-
1
-
-
33845450681
-
The nuclear proteome of chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins
-
Pandey, A.; Choudhary, M. K.; Bhushan, D.; Chattopadhyay, A.; Chakraborty, S.; Datta, A.; Chakraborty, N. The nuclear proteome of chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins. J. Proteome Res. 2006, 5 (12), 3301-11.
-
(2006)
J. Proteome Res
, vol.5
, Issue.12
, pp. 3301-3311
-
-
Pandey, A.1
Choudhary, M.K.2
Bhushan, D.3
Chattopadhyay, A.4
Chakraborty, S.5
Datta, A.6
Chakraborty, N.7
-
2
-
-
55549141877
-
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
-
Zilberman, D.; Coleman-Derr, D.; Ballinger, T.; Henikoff, S. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature 2008, 456 (7218), 125-9.
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 125-129
-
-
Zilberman, D.1
Coleman-Derr, D.2
Ballinger, T.3
Henikoff, S.4
-
3
-
-
0034708133
-
Proteomics for the pore
-
Blobel, G.; Wozniak, R. W. Proteomics for the pore. Nature 2000, 403 (6772), 835-6.
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 835-836
-
-
Blobel, G.1
Wozniak, R.W.2
-
4
-
-
38349187678
-
Nucleocytoplasmic transport of proteins
-
Sorokin, A. V.; Kim, E. R.; Ovchinnikov, L. P. Nucleocytoplasmic transport of proteins. Biochemistry (Moscow) 2007, 72 (13), 1439-57.
-
(2007)
Biochemistry (Moscow)
, vol.72
, Issue.13
, pp. 1439-1457
-
-
Sorokin, A.V.1
Kim, E.R.2
Ovchinnikov, L.P.3
-
5
-
-
36749045172
-
The molecular architecture of the nuclear pore complex
-
Alber, F.; Dokudovskaya, S.; Veenhoff, L. M.; Zhang, W.; Kipper, J.; Devos, D.; Suprapto, A.; Karni-Schmidt, O.; Williams, R.; Chait, B. T.; Sali, A.; Rout, M. P. The molecular architecture of the nuclear pore complex. Nature 2007, 450 (7170), 695-701.
-
(2007)
Nature
, vol.450
, Issue.7170
, pp. 695-701
-
-
Alber, F.1
Dokudovskaya, S.2
Veenhoff, L.M.3
Zhang, W.4
Kipper, J.5
Devos, D.6
Suprapto, A.7
Karni-Schmidt, O.8
Williams, R.9
Chait, B.T.10
Sali, A.11
Rout, M.P.12
-
6
-
-
56049084903
-
-
Carrera, I.; Treisman, J. E. Message in a nucleus: signaling to the transcriptional machinery. Curr. Opin. Genet. Dev. 2008, 18 (5), 397-403.
-
Carrera, I.; Treisman, J. E. Message in a nucleus: signaling to the transcriptional machinery. Curr. Opin. Genet. Dev. 2008, 18 (5), 397-403.
-
-
-
-
7
-
-
0037087575
-
Subcellular localization of the yeast proteome
-
Kumar, A.; Agarwal, S.; Heyman, J. A.; Matson, S.; Heidtman, M.; Piccirillo, S.; Umansky, L.; Drawid, A.; Jansen, R.; Liu, Y.; Cheung, K. H.; Miller, P.; Gerstein, M.; Roeder, G. S.; Snyder, M. Subcellular localization of the yeast proteome. Genes Dev. 2002, 16 (6), 707-19.
-
(2002)
Genes Dev
, vol.16
, Issue.6
, pp. 707-719
-
-
Kumar, A.1
Agarwal, S.2
Heyman, J.A.3
Matson, S.4
Heidtman, M.5
Piccirillo, S.6
Umansky, L.7
Drawid, A.8
Jansen, R.9
Liu, Y.10
Cheung, K.H.11
Miller, P.12
Gerstein, M.13
Roeder, G.S.14
Snyder, M.15
-
8
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh, W. K.; Falvo, J. V.; Gerke, L. C.; Carroll, A. S.; Howson, R. W.; Weissman, J. S.; O'Shea, E. K. Global analysis of protein localization in budding yeast. Nature 2003, 425 (6959), 686-91.
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
9
-
-
0034806227
-
The nuclear pore complex
-
REVIEWS0007
-
Adam, S. A. The nuclear pore complex. GenomeBiology 2001, 2 (9), REVIEWS0007.
-
(2001)
GenomeBiology
, vol.2
, Issue.9
-
-
Adam, S.A.1
-
10
-
-
0031028382
-
Nuclear localization of cyclin B1 mediates its biological activity and is regulated by phosphorylation
-
Li, J.; Meyer, A. N.; Donoghue, D. J. Nuclear localization of cyclin B1 mediates its biological activity and is regulated by phosphorylation. Proc. Natl. Acad. Sci. U.S.A. 1997, 94 (2), 502-7.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A
, vol.94
, Issue.2
, pp. 502-507
-
-
Li, J.1
Meyer, A.N.2
Donoghue, D.J.3
-
11
-
-
0032533225
-
Glycogen synthase kinase-3beta regulates cyclin D1 proteolysis and subcellular localization
-
Diehl, J. A.; Cheng, M.; Roussel, M. F.; Sherr, C. J. Glycogen synthase kinase-3beta regulates cyclin D1 proteolysis and subcellular localization. Genes Dev. 1998, 12 (22), 3499-511.
