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Volumn 2, Issue , 2007, Pages

AgBase: A tool for systems biology in agricultural species

Author keywords

Aquaculture; Food crops; Functional genomics; Livestock; Metabolomics; Network analysis; Proteomics

Indexed keywords


EID: 67650035945     PISSN: None     EISSN: 17498848     Source Type: Journal    
DOI: 10.1079/PAVSNNR20072078     Document Type: Review
Times cited : (1)

References (168)
  • 1
    • 23144448699 scopus 로고    scopus 로고
    • GoPubMed: Exploring PubMed with the Gene Ontology
    • Doms A, Schroeder M. GoPubMed: exploring PubMed with the Gene Ontology. Nucleic Acids Research 2005;33(Web Server issue):W783-6.
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB SERVER ISSUE
    • Doms, A.1    Schroeder, M.2
  • 2
    • 0035161543 scopus 로고    scopus 로고
    • Genomes OnLine Database (GOLD): A monitor of genome projects world-wide
    • Bernal A, Ear U, Kyrpides N. Genomes OnLine Database (GOLD): a monitor of genome projects world-wide. Nucleic Acids Research 2001;29(1):126-7.
    • (2001) Nucleic Acids Research , vol.29 , Issue.1 , pp. 126-127
    • Bernal, A.1    Ear, U.2    Kyrpides, N.3
  • 5
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • Hillier LW, Miller W, Birney E, Warren W, Hardison RC, Ponting CP, et al. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004;432(7018):695-716.
    • (2004) Nature , vol.432 , Issue.7018 , pp. 695-716
    • Hillier, L.W.1    Miller, W.2    Birney, E.3    Warren, W.4    Hardison, R.C.5    Ponting, C.P.6
  • 6
    • 33750460281 scopus 로고    scopus 로고
    • Insights into social insects from the genome of the honeybee Apis mellifera
    • Honeybee Genome Sequencing Consortium
    • Honeybee Genome Sequencing Consortium. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 2006;443(7114):931-49.
    • (2006) Nature , vol.443 , Issue.7114 , pp. 931-949
  • 7
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project.
    • International Rice Genome Sequencing Project. The map-based sequence of the rice genome. Nature 2005;436(7052):793-800.
    • (2005) Nature , vol.436 , Issue.7052 , pp. 793-800
  • 8
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. Ssp. Indica)
    • Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 2002;296(5565):79-92.
    • (2002) Science , vol.296 , Issue.5565 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3    Wong, G.K.4    Li, S.5    Liu, B.6
  • 9
    • 33847344272 scopus 로고    scopus 로고
    • Management of microbiological safety of ready-to-eat meat products by mathematical modelling: Listeria monocytogenes as an example
    • Carrasco E, Valero A, Perez-Rodriguez F, Garcia-Gimeno RM, Zurera G. Management of microbiological safety of ready-to-eat meat products by mathematical modelling: Listeria monocytogenes as an example. International Journal of Food Microbiology 2007;114(2):221-6.
    • (2007) International Journal of Food Microbiology , vol.114 , Issue.2 , pp. 221-226
    • Carrasco, E.1    Valero, A.2    Perez-Rodriguez, F.3    Garcia-Gimeno, R.M.4    Zurera, G.5
  • 10
    • 12344297824 scopus 로고    scopus 로고
    • A whole-plant mathematical model for the phytoextraction of lead (Pb) by maize
    • Chrysafopoulou E, Kadukova J, Kalogerakis N. A whole-plant mathematical model for the phytoextraction of lead (Pb) by maize. Environment International 2005;31(2):255-62.
    • (2005) Environment International , vol.31 , Issue.2 , pp. 255-262
    • Chrysafopoulou, E.1    Kadukova, J.2    Kalogerakis, N.3
  • 11
    • 33745203527 scopus 로고    scopus 로고
    • Mathematical modelling of oxygen concentration in bovine and murine cumulus-oocyte complexes
    • Clark AR, Stokes YM, Lane M, Thompson JG. Mathematical modelling of oxygen concentration in bovine and murine cumulus-oocyte complexes. Reproduction 2006;131(6):999-1006.
    • (2006) Reproduction , vol.131 , Issue.6 , pp. 999-1006
    • Clark, A.R.1    Stokes, Y.M.2    Lane, M.3    Thompson, J.G.4
  • 12
    • 2342465501 scopus 로고    scopus 로고
    • Technical note: A proposed method to determine the extent of degradation of a feed in the rumen from the degradation profile obtained with the in vitro gas production technique using feces as the inoculum
    • Dhanoa MS, France J, Crompton LA, Mauricio RM, Kebreab E, Mills JA, et al. Technical note: A proposed method to determine the extent of degradation of a feed in the rumen from the degradation profile obtained with the in vitro gas production technique using feces as the inoculum. Journal of Animal Science 2004;82(3):733-46.
