
    • (2005) Cancer Res. , vol.65 , pp. 4020-4030
    • Wang, H.1    Rosidi, B.2    Perrault, R.3    Wang, M.4    Zhang, L.5    Windhofer, F.6    Iliakis, G.7
  • 35
    • 0034602285 scopus 로고    scopus 로고
    • DNA ligase IV and XRCC4 form a stable mixed tetramer that functions synergistically with other repair factors in a cell-free end-joining system
    • Lee K.J., Huang J., Takeda Y., and Dynan W.S. DNA ligase IV and XRCC4 form a stable mixed tetramer that functions synergistically with other repair factors in a cell-free end-joining system. J. Biol. Chem. 275 (2000) 34787-34796
    • (2000) J. Biol. Chem. , vol.275 , pp. 34787-34796
    • Lee, K.J.1    Huang, J.2    Takeda, Y.3    Dynan, W.S.4
  • 36
    • 0035903103 scopus 로고    scopus 로고
    • Cellular and biochemical impact of a mutation in DNA ligase IV conferring clinical radiosensitivity
    • Riballo E., Doherty A.J., Dai Y., Stiff T., Oettinger M.A., Jeggo P.A., and Kysela B. Cellular and biochemical impact of a mutation in DNA ligase IV conferring clinical radiosensitivity. J. Biol. Chem. 276 (2001) 31124-31132
    • (2001) J. Biol. Chem. , vol.276 , pp. 31124-31132
    • Riballo, E.1    Doherty, A.J.2    Dai, Y.3    Stiff, T.4    Oettinger, M.A.5    Jeggo, P.A.6    Kysela, B.7


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