-
(1998)
Genes Dev
, vol.12
, Issue.22
, pp. 3499-3511
-
-
Diehl, J.A.1
Cheng, M.2
Roussel, M.F.3
Sherr, C.J.4
-
12
-
-
0030768948
-
Cdc25 mitotic inducer targeted by chk1 DNA damage checkpoint kinase
-
Furnari, B.; Rhind, N.; Russell, P. Cdc25 mitotic inducer targeted by chk1 DNA damage checkpoint kinase. Science 1997, 277 (5331), 1495-7.
-
(1997)
Science
, vol.277
, Issue.5331
, pp. 1495-1497
-
-
Furnari, B.1
Rhind, N.2
Russell, P.3
-
13
-
-
0033604566
-
Large-scale analysis of the yeast genome by transposon tagging and gene disruption
-
Ross-Macdonald, P.; Coelho, P. S.; Roemer, T.; Agarwal, S.; Kumar, A.; Jansen, R.; Cheung, K. H.; Sheehan, A.; Symoniatis, D.; Umansky, L.; Heidtman, M.; Nelson, F. K.; Iwasaki, H.; Hager, K.; Gerstein, M.; Miller, P.; Roeder, G. S.; Snyder, M. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature 1999, 402 (6760), 413-8.
-
(1999)
Nature
, vol.402
, Issue.6760
, pp. 413-418
-
-
Ross-Macdonald, P.1
Coelho, P.S.2
Roemer, T.3
Agarwal, S.4
Kumar, A.5
Jansen, R.6
Cheung, K.H.7
Sheehan, A.8
Symoniatis, D.9
Umansky, L.10
Heidtman, M.11
Nelson, F.K.12
Iwasaki, H.13
Hager, K.14
Gerstein, M.15
Miller, P.16
Roeder, G.S.17
Snyder, M.18
-
14
-
-
0034738489
-
Diverse nuclear transport pathways regulate cell proliferation and oncogenesis
-
Hood, J. K.; Silver, P. A. Diverse nuclear transport pathways regulate cell proliferation and oncogenesis. Biochim. Biophys. Acta 2000, 1471 (1), M31-41.
-
(2000)
Biochim. Biophys. Acta
, vol.1471
, Issue.1
-
-
Hood, J.K.1
Silver, P.A.2
-
15
-
-
10244239321
-
Life with 6000 genes
-
Goffeau, A.; Barrell, B. G.; Bussey, H.; Davis, R. W.; Dujon, B.; Feldmann, H.; Galibert, F.; Hoheisel, J. D.; Jacq, C.; Johnston, M.; Louis, E. J.; Mewes, H. W.; Murakami, Y.; Philippsen, P.; Tettelin, H.; Oliver, S. G. Life with 6000 genes. Science 1996, 274 (5287), 563-7.
-
(1996)
Science
, vol.274
, Issue.5287
, pp. 563-567
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
Louis, E.J.11
Mewes, H.W.12
Murakami, Y.13
Philippsen, P.14
Tettelin, H.15
Oliver, S.G.16
-
16
-
-
0037277179
-
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
-
Peng, J.; Elias, J. E.; Thoreen, C. C.; Licklider, L. J.; Gygi, S. P. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2003, 2 (1), 43-50.
-
(2003)
J. Proteome Res
, vol.2
, Issue.1
, pp. 43-50
-
-
Peng, J.1
Elias, J.E.2
Thoreen, C.C.3
Licklider, L.J.4
Gygi, S.P.5
-
17
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy, L. M.; Olsen, J. V.; Cox, J.; Nielsen, M. L.; Hubner, N. C.; Frohlich, F.; Walther, T. C.; Mann, M. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 2008, 455 (7217), 1251-4.
-
(2008)
Nature
, vol.455
, Issue.7217
, pp. 1251-1254
-
-
de Godoy, L.M.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
Hubner, N.C.5
Frohlich, F.6
Walther, T.C.7
Mann, M.8
-
18
-
-
33644555054
-
-
Gavin, A. C.; Aloy, P.; Grandi, P.; Krause, R.; Boesche, M.; Marzioch, M.; Rau, C.; Jensen, L. J.; Bastuck, S.; Dumpelfeld, B.; Edelmann, A.; Heurtier, M. A.; Hoffman, V.; Hoefert, C.; Klein, K.; Hudak, M.; Michon, A. M.; Schelder, M.; Schirle, M.; Remor, M.; Rudi, T.; Hooper, S.; Bauer, A.; Bouwmeester, T.; Casari, G.; Drewes, G.; Neubauer, G.; Rick, J. M.; Kuster, B.; Bork, P.; Russell, R. B.; Superti-Furga, G. Proteome survey reveals modularity of the yeast cell machinery. Nature 2006, 440 (7084), 631-6.
-
Gavin, A. C.; Aloy, P.; Grandi, P.; Krause, R.; Boesche, M.; Marzioch, M.; Rau, C.; Jensen, L. J.; Bastuck, S.; Dumpelfeld, B.; Edelmann, A.; Heurtier, M. A.; Hoffman, V.; Hoefert, C.; Klein, K.; Hudak, M.; Michon, A. M.; Schelder, M.; Schirle, M.; Remor, M.; Rudi, T.; Hooper, S.; Bauer, A.; Bouwmeester, T.; Casari, G.; Drewes, G.; Neubauer, G.; Rick, J. M.; Kuster, B.; Bork, P.; Russell, R. B.; Superti-Furga, G. Proteome survey reveals modularity of the yeast cell machinery. Nature 2006, 440 (7084), 631-6.