    • (2004) Journal of Animal Science , vol.82 , Issue.3 , pp. 733-746
    • Dhanoa, M.S.1    France, J.2    Crompton, L.A.3    Mauricio, R.M.4    Kebreab, E.5    Mills, J.A.6
  • 14
    • 35349001337 scopus 로고    scopus 로고
    • Comparative evaluation of mathematical functions to describe growth and efficiency of phosphorus utilization in growing pigs
    • Kebreab E, Schulin-Zeuthen M, Lopez S, Soler J, Dias RS, de Lange CF, et al. Comparative evaluation of mathematical functions to describe growth and efficiency of phosphorus utilization in growing pigs. Journal of Animal Science 2007;85:2498-507.
    • (2007) Journal of Animal Science , vol.85 , pp. 2498-2507
    • Kebreab, E.1    Schulin-Zeuthen, M.2    Lopez, S.3    Soler, J.4    Dias, R.S.5    De Lange, C.F.6
  • 15
    • 33644863963 scopus 로고    scopus 로고
    • What do -omics mean for the science and policy of the nutritional sciences?
    • Keusch GT. What do -omics mean for the science and policy of the nutritional sciences? American Journal of Clinical Nutrition 2006;83(2):520S-2S.
    • (2006) American Journal of Clinical Nutrition , vol.83 , Issue.2
    • Keusch, G.T.1
  • 16
    • 3343016762 scopus 로고    scopus 로고
    • Mathematical modeling for prediction of endo-xylanase activity and arabinoxylans concentration during mashing of barley malts for brewing
    • Li Y, Lu J, Gu G, Shi Z, Mao Z. Mathematical modeling for prediction of endo-xylanase activity and arabinoxylans concentration during mashing of barley malts for brewing. Biotechnology Letters 2004;26(10):779-85.
    • (2004) Biotechnology Letters , vol.26 , Issue.10 , pp. 779-785
    • Li, Y.1    Lu, J.2    Gu, G.3    Shi, Z.4    Mao, Z.5
  • 18
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • Kitano H. Systems biology: a brief overview. Science 2002;295(5560):1662- 4.
    • (2002) Science , vol.295 , Issue.5560 , pp. 1662-1664
    • Kitano, H.1
  • 19
    • 14844307659 scopus 로고    scopus 로고
    • Modelling gene networks at different organisational levels
    • Schlitt T, Brazma A. Modelling gene networks at different organisational levels. FEBS Letters 2005;579(8):1859-66.
    • (2005) FEBS Letters , vol.579 , Issue.8 , pp. 1859-1866
    • Schlitt, T.1    Brazma, A.2
  • 24
    • 34247554981 scopus 로고    scopus 로고
    • From functional genomics to systems biology
    • Ivakhno S. From functional genomics to systems biology. FEBS Journal 2007;274(10):2439-48.
    • (2007) FEBS Journal , vol.274 , Issue.10 , pp. 2439-2448
    • Ivakhno, S.1
  • 25
    • 34247847883 scopus 로고    scopus 로고
    • Natural and artificially induced genetic variability in crop and model plant species for plant systems biology
    • Rothan C, Causse M. Natural and artificially induced genetic variability in crop and model plant species for plant systems biology. EXS 2007;97:21-53.
    • (2007) EXS , vol.97 , pp. 21-53
    • Rothan, C.1    Causse, M.2
  • 26
    • 29244482315 scopus 로고    scopus 로고
    • Barriers to progress in systems biology
    • Cassman M. Barriers to progress in systems biology. Nature 2005;438(7071):1079.
    • (2005) Nature , vol.438 , Issue.7071 , pp. 1079
    • Cassman, M.1
  • 29
    • 0037288767 scopus 로고    scopus 로고
    • Systems biology: Integrating technology, biology, and computation
    • Hood L. Systems biology: integrating technology, biology, and computation. Mechanisms of Ageing and Development 2003;124(1):9-16.
    • (2003) Mechanisms of Ageing and Development , vol.124 , Issue.1 , pp. 9-16
    • Hood, L.1
  • 30
    • 85015077644 scopus 로고    scopus 로고
    • The digital code of DNA
    • Hood L, Galas D. The digital code of DNA. Nature 2003;421(6921):444-8.
    • (2003) Nature , vol.421 , Issue.6921 , pp. 444-448
    • Hood, L.1    Galas, D.2
  • 31
    • 0032818129 scopus 로고    scopus 로고
    • New institute to study systems biology
    • Agrawal A. New institute to study systems biology. Nature Biotechnology 1999;17(8):743-4.