-
-
-
-
19
-
-
0037306721
-
Protein complexes and proteome organization from yeast to man
-
Gavin, A. C.; Superti-Furga, G. Protein complexes and proteome organization from yeast to man. Curr. Opin. Chem. Biol. 2003, 7 (1), 21-7.
-
(2003)
Curr. Opin. Chem. Biol
, vol.7
, Issue.1
, pp. 21-27
-
-
Gavin, A.C.1
Superti-Furga, G.2
-
20
-
-
0037050004
-
-
Ho, Y.; Gruhler, A.; Heilbut, A.; Bader, G. D.; Moore, L.; Adams, S. L.; Millar, A.; Taylor, P.; Bennett, K.; Boutilier, K.; Yang, L.; Wolting, C.; Donaldson, I.; Schandorff, S.; Shewnarane, J.; Vo, M.; Taggart, J.; Goudreault, M.; Muskat, B.; Alfarano, C.; Dewar, D.; Lin, Z.; Michalickova, K.; Willems, A. R.; Sassi, H.; Nielsen, P. A.; Rasmussen, K. J.; Andersen, J. R.; Johansen, L. E.; Hansen, L. H.; Jespersen, H.; Podtelejnikov, A.; Nielsen, E.; Crawford, J.; Poulsen, V.; Sorensen, B. D.; Matthiesen, J.; Hendrickson, R. C.; Gleeson, F.; Pawson, T.; Moran, M. F.; Durocher, D.; Mann, M.; Hogue, C. W.; Figeys, D.; Tyers, M. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415 (6868), 180-3.
-
Ho, Y.; Gruhler, A.; Heilbut, A.; Bader, G. D.; Moore, L.; Adams, S. L.; Millar, A.; Taylor, P.; Bennett, K.; Boutilier, K.; Yang, L.; Wolting, C.; Donaldson, I.; Schandorff, S.; Shewnarane, J.; Vo, M.; Taggart, J.; Goudreault, M.; Muskat, B.; Alfarano, C.; Dewar, D.; Lin, Z.; Michalickova, K.; Willems, A. R.; Sassi, H.; Nielsen, P. A.; Rasmussen, K. J.; Andersen, J. R.; Johansen, L. E.; Hansen, L. H.; Jespersen, H.; Podtelejnikov, A.; Nielsen, E.; Crawford, J.; Poulsen, V.; Sorensen, B. D.; Matthiesen, J.; Hendrickson, R. C.; Gleeson, F.; Pawson, T.; Moran, M. F.; Durocher, D.; Mann, M.; Hogue, C. W.; Figeys, D.; Tyers, M. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415 (6868), 180-3.
-
-
-
-
21
-
-
0037311421
-
Global organellar proteomics
-
Taylor, S. W.; Fahy, E.; Ghosh, S. S. Global organellar proteomics. Trends Biotechnol. 2003, 21 (2), 82-8.
-
(2003)
Trends Biotechnol
, vol.21
, Issue.2
, pp. 82-88
-
-
Taylor, S.W.1
Fahy, E.2
Ghosh, S.S.3
-
22
-
-
33751074671
-
Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis
-
Ho, E.; Hayen, A.; Wilkins, M. R. Characterisation of organellar proteomes: a guide to subcellular proteomic fractionation and analysis. Proteomics 2006, 6 (21), 5746-57.
-
(2006)
Proteomics
, vol.6
, Issue.21
, pp. 5746-5757
-
-
Ho, E.1
Hayen, A.2
Wilkins, M.R.3
-
23
-
-
51149109591
-
-
Gauthier, D. J.; Lazure, C. Complementary methods to assist subcellular fractionation in organellar proteomics. Expert Rev. Proteomics 2008, 5 (4), 603-17.
-
Gauthier, D. J.; Lazure, C. Complementary methods to assist subcellular fractionation in organellar proteomics. Expert Rev. Proteomics 2008, 5 (4), 603-17.
-
-
-
-
24
-
-
34548019495
-
Organellar proteomics to create the cell map
-
Au, C. E.; Bell, A. W.; Gilchrist, A.; Hiding, J.; Nilsson, T.; Bergeron, J. J. Organellar proteomics to create the cell map. Curr. Opin. Cell Biol. 2007, 19 (4), 376-85.
-
(2007)
Curr. Opin. Cell Biol
, vol.19
, Issue.4
, pp. 376-385
-
-
Au, C.E.1
Bell, A.W.2
Gilchrist, A.3
Hiding, J.4
Nilsson, T.5
Bergeron, J.J.6
-
25
-
-
60649087511
-
A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus
-
Mosley, A. L.; Florens, L.; Wen, Z.; Washburn, M. P. A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus. J. Proteomics 2009, 72 (1), 110-20.
-
(2009)
J. Proteomics
, vol.72
, Issue.1
, pp. 110-120
-
-
Mosley, A.L.1
Florens, L.2
Wen, Z.3
Washburn, M.P.4
-
26
-
-
33745857712
-
In-gel isoelectric focusing of peptides as a tool for improved protein identification
-
Krijgsveld, J.; Gauci, S.; Dormeyer, W.; Heck, A. J. In-gel isoelectric focusing of peptides as a tool for improved protein identification. J. Proteome Res. 2006, 5 (7), 1721-30.