    • (1999) Nature Biotechnology , vol.17 , Issue.8 , pp. 743-744
    • Agrawal, A.1
  • 34
    • 34247612307 scopus 로고    scopus 로고
    • Multiple high-throughput analyses monitor the response of E. Coli to perturbations
    • Ishii N, Nakahigashi K, Baba T, Robert M, Soga T, Kanai A, et al. Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science 2007;316(5824):593-7.
    • (2007) Science , vol.316 , Issue.5824 , pp. 593-597
    • Ishii, N.1    Nakahigashi, K.2    Baba, T.3    Robert, M.4    Soga, T.5    Kanai, A.6
  • 35
    • 0037173615 scopus 로고    scopus 로고
    • Functional profiling of the Saccharomyces cerevisiae genome
    • Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature 2002;418(6896):387-91.
    • (2002) Nature , vol.418 , Issue.6896 , pp. 387-391
    • Giaever, G.1    Chu, A.M.2    Ni, L.3    Connelly, C.4    Riles, L.5    Veronneau, S.6
  • 36
    • 34247464637 scopus 로고    scopus 로고
    • Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
    • Komurov K, White M. Revealing static and dynamic modular architecture of the eukaryotic protein interaction network. Molecular Systems Biology 2007;3:110.
    • (2007) Molecular Systems Biology , vol.3 , pp. 110
    • Komurov, K.1    White, M.2
  • 37
    • 20044381102 scopus 로고    scopus 로고
    • Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants
    • Palenchar PM, Kouranov A, Lejay LV, Coruzzi GM. Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants. Genome Biology 2004;5(11):R91.
    • (2004) Genome Biology , vol.5 , Issue.11
    • Palenchar, P.M.1    Kouranov, A.2    Lejay, L.V.3    Coruzzi, G.M.4
  • 38
    • 34147133691 scopus 로고    scopus 로고
    • Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
    • Gutierrez RA, Lejay LV, Dean A, Chiaromonte F, Shasha DE, Coruzzi GM. Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis. Genome Biology 2007;8(1):R7.
    • (2007) Genome Biology , vol.8 , Issue.1
    • Gutierrez, R.A.1    Lejay, L.V.2    Dean, A.3    Chiaromonte, F.4    Shasha, D.E.5    Coruzzi, G.M.6
  • 40
    • 33847682903 scopus 로고    scopus 로고
    • From genes to genomes: A new paradigm for studying fungal pathogenesis in Magnaporthe oryzae
    • Xu JR, Zhao X, Dean RA. From genes to genomes: a new paradigm for studying fungal pathogenesis in Magnaporthe oryzae. Advances in Genetics 2007;57:175-218.
    • (2007) Advances in Genetics , vol.57 , pp. 175-218
    • Xu, J.R.1    Zhao, X.2    Dean, R.A.3
  • 41
    • 34447311672 scopus 로고    scopus 로고
    • MedicCyc: A biochemical pathway database for Medicago truncatula
    • Urbanczyk-Wochniak E, Sumner LW. MedicCyc: a biochemical pathway database for Medicago truncatula. Bioinformatics 2007;23(11):1418-23.
    • (2007) Bioinformatics , vol.23 , Issue.11 , pp. 1418-1423
    • Urbanczyk-Wochniak, E.1    Sumner, L.W.2
  • 42
    • 33747222456 scopus 로고    scopus 로고
    • Comparison of transcripts in Phalaenopsis bellina and Phalaenopsis equestris (Orchidaceae) flowers to deduce monoterpene biosynthesis pathway
    • Hsiao YY, Tsai WC, Kuoh CS, Huang TH, Wang HC, Wu TS, et al. Comparison of transcripts in Phalaenopsis bellina and Phalaenopsis equestris (Orchidaceae) flowers to deduce monoterpene biosynthesis pathway. BMC Plant Biology 2006;6:14.
    • (2006) BMC Plant Biology , vol.6 , pp. 14
    • Hsiao, Y.Y.1    Tsai, W.C.2    Kuoh, C.S.3    Huang, T.H.4    Wang, H.C.5    Wu, T.S.6
  • 44
    • 34248154149 scopus 로고    scopus 로고
    • Modeling the proteome of a Marek's disease transformed cell line: A natural animal model for CD30 overexpressing lymphomas
    • Buza JJ, Burgess SC. Modeling the proteome of a Marek's disease transformed cell line: a natural animal model for CD30 overexpressing lymphomas. Proteomics 2007;7(8):1316-26.