-
(2006)
J. Proteome Res
, vol.5
, Issue.7
, pp. 1721-1730
-
-
Krijgsveld, J.1
Gauci, S.2
Dormeyer, W.3
Heck, A.J.4
-
27
-
-
33745851905
-
Toward the complete yeast mitochondrial proteome: Multidimensional separation techniques for mitochondrial proteomics
-
Reinders, J.; Zahedi, R. P.; Pfanner, N.; Meisinger, C.; Sickmann, A. Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics. J. Proteome Res. 2006, 5 (7), 1543-54.
-
(2006)
J. Proteome Res
, vol.5
, Issue.7
, pp. 1543-1554
-
-
Reinders, J.1
Zahedi, R.P.2
Pfanner, N.3
Meisinger, C.4
Sickmann, A.5
-
28
-
-
13244271374
-
A comparison of immobilized pH gradient isoelectric focusing and strong-cation-exchange chromatography as a first dimension in shotgun proteomics
-
Essader, A. S.; Cargile, B. J.; Bundy, J. L.; Stephenson, J. L., Jr. A comparison of immobilized pH gradient isoelectric focusing and strong-cation-exchange chromatography as a first dimension in shotgun proteomics. Proteomics 2005, 5 (1), 24-34.
-
(2005)
Proteomics
, vol.5
, Issue.1
, pp. 24-34
-
-
Essader, A.S.1
Cargile, B.J.2
Bundy, J.L.3
Stephenson Jr., J.L.4
-
29
-
-
45549093903
-
Online automated in vivo zebrafish phosphoproteomics: From large-scale analysis down to a single embryo
-
Lemeer, S.; Pinkse, M. W.; Mohammed, S.; van Breukelen, B.; den Hertog, J.; Slijper, M.; Heck, A. J. Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo. J. Proteome Res. 2008, 7 (4), 1555-64.
-
(2008)
J. Proteome Res
, vol.7
, Issue.4
, pp. 1555-1564
-
-
Lemeer, S.1
Pinkse, M.W.2
Mohammed, S.3
van Breukelen, B.4
den Hertog, J.5
Slijper, M.6
Heck, A.J.7
-
30
-
-
33749054454
-
Isolation and mass spectrometry of specific DNA binding proteins
-
Yaneva, M.; Tempst, P. Isolation and mass spectrometry of specific DNA binding proteins. Methods Mol. Biol. 2006, 338, 291-303.
-
(2006)
Methods Mol. Biol
, vol.338
, pp. 291-303
-
-
Yaneva, M.1
Tempst, P.2
-
31
-
-
33644861546
-
Immobilized pH gradient isoelectric focusing as a first-dimension separation in shotgun proteomics
-
Cargile, B. J.; Sevinsky, J. R.; Essader, A. S.; Stephenson, J. L., Jr.; Bundy, J. L. Immobilized pH gradient isoelectric focusing as a first-dimension separation in shotgun proteomics. J. Biomol. Tech. 2005, 16 (3), 181-9.
-
(2005)
J. Biomol. Tech
, vol.16
, Issue.3
, pp. 181-189
-
-
Cargile, B.J.1
Sevinsky, J.R.2
Essader, A.S.3
Stephenson Jr., J.L.4
Bundy, J.L.5
-
32
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn, M. P.; Wolters, D.; Yates, J. R., III. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 2001, 19 (3), 242-7.
-
(2001)
Nat. Biotechnol
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III, J.R.3
-
33
-
-
44449132255
-
Phosphoproteome analysis of fission yeast
-
Wilson-Grady, J. T.; Villen, J.; Gygi, S. P. Phosphoproteome analysis of fission yeast. J. Proteome Res. 2008, 7 (3), 1088-97.
-
(2008)
J. Proteome Res
, vol.7
, Issue.3
, pp. 1088-1097
-
-
Wilson-Grady, J.T.1
Villen, J.2
Gygi, S.P.3
-
34
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
Wolters, D. A.; Washburn, M. P.; Yates, J. R., III. An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 2001, 73 (23), 5683-90.
-
(2001)
Anal. Chem
, vol.73
, Issue.23
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates III, J.R.3
-
35
-
-
34447265519
-
pI-based phosphopeptide enrichment combined with nanoESI-MS
-
Hung, C. W.; Kubler, D.; Lehmann, W. D. pI-based phosphopeptide enrichment combined with nanoESI-MS. Electrophoresis 2007, 28 (12), 2044-52.
-
(2007)
Electrophoresis
, vol.28
, Issue.12
, pp. 2044-2052
-
-
Hung, C.W.1
Kubler, D.2
Lehmann, W.D.3
-
36
-
-
29144480261
-
Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides
-
Heller, M.; Ye, M.; Michel, P. E.; Morier, P.; Stalder, D.; Junger, M. A.; Aebersold, R.; Reymond, F.; Rossier, J. S. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides. J. Proteome Res. 2005, 4 (6), 2273-82.
-
(2005)
J. Proteome Res
, vol.4
, Issue.6
, pp. 2273-2282
-
-
Heller, M.1
Ye, M.2
Michel, P.E.3
Morier, P.4
Stalder, D.5
Junger, M.A.6
Aebersold, R.7
Reymond, F.8
Rossier, J.S.9
-
37
-
-
33747881750
-
The general transcription machinery and general cofactors
-
Thomas, M. C.; Chiang, C. M. The general transcription machinery and general cofactors. Crit. Rev. Biochem. Mol. Biol. 2006, 41 (3), 105-78.