    • (2007) Proteomics , vol.7 , Issue.8 , pp. 1316-1326
    • Buza, J.J.1    Burgess, S.C.2
  • 46
    • 33644876239 scopus 로고    scopus 로고
    • VMD: A community annotation database for oomycetes and microbial genomes
    • Tripathy S, Pandey VN, Fang B, Salas F, Tyler BM. VMD: a community annotation database for oomycetes and microbial genomes. Nucleic Acids Research 2006;34(Database issue):D379-81.
    • (2006) Nucleic Acids Research , vol.34 , Issue.DATABASE ISSUE
    • Tripathy, S.1    Pandey, V.N.2    Fang, B.3    Salas, F.4    Tyler, B.M.5
  • 49
    • 20144381803 scopus 로고    scopus 로고
    • Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
    • Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biology 2005;6(1):R9.
    • (2005) Genome Biology , vol.6 , Issue.1
    • Desiere, F.1    Deutsch, E.W.2    Nesvizhskii, A.I.3    Mallick, P.4    King, N.L.5    Eng, J.K.6
  • 50
    • 26944498633 scopus 로고    scopus 로고
    • Prediction and validation of microRNAs and their targets
    • Bentwich I. Prediction and validation of microRNAs and their targets. FEBS Letters 2005;579(26):5904-10.
    • (2005) FEBS Letters , vol.579 , Issue.26 , pp. 5904-5910
    • Bentwich, I.1
  • 51
    • 34249033020 scopus 로고    scopus 로고
    • MicroRNA detection and target prediction: Integration of computational and experimental approaches
    • Chaudhuri K, Chatterjee R. MicroRNA detection and target prediction: integration of computational and experimental approaches. DNA Cell Biology 2007;26(5):321-37.
    • (2007) DNA Cell Biology , vol.26 , Issue.5 , pp. 321-337
    • Chaudhuri, K.1    Chatterjee, R.2
  • 53
  • 57
    • 33847108451 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    • Gu Z, Eleswarapu S, Jiang H. Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland. FEBS Letters 2007;581(5):981-8.
    • (2007) FEBS Letters , vol.581 , Issue.5 , pp. 981-988
    • Gu, Z.1    Eleswarapu, S.2    Jiang, H.3
  • 58
    • 19944431653 scopus 로고    scopus 로고
    • Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
    • Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, et al. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Research 2005;15(1):174-83.
    • (2005) Genome Research , vol.15 , Issue.1 , pp. 174-183
    • Hubbard, S.J.1    Grafham, D.V.2    Beattie, K.J.3    Overton, I.M.4    McLaren, S.R.5    Croning, M.D.6
  • 59
    • 18044382788 scopus 로고    scopus 로고
    • Genetic imprinting: Conflict at the Callipyge locus
    • Lewis A, Redrup L. Genetic imprinting: conflict at the Callipyge locus . Current Biology 2005;15(8):R291-4.
    • (2005) Current Biology , vol.15 , Issue.8
    • Lewis, A.1    Redrup, L.2
  • 61
    • 33745577150 scopus 로고    scopus 로고
    • A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep
    • Clop A, Marcq F, Takeda H, Pirottin D, Tordoir X, Bibe B, et al. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nature Genetics 2006;38(7):813-8.
    • (2006) Nature Genetics , vol.38 , Issue.7 , pp. 813-818
    • Clop, A.1    Marcq, F.2    Takeda, H.3    Pirottin, D.4    Tordoir, X.5    Bibe, B.6
  • 62
    • 33847755965 scopus 로고    scopus 로고
    • New porcine microRNA genes found by homology search
    • Kim HJ, Cui XS, Kim EJ, Kim WJ, Kim NH. New porcine microRNA genes found by homology search. Genome 2006;49(10):1283-6.
    • (2006) Genome , vol.49 , Issue.10 , pp. 1283-1286
    • Kim, H.J.1    Cui, X.S.2    Kim, E.J.3    Kim, W.J.4    Kim, N.H.5
  • 63
    • 25144458451 scopus 로고    scopus 로고
    • Mapping and expression studies of the mir17-92 cluster on pig chromosome 11
    • Sawera M, Gorodkin J, Cirera S, Fredholm M. Mapping and expression studies of the mir17-92 cluster on pig chromosome 11. Mammalian Genome 2005;16(8):594-8.
    • (2005) Mammalian Genome , vol.16 , Issue.8 , pp. 594-598
    • Sawera, M.1    Gorodkin, J.2    Cirera, S.3    Fredholm, M.4
  • 64
    • 26944437949 scopus 로고    scopus 로고
    • MicroRNA biogenesis and function in plants
    • Chen X. MicroRNA biogenesis and function in plants. FEBS Letters 2005;579(26):5923-31.