-
(2006)
Crit. Rev. Biochem. Mol. Biol
, vol.41
, Issue.3
, pp. 105-178
-
-
Thomas, M.C.1
Chiang, C.M.2
-
38
-
-
0025013883
-
Components of the yeast spindle and spindle pole body
-
Rout, M. P.; Kilmartin, J. V. Components of the yeast spindle and spindle pole body. J. Cell Biol. 1990, 111 (5 Pt. 1), 1913-27.
-
(1990)
J. Cell Biol
, vol.111
, Issue.5 PART. 1
, pp. 1913-1927
-
-
Rout, M.P.1
Kilmartin, J.V.2
-
40
-
-
0037317228
-
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
-
Rappsilber, J.; Ishihama, Y.; Mann, M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal. Chem. 2003, 75 (3), 663-70.
-
(2003)
Anal. Chem
, vol.75
, Issue.3
, pp. 663-670
-
-
Rappsilber, J.1
Ishihama, Y.2
Mann, M.3
-
41
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 2002, 74 (20), 5383-92.
-
(2002)
Anal. Chem
, vol.74
, Issue.20
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
42
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A. I.; Keller, A.; Kolker, E.; Aebersold, R. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 2003, 75 (17), 4646-58.
-
(2003)
Anal. Chem
, vol.75
, Issue.17
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
43
-
-
57649220813
-
A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing
-
Gauci, S.; van Breukelen, B.; Lemeer, S. M.; Krijgsveld, J.; Heck, A. J. A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing. Proteomics 2008.
-
(2008)
Proteomics
-
-
Gauci, S.1
van Breukelen, B.2
Lemeer, S.M.3
Krijgsveld, J.4
Heck, A.J.5
-
44
-
-
1642485152
-
Immobilized pH gradients as a first dimension in shotgun proteomics and analysis of the accuracy of pI predictability of peptides
-
Cargile, B. J.; Talley, D. L.; Stephenson, J. L., Jr. Immobilized pH gradients as a first dimension in shotgun proteomics and analysis of the accuracy of pI predictability of peptides. Electrophoresis 2004, 25 (6), 936-45.
-
(2004)
Electrophoresis
, vol.25
, Issue.6
, pp. 936-945
-
-
Cargile, B.J.1
Talley, D.L.2
Stephenson Jr., J.L.3
-
45
-
-
0026802039
-
Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH
-
Flores, O.; Lu, H.; Reinberg, D. Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH. J. Biol. Chem. 1992, 267 (4), 2786-93.
-
(1992)
J. Biol. Chem
, vol.267
, Issue.4
, pp. 2786-2793
-
-
Flores, O.1
Lu, H.2
Reinberg, D.3
-
46
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami, S.; Huh, W. K.; Bower, K.; Howson, R. W.; Belle, A.; Dephoure, N.; O'Shea, E. K.; Weissman, J. S. Global analysis of protein expression in yeast. Nature 2003, 425 (6959), 737-41.
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
47
-
-
0020119904
-
Limited proteolysis of liver aldolase and fructose 1,6-bisphosphatase by lysosomal proteinases: Effect on complex formation
-
Pontremoli, S.; Melloni, E.; Michetti, M.; Salamino, F.; Sparatore, B.; Horecker, B. L. Limited proteolysis of liver aldolase and fructose 1,6-bisphosphatase by lysosomal proteinases: effect on complex formation. Proc. Natl. Acad. Sci. U.S.A. 1982, 79 (8), 2451-4.
-
(1982)
Proc. Natl. Acad. Sci. U.S.A
, vol.79
, Issue.8
, pp. 2451-2454
-
-
Pontremoli, S.1
Melloni, E.2
Michetti, M.3
Salamino, F.4
Sparatore, B.5
Horecker, B.L.6
-
48
-
-
0042235200
-
Partial reconstitution of human interstrand cross-link repair in vitro: Characterization of the roles of RPA and PCNA
-
Zhang, N.; Lu, X.; Legerski, R. J. Partial reconstitution of human interstrand cross-link repair in vitro: characterization of the roles of RPA and PCNA. Biochem. Biophys. Res. Commun. 2003, 309 (1), 71-8.
-
(2003)
Biochem. Biophys. Res. Commun
, vol.309
, Issue.1
, pp. 71-78
-
-
Zhang, N.1
Lu, X.2
Legerski, R.J.3
-
49
-
-
0018843370
-
Replication of alfalfa mosaic virus RNA: Evidence for a soluble replicase in healthy and infected tobacco leaves
-
Chifflot, S.; Sommer, P.; Hartmann, D.; Stussi-Garaud, C.; Hirth, L. Replication of alfalfa mosaic virus RNA: evidence for a soluble replicase in healthy and infected tobacco leaves. Virology 1980, 100 (1), 91-100.
-
(1980)
Virology
, vol.100
, Issue.1
, pp. 91-100
-
-
Chifflot, S.1
Sommer, P.2
Hartmann, D.3
Stussi-Garaud, C.4
Hirth, L.5
-
50
-
-
0036269973
-
Proteomics of the eukaryotic transcription machinery: Identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry
-
Sanders, S. L.; Jennings, J.; Canutescu, A.; Link, A. J.; Weil, P. A. Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol. Cell. Biol. 2002, 22 (13), 4723-38.
-
(2002)
Mol. Cell. Biol
, vol.22
, Issue.13
, pp. 4723-4738
-
-
Sanders, S.L.1
Jennings, J.2
Canutescu, A.3
Link, A.J.4
Weil, P.A.5
-
51
-
-
11944274520
-
Nucleolar proteome dynamics
-
Andersen, J. S.; Lam, Y. W.; Leung, A. K.; Ong, S. E.; Lyon, C. E.; Lamond, A. I.; Mann, M. Nucleolar proteome dynamics. Nature 2005, 433 (7021), 77-83.
-
(2005)
Nature
, vol.433
, Issue.7021
, pp. 77-83
-
-
Andersen, J.S.1
Lam, Y.W.2
Leung, A.K.3
Ong, S.E.4
Lyon, C.E.5
Lamond, A.I.6
Mann, M.7
-
52
-
-
40949091947
-
Proteomics of yeast mitochondria
-
Reinders, J.; Sickmann, A. Proteomics of yeast mitochondria. Methods Mol. Biol. 2007, 372, 543-57.
-
(2007)
Methods Mol. Biol
, vol.372
, pp. 543-557
-
-
Reinders, J.1
Sickmann, A.2
-
53
-
-
45749115367
-
Nuclear proteome analysis of undifferentiated mouse embryonic stem and germ cells
-
Buhr, N.; Carapito, C.; Schaeffer, C.; Kieffer, E.; Van Dorsselaer, A.; Viville, S. Nuclear proteome analysis of undifferentiated mouse embryonic stem and germ cells. Electrophoresis 2008, 29 (11), 2381-90.
-
(2008)
Electrophoresis
, vol.29
, Issue.11
, pp. 2381-2390
-
-
Buhr, N.1
Carapito, C.2
Schaeffer, C.3
Kieffer, E.4
Van Dorsselaer, A.5
Viville, S.6
-
54
-
-
0037039159
-
Directed proteomic analysis of the human nucleolus
-
Andersen, J. S.; Lyon, C. E.; Fox, A. H.; Leung, A. K.; Lam, Y. W.; Steen, H.; Mann, M.; Lamond, A. I. Directed proteomic analysis of the human nucleolus. Curr. Biol. 2002, 12 (1), 1-11.
-
(2002)
Curr. Biol
, vol.12
, Issue.1
, pp. 1-11
-
-
Andersen, J.S.1
Lyon, C.E.2
Fox, A.H.3
Leung, A.K.4
Lam, Y.W.5
Steen, H.6
Mann, M.7
Lamond, A.I.8
-
55
-
-
33644917973
-
Deciphering the human nucleolar proteome
-
Coute, Y.; Burgess, J. A.; Diaz, J. J.; Chichester, C.; Lisacek, F.; Greco, A.; Sanchez, J. C. Deciphering the human nucleolar proteome. Mass Spectrom. Rev. 2006, 25 (2), 215-34.
-
(2006)
Mass Spectrom. Rev
, vol.25
, Issue.2
, pp. 215-234
-
-
Coute, Y.1
Burgess, J.A.2
Diaz, J.J.3
Chichester, C.4
Lisacek, F.5
Greco, A.6
Sanchez, J.C.7
-
56
-
-
34250836327
-
The multifunctional nucleolus
-
Boisvert, F. M.; van Koningsbruggen, S.; Navascues, J.; Lamond, A. I. The multifunctional nucleolus. Nat. Rev. Mol. Cell Biol. 2007, 8 (7), 574-85.
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, Issue.7
, pp. 574-585
-
-
Boisvert, F.M.1
van Koningsbruggen, S.2
Navascues, J.3
Lamond, A.I.4
-
57
-
-
33644874178
-
-
Leung, A. K.; Trinkle-Mulcahy, L.; Lam, Y. W.; Andersen, J. S.; Mann, M.; Lamond, A. I. NOPdb: Nucleolar Proteome Database. Nucleic Acids Res. 2006, 34 (Database issue), D218-20.
-
Leung, A. K.; Trinkle-Mulcahy, L.; Lam, Y. W.; Andersen, J. S.; Mann, M.; Lamond, A. I. NOPdb: Nucleolar Proteome Database. Nucleic Acids Res. 2006, 34 (Database issue), D218-20.
-
-
-
-
58
-
-
0037118052
-
TREX is a conserved complex coupling transcription with messenger RNA export
-
Strasser, K.; Masuda, S.; Mason, P.; Pfannstiel, J.; Oppizzi, M.; Rodriguez-Navarro, S.; Rondon, A. G.; Aguilera, A.; Struhl, K.; Reed, R.; Hurt, E. TREX is a conserved complex coupling transcription with messenger RNA export. Nature 2002, 417 (6886), 304-8.
-
(2002)
Nature
, vol.417
, Issue.6886
, pp. 304-308
-
-
Strasser, K.1
Masuda, S.2
Mason, P.3
Pfannstiel, J.4
Oppizzi, M.5
Rodriguez-Navarro, S.6
Rondon, A.G.7
Aguilera, A.8
Struhl, K.9
Reed, R.10
Hurt, E.11
-
59
-
-
0036512117
-
Messenger-RNA-binding proteins and the messages they carry
-
Dreyfuss, G.; Kim, V. N.; Kataoka, N. Messenger-RNA-binding proteins and the messages they carry. Nat. Rev. Mol. Cell Biol. 2002, 3 (3), 195-205.