    • (2005) FEBS Letters , vol.579 , Issue.26 , pp. 5923-5931
    • Chen, X.1
  • 65
    • 34247884486 scopus 로고    scopus 로고
    • Regulatory small RNAs in plants
    • Johnson C, Sundaresan V. Regulatory small RNAs in plants. EXS 2007;97:99-113.
    • (2007) EXS , vol.97 , pp. 99-113
    • Johnson, C.1    Sundaresan, V.2
  • 66
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project
    • ENCODE Project Consortium
    • ENCODE Project Consortium. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004;306(5696):636-40.
    • (2004) Science , vol.306 , Issue.5696 , pp. 636-640
  • 67
    • 34250369629 scopus 로고    scopus 로고
    • Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
    • Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, Drenkow J, et al. Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Research 2007;17(6):746-59.
    • (2007) Genome Research , vol.17 , Issue.6 , pp. 746-759
    • Denoeud, F.1    Kapranov, P.2    Ucla, C.3    Frankish, A.4    Castelo, R.5    Drenkow, J.6
  • 68
    • 34250377325 scopus 로고    scopus 로고
    • Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
    • Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, et al. Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution. Genome Research 2007;17(6):839-51.
    • (2007) Genome Research , vol.17 , Issue.6 , pp. 839-851
    • Zheng, D.1    Frankish, A.2    Baertsch, R.3    Kapranov, P.4    Reymond, A.5    Choo, S.W.6
  • 69
    • 34250376884 scopus 로고    scopus 로고
    • A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
    • Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, et al. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Research 2007;17(6):960-4.
    • (2007) Genome Research , vol.17 , Issue.6 , pp. 960-964
    • Blankenberg, D.1    Taylor, J.2    Schenck, I.3    He, J.4    Zhang, Y.5    Ghent, M.6
  • 72
    • 34047202181 scopus 로고    scopus 로고
    • Deciphering protein-protein interactions. Part I. Experimental techniques and databases
    • Shoemaker BA, Panchenko AR. Deciphering protein-protein interactions. Part I. Experimental techniques and databases. PLoS Computational Biology 2007;3(3):e42.
    • (2007) PLoS Computational Biology , vol.3 , Issue.3
    • Shoemaker, B.A.1    Panchenko, A.R.2
  • 73
    • 1842430185 scopus 로고    scopus 로고
    • Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants
    • Rohila JS, Chen M, Cerny R, Fromm ME. Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant Journal 2004;38(1):172-81.
    • (2004) Plant Journal , vol.38 , Issue.1 , pp. 172-181
    • Rohila, J.S.1    Chen, M.2    Cerny, R.3    Fromm, M.E.4
  • 74
    • 33646831324 scopus 로고    scopus 로고
    • Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice
    • Rohila JS, Chen M, Chen S, Chen J, Cerny R, Dardick C, et al. Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice. Plant Journal 2006;46(1):1-13.
    • (2006) Plant Journal , vol.46 , Issue.1 , pp. 1-13
    • Rohila, J.S.1    Chen, M.2    Chen, S.3    Chen, J.4    Cerny, R.5    Dardick, C.6
  • 76
    • 13444274741 scopus 로고    scopus 로고
    • Gene ontology: Looking backwards and forwards
    • Lewis SE. Gene ontology: looking backwards and forwards. Genome Biology 2005;6(1):103.
    • (2005) Genome Biology , vol.6 , Issue.1 , pp. 103
    • Lewis, S.E.1
  • 78
    • 9144252016 scopus 로고    scopus 로고
    • The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with gene ontology
    • Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, et al. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with gene ontology. Nucleic Acids Research 2004;32(Database issue):D262-6.
    • (2004) Nucleic Acids Research , vol.32 , Issue.DATABASE ISSUE
    • Camon, E.1    Magrane, M.2    Barrell, D.3    Lee, V.4    Dimmer, E.5    Maslen, J.6
  • 79
    • 34547771661 scopus 로고    scopus 로고
    • Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks
    • Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I. Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks. BMC Bioinformatics 2007;8(1):243.
    • (2007) BMC Bioinformatics , vol.8 , Issue.1 , pp. 243
    • Daraselia, N.1    Yuryev, A.2    Egorov, S.3    Mazo, I.4    Ispolatov, I.5
  • 81
    • 1542271409 scopus 로고    scopus 로고
    • Predicting protein function from protein/protein interaction data: A probabilistic approach
    • Letovsky S, Kasif S. Predicting protein function from protein/protein interaction data: a probabilistic approach. Bioinformatics 2003;19 Suppl 1:i197-204.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Letovsky, S.1    Kasif, S.2
  • 84
    • 33644833873 scopus 로고    scopus 로고
    • Effects of subminimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome
    • Nanduri B, Lawrence ML, Boyle CR, Ramkumar M, Burgess SC. Effects of subminimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome. Journal of Proteome Research 2006;5(3):572-80.
    • (2006) Journal of Proteome Research , vol.5 , Issue.3 , pp. 572-580
    • Nanduri, B.1    Lawrence, M.L.2    Boyle, C.R.3    Ramkumar, M.4    Burgess, S.C.5
  • 86
    • 33846836962 scopus 로고    scopus 로고
    • Animal QTLdb: Beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information
    • Hu ZL, Reecy JM. Animal QTLdb: beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information. Mammalian Genome 2007;18(1):1-4.
    • (2007) Mammalian Genome , vol.18 , Issue.1 , pp. 1-4
    • Hu, Z.L.1    Reecy, J.M.2
  • 88
    • 34548244115 scopus 로고    scopus 로고
    • Gallus expression in situ hybridization analysis: A chicken embryo gene expression database
    • Antin PB, Kaur S, Stanislaw S, Davey S, Konieczka JH, Yatskievych TA, et al. Gallus expression in situ hybridization analysis: a chicken embryo gene expression database. Poultry Science 2007;86(7):1472-7.
    • (2007) Poultry Science , vol.86 , Issue.7 , pp. 1472-1477
    • Antin, P.B.1    Kaur, S.2    Stanislaw, S.3    Davey, S.4    Konieczka, J.H.5    Yatskievych, T.A.6
  • 89
    • 34250706411 scopus 로고    scopus 로고
    • Involving undergraduates in the annotation and analysis of global gene expression studies: Creation of a maize shoot apical meristem expression database
    • Buckner B, Beck J, Browning K, Fritz A, Grantham L, Hoxha E, et al. Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics 2007;176(2):741-7.
    • (2007) Genetics , vol.176 , Issue.2 , pp. 741-747
    • Buckner, B.1    Beck, J.2    Browning, K.3    Fritz, A.4    Grantham, L.5    Hoxha, E.6
  • 92
    • 33644876030 scopus 로고    scopus 로고
    • Tomato Expression Database (TED): A suite of data presentation and analysis tools
    • Fei Z, Tang X, Alba R, Giovannoni J. Tomato Expression Database (TED): a suite of data presentation and analysis tools. Nucleic Acids Research 2006;34(Database issue):D766-70.
    • (2006) Nucleic Acids Research , vol.34 , Issue.DATABASE ISSUE
    • Fei, Z.1    Tang, X.2    Alba, R.3    Giovannoni, J.4
  • 93
    • 33644896212 scopus 로고    scopus 로고
    • The role of mass spectrometry in plant systems biology
    • Glinski M, Weckwerth W. The role of mass spectrometry in plant systems biology. Mass Spectrometry Review 2006;25(2):173-214.
    • (2006) Mass Spectrometry Review , vol.25 , Issue.2 , pp. 173-214
    • Glinski, M.1    Weckwerth, W.2
  • 96
    • 33947106038 scopus 로고    scopus 로고
    • Contribution of research with farm animals to protein metabolism concepts: A historical perspective
    • Bergen WG. Contribution of research with farm animals to protein metabolism concepts: a historical perspective. Journal of Nutrition 2007;137(3):706-10.
    • (2007) Journal of Nutrition , vol.137 , Issue.3 , pp. 706-710
    • Bergen, W.G.1
  • 98
    • 33845973020 scopus 로고    scopus 로고
    • Quantitative comparison of caste differences in honeybee hemolymph
    • Chan QW, Howes CG, Foster LJ. Quantitative comparison of caste differences in honeybee hemolymph. Molecular and Cellular Proteomics 2006;5(12):2252-62.
    • (2006) Molecular and Cellular Proteomics , vol.5 , Issue.12 , pp. 2252-2262
    • Chan, Q.W.1    Howes, C.G.2    Foster, L.J.3
  • 99
  • 102
    • 29544450310 scopus 로고    scopus 로고
    • Proteomic analysis using an unfinished bacterial genome: The effects of subminimum inhibitory concentrations of antibiotics on Mannheimia haemolytica virulence factor expression
    • Nanduri B, Lawrence ML, Vanguri S, Burgess SC. Proteomic analysis using an unfinished bacterial genome: the effects of subminimum inhibitory concentrations of antibiotics on Mannheimia haemolytica virulence factor expression. Proteomics 2005;5(18):4852-63.