-
(2002)
Nat. Rev. Mol. Cell Biol
, vol.3
, Issue.3
, pp. 195-205
-
-
Dreyfuss, G.1
Kim, V.N.2
Kataoka, N.3
-
60
-
-
34249096783
-
Intranucleolar sites of ribosome biogenesis defined by the localization of early binding ribosomal proteins
-
Kruger, T.; Zentgraf, H.; Scheer, U. Intranucleolar sites of ribosome biogenesis defined by the localization of early binding ribosomal proteins. J. Cell Biol. 2007, 177 (4), 573-8.
-
(2007)
J. Cell Biol
, vol.177
, Issue.4
, pp. 573-578
-
-
Kruger, T.1
Zentgraf, H.2
Scheer, U.3
-
61
-
-
34247391127
-
Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins
-
Lam, Y. W.; Lamond, A. I.; Mann, M.; Andersen, J. S. Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins. Curr. Biol. 2007, 17 (9), 749-60.
-
(2007)
Curr. Biol
, vol.17
, Issue.9
, pp. 749-760
-
-
Lam, Y.W.1
Lamond, A.I.2
Mann, M.3
Andersen, J.S.4
-
62
-
-
34249982906
-
Nuclear export and cytoplasmic maturation of ribosomal subunits
-
Zemp, I.; Kutay, U. Nuclear export and cytoplasmic maturation of ribosomal subunits. FEBS Lett. 2007, 581 (15), 2783-93.
-
(2007)
FEBS Lett
, vol.581
, Issue.15
, pp. 2783-2793
-
-
Zemp, I.1
Kutay, U.2
-
63
-
-
85052429959
-
The nuclear ubiquitin-proteasome system: Visualization of proteasomes, protein aggregates, and proteolysis in the cell nucleus
-
von Mikecz, A.; Chen, M.; Rockel, T.; Scharf, A. The nuclear ubiquitin-proteasome system: visualization of proteasomes, protein aggregates, and proteolysis in the cell nucleus. Methods Mol. Biol. 2008, 463, 191-202.
-
(2008)
Methods Mol. Biol
, vol.463
, pp. 191-202
-
-
von Mikecz, A.1
Chen, M.2
Rockel, T.3
Scharf, A.4
-
64
-
-
29244480602
-
Proteasomes degrade proteins in focal subdomains of the human cell nucleus
-
Rockel, T. D.; Stuhlmann, D.; von Mikecz, A. Proteasomes degrade proteins in focal subdomains of the human cell nucleus. J. Cell Sci. 2005, 118 (Pt. 22), 5231-42.
-
(2005)
J. Cell Sci
, vol.118
, Issue.PART. 22
, pp. 5231-5242
-
-
Rockel, T.D.1
Stuhlmann, D.2
von Mikecz, A.3
-
65
-
-
0028080463
-
TRiC-P5, a novel TCP1-related protein, is localized in the cytoplasm and in the nuclear matrix
-
Joly, E. C.; Tremblay, E.; Tanguay, R. M.; Wu, Y.; Bibor-Hardy, V. TRiC-P5, a novel TCP1-related protein, is localized in the cytoplasm and in the nuclear matrix. J. Cell Sci. 1994, 107 (Pt. 10), 2851-9.
-
(1994)
J. Cell Sci
, vol.107
, Issue.PART. 10
, pp. 2851-2859
-
-
Joly, E.C.1
Tremblay, E.2
Tanguay, R.M.3
Wu, Y.4
Bibor-Hardy, V.5
-
66
-
-
26944503145
-
Actin and myosin I in the nucleus: What next
-
de Lanerolle, P.; Johnson, T.; Hofmann, W. A. Actin and myosin I in the nucleus: what next. Nat. Struct. Mol. Biol. 2005, 12 (9), 742-6.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, Issue.9
, pp. 742-746
-
-
de Lanerolle, P.1
Johnson, T.2
Hofmann, W.A.3
-
67
-
-
0035997387
-
Nuclear actin and actin-related proteins in chromatin remodeling
-
Olave, I. A.; Reck-Peterson, S. L.; Crabtree, G. R. Nuclear actin and actin-related proteins in chromatin remodeling. Annu. Rev. Biochem. 2002, 71, 755-81.
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 755-781
-
-
Olave, I.A.1
Reck-Peterson, S.L.2
Crabtree, G.R.3
-
68
-
-
14644406268
-
GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7
-
van der Knaap, J. A.; Kumar, B. R.; Moshkin, Y. M.; Langenberg, K.; Krijgsveld, J.; Heck, A. J.; Karch, F.; Verrijzer, C. P. GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7. Mol. Cell 2005, 17 (5), 695-707.
-
(2005)
Mol. Cell
, vol.17
, Issue.5
, pp. 695-707
-
-
van der Knaap, J.A.1
Kumar, B.R.2
Moshkin, Y.M.3
Langenberg, K.4
Krijgsveld, J.5
Heck, A.J.6
Karch, F.7
Verrijzer, C.P.8
-
69
-
-
43449113530
-
Reversal of RNA polymerase II ubiquitylation by the ubiquitin protease Ubp3
-
Kvint, K.; Uhler, J. P.; Taschner, M. J.; Sigurdsson, S.; Erdjument-Bromage, H.; Tempst, P.; Svejstrup, J. Q. Reversal of RNA polymerase II ubiquitylation by the ubiquitin protease Ubp3. Mol. Cell 2008, 30 (4), 498-506.