    • (2005) Proteomics , vol.5 , Issue.18 , pp. 4852-4863
    • Nanduri, B.1    Lawrence, M.L.2    Vanguri, S.3    Burgess, S.C.4
  • 103
    • 17444392125 scopus 로고    scopus 로고
    • Application of isotope coded affinity tag (ICAT) analysis for the identification of differentially expressed proteins following infection of atlantic salmon (Salmo salar) with infectious hematopoietic necrosis virus (IHNV) or Renibacterium salmoninarum (BKD)
    • Booy AT, Haddow JD, Ohlund LB, Hardie DB, Olafson RW. Application of isotope coded affinity tag (ICAT) analysis for the identification of differentially expressed proteins following infection of atlantic salmon (Salmo salar) with infectious hematopoietic necrosis virus (IHNV) or Renibacterium salmoninarum (BKD). Journal of Proteome Research 2005;4(2):325-34.
    • (2005) Journal of Proteome Research , vol.4 , Issue.2 , pp. 325-334
    • Booy, A.T.1    Haddow, J.D.2    Ohlund, L.B.3    Hardie, D.B.4    Olafson, R.W.5
  • 105
    • 17644385255 scopus 로고    scopus 로고
    • Monitoring food quality by microfluidic electrophoresis, gas chromatography, and mass spectrometry techniques: Effects of aquaculture on the sea bass (Dicentrarchus labrax)
    • Monti G, De Napoli L, Mainolfi P, Barone R, Guida M, Marino G, et al. Monitoring food quality by microfluidic electrophoresis, gas chromatography, and mass spectrometry techniques: effects of aquaculture on the sea bass (Dicentrarchus labrax). Analytical Chemistry 2005;77(8):2587-94.
    • (2005) Analytical Chemistry , vol.77 , Issue.8 , pp. 2587-2594
    • Monti, G.1    De Napoli, L.2    Mainolfi, P.3    Barone, R.4    Guida, M.5    Marino, G.6
  • 106
    • 0035211290 scopus 로고    scopus 로고
    • Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or 'interologs'
    • Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, et al. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or 'interologs'. Genome Research 2001;11(12):2120-6.
    • (2001) Genome Research , vol.11 , Issue.12 , pp. 2120-2126
    • Matthews, L.R.1    Vaglio, P.2    Reboul, J.3    Ge, H.4    Davis, B.P.5    Garrels, J.6
  • 107
    • 3042569597 scopus 로고    scopus 로고
    • Annotation transfer between genomes: Protein-protein interologs and protein-DNA regulogs
    • Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, Han JD, et al. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. Genome Research 2004;14(6):1107-18.
    • (2004) Genome Research , vol.14 , Issue.6 , pp. 1107-1118
    • Yu, H.1    Luscombe, N.M.2    Lu, H.X.3    Zhu, X.4    Xia, Y.5    Han, J.D.6
  • 108
    • 0028457443 scopus 로고
    • Restructuring the genome data base: A model for a federation of biological databases
    • Fasman KH. Restructuring the genome data base: a model for a federation of biological databases. Journal of Computational Biology 1994;1(2):165-71.
    • (1994) Journal of Computational Biology , vol.1 , Issue.2 , pp. 165-171
    • Fasman, K.H.1
  • 109
    • 39049185690 scopus 로고    scopus 로고
    • An integrated biomedical knowledge extraction and analysis platform: Using federated search and document clustering technology
    • Taylor DP. An integrated biomedical knowledge extraction and analysis platform: using federated search and document clustering technology. Methods in Molecular Biology 2007;356:293-300.
    • (2007) Methods in Molecular Biology , vol.356 , pp. 293-300
    • Taylor, D.P.1
  • 110
    • 0036085549 scopus 로고    scopus 로고
    • MagnaportheDB: A federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea
    • Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, et al. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research 2002;30(1):121-4.
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 121-124
    • Martin, S.L.1    Blackmon, B.P.2    Rajagopalan, R.3    Houfek, T.D.4    Sceeles, R.G.5    Denn, S.O.6
  • 111
    • 0037935183 scopus 로고    scopus 로고
    • BioMOBY: An open source biological web services proposal
    • Wilkinson MD, Links M. BioMOBY: an open source biological web services proposal. Briefings in Bioinformatics 2002;3(4):331-41.
    • (2002) Briefings in Bioinformatics , vol.3 , Issue.4 , pp. 331-341
    • Wilkinson, M.D.1    Links, M.2
  • 112
    • 2942586988 scopus 로고    scopus 로고
    • The PlaNet consortium: A network of European plant databases connecting plant genome data in an integrated biological knowledge resource
    • Schoof H, Ernst R, Mayer KFX. The PlaNet consortium: a network of European plant databases connecting plant genome data in an integrated biological knowledge resource. Comparative Functional Genomics 2004;5:184-9.
    • (2004) Comparative Functional Genomics , vol.5 , pp. 184-189
    • Schoof, H.1    Ernst, R.2    Mayer, K.F.X.3
  • 113
    • 27244434525 scopus 로고    scopus 로고
    • BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case
    • Wilkinson M, Schoof H, Ernst R, Haase D. BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case. Plant Physiology 2005;138(1):5-17.
    • (2005) Plant Physiology , vol.138 , Issue.1 , pp. 5-17
    • Wilkinson, M.1    Schoof, H.2    Ernst, R.3    Haase, D.4
  • 115
    • 10244255212 scopus 로고    scopus 로고
    • Taverna: A tool for the composition and enactment of bioinformatics workflows
    • Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, et al. Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 2004;20(17):3045-54.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3045-3054
    • Oinn, T.1    Addis, M.2    Ferris, J.3    Marvin, D.4    Senger, M.5    Greenwood, M.6
  • 116
    • 33845637822 scopus 로고    scopus 로고
    • BioMoby extensions to the Taverna workflow management and enactment software
    • Kawas E, Senger M, Wilkinson MD. BioMoby extensions to the Taverna workflow management and enactment software. BMC Bioinformatics 2006;7:523.
    • (2006) BMC Bioinformatics , vol.7 , pp. 523
    • Kawas, E.1    Senger, M.2    Wilkinson, M.D.3
  • 117
    • 34547886125 scopus 로고    scopus 로고
    • BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations
    • Kerhornou A, Guigo R. BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations. Bioinformatics 2007;23(14):1831-3.
    • (2007) Bioinformatics , vol.23 , Issue.14 , pp. 1831-1833
    • Kerhornou, A.1    Guigo, R.2
  • 118
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Research 2003;13(11):2498-504.
    • (2003) Genome Research , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6
  • 120
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
    • Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003;19(4):524-31.
    • (2003) Bioinformatics , vol.19 , Issue.4 , pp. 524-531
    • Hucka, M.1    Finney, A.2    Sauro, H.M.3    Bolouri, H.4    Doyle, J.C.5    Kitano, H.6
  • 121
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • Chen K, Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nature Review Genetics 2007;8(2):93-103.
    • (2007) Nature Review Genetics , vol.8 , Issue.2 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 122
    • 34249787308 scopus 로고    scopus 로고
    • Roles of dynamic and reversible histone acetylation in plant development and polyploidy
    • Chen ZJ, Tian L. Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochemical et Biophysica Acta 2007;1769(5-6):295-307.
    • (2007) Biochemical et Biophysica Acta , vol.1769 , Issue.5-6 , pp. 295-307
    • Chen, Z.J.1    Tian, L.2
  • 123
    • 33846934729 scopus 로고    scopus 로고
    • Transcriptional regulation in wood formation
    • Demura T, Fukuda H. Transcriptional regulation in wood formation. Trends in Plant Science 2007;12(2):64-70.
    • (2007) Trends in Plant Science , vol.12 , Issue.2 , pp. 64-70
    • Demura, T.1    Fukuda, H.2
  • 124
    • 33847298964 scopus 로고    scopus 로고
    • The gateway to transcription: Identifying, characterizing and understanding promoters in the eukaryotic genome
    • Heintzman ND, Ren B. The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome. Cellular and Molecular Life Sciences 2007;64(4):386-400.
    • (2007) Cellular and Molecular Life Sciences , vol.64 , Issue.4 , pp. 386-400
    • Heintzman, N.D.1    Ren, B.2
  • 125
    • 23944483135 scopus 로고    scopus 로고
    • Post-transcriptional control of gene expression: A genome-wide perspective
    • Mata J, Marguerat S, Bahler J. Post-transcriptional control of gene expression: a genome-wide perspective. Trends in Biochemical Sciences 2005;30(9):506-14.
    • (2005) Trends in Biochemical Sciences , vol.30 , Issue.9 , pp. 506-514
    • Mata, J.1    Marguerat, S.2    Bahler, J.3
  • 126
    • 33947384131 scopus 로고    scopus 로고
    • Cytoplasmatic post-transcriptional regulation and intracellular signalling
    • Sunnerhagen P. Cytoplasmatic post-transcriptional regulation and intracellular signalling. Molecular Genetics and Genomics. 2007;277(4):341-55.
    • (2007) Molecular Genetics and Genomics , vol.277 , Issue.4 , pp. 341-355
    • Sunnerhagen, P.1
  • 129
    • 33846053464 scopus 로고    scopus 로고
    • miRGen: A database for the study of animal microRNA genomic organization and function
    • Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG. miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Research 2007;35(Database issue):D149-55.
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Megraw, M.1    Sethupathy