-
(2008)
Mol. Cell
, vol.30
, Issue.4
, pp. 498-506
-
-
Kvint, K.1
Uhler, J.P.2
Taschner, M.J.3
Sigurdsson, S.4
Erdjument-Bromage, H.5
Tempst, P.6
Svejstrup, J.Q.7
-
70
-
-
37749026136
-
Phosphorylation of histone H3 at threonine 11 establishes a novel chromatin mark for transcriptional regulation
-
Metzger, E.; Yin, N.; Wissmann, M.; Kunowska, N.; Fischer, K.; Friedrichs, N.; Patnaik, D.; Higgins, J. M.; Potier, N.; Scheidtmann, K. H.; Buettner, R.; Schule, R. Phosphorylation of histone H3 at threonine 11 establishes a novel chromatin mark for transcriptional regulation. Nat. Cell Biol. 2008, 10 (1), 53-60.
-
(2008)
Nat. Cell Biol
, vol.10
, Issue.1
, pp. 53-60
-
-
Metzger, E.1
Yin, N.2
Wissmann, M.3
Kunowska, N.4
Fischer, K.5
Friedrichs, N.6
Patnaik, D.7
Higgins, J.M.8
Potier, N.9
Scheidtmann, K.H.10
Buettner, R.11
Schule, R.12
-
71
-
-
33750435187
-
Regulatory functions of nuclear hexokinase1 complex in glucose signaling
-
Cho, Y. H.; Yoo, S. D.; Sheen, J. Regulatory functions of nuclear hexokinase1 complex in glucose signaling. Cell 2006, 127 (3), 579-89.
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 579-589
-
-
Cho, Y.H.1
Yoo, S.D.2
Sheen, J.3
-
72
-
-
40449137922
-
Inhibition of glucokinase translocation by AMP-activated protein kinase is associated with phosphorylation of both GKRP and 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
-
Mukhtar, M. H.; Payne, V. A.; Arden, C.; Harbottle, A.; Khan, S.; Lange, A. J.; Agius, L. Inhibition of glucokinase translocation by AMP-activated protein kinase is associated with phosphorylation of both GKRP and 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. Am. J. Physiol.: Regul., Integr. Comp. Physiol. 2008, 294 (3), R766-74.
-
(2008)
Am. J. Physiol.: Regul., Integr. Comp. Physiol
, vol.294
, Issue.3
-
-
Mukhtar, M.H.1
Payne, V.A.2
Arden, C.3
Harbottle, A.4
Khan, S.5
Lange, A.J.6
Agius, L.7
-
73
-
-
33748298941
-
Nutrient regulates Tor1 nuclear localization and association with rDNA promoter
-
Li, H.; Tsang, C. K.; Watkins, M.; Bertram, P. G.; Zheng, X. F. Nutrient regulates Tor1 nuclear localization and association with rDNA promoter. Nature 2006, 442 (7106), 1058-61.
-
(2006)
Nature
, vol.442
, Issue.7106
, pp. 1058-1061
-
-
Li, H.1
Tsang, C.K.2
Watkins, M.3
Bertram, P.G.4
Zheng, X.F.5
-
74
-
-
33846566203
-
TOR-in(g) the nucleus
-
Tsang, C. K.; Zheng, X. F. TOR-in(g) the nucleus. Cell Cycle 2007, 6 (1), 25-9.
-
(2007)
Cell Cycle
, vol.6
, Issue.1
, pp. 25-29
-
-
Tsang, C.K.1
Zheng, X.F.2
-
75
-
-
0029818391
-
Prenylated isoforms of yeast casein kinase, I. including the novel Yck3p, suppress the gcs1 blockage of cell proliferation from stationary phase
-
Wang, X.; Hoekstra, M. F.; DeMaggio, A. J.; Dhillon, N.; Vancura, A.; Kuret, J.; Johnston, G. C.; Singer, R. A.; Prenylated isoforms of yeast casein kinase, I. including the novel Yck3p, suppress the gcs1 blockage of cell proliferation from stationary phase. Mol. Cell. Biol. 1996, 16 (10), 5375-85.
-
(1996)
Mol. Cell. Biol
, vol.16
, Issue.10
, pp. 5375-5385
-
-
Wang, X.1
Hoekstra, M.F.2
DeMaggio, A.J.3
Dhillon, N.4
Vancura, A.5
Kuret, J.6
Johnston, G.C.7
Singer, R.A.8
-
76
-
-
14544272335
-
Regulation of nuclear transport: Central role in development and transformation
-
Poon, I. K.; Jans, D. A. Regulation of nuclear transport: central role in development and transformation. Traffic 2005, 6 (3), 173-86.
-
(2005)
Traffic
, vol.6
, Issue.3
, pp. 173-186
-
-
Poon, I.K.1
Jans, D.A.2
-
77
-
-
0033598989
-
Transport of proteins and RNAs in and out of the nucleus
-
Nakielny, S.; Dreyfuss, G. Transport of proteins and RNAs in and out of the nucleus. Cell 1999, 99 (7), 677-90.
-
(1999)
Cell
, vol.99
, Issue.7
, pp. 677-690
-
-
Nakielny, S.1
Dreyfuss, G.2
-
78
-
-
0042830859
-
Nucleocytoplasmic transport: Taking an inventory
-
Fried, H.; Kutay, U. Nucleocytoplasmic transport: taking an inventory. Cell. Mol. Life Sci. 2003, 60 (8), 1659-88.
-
(2003)
Cell. Mol. Life Sci
, vol.60
, Issue.8
, pp. 1659-1688
-
-
Fried, H.1
Kutay, U.2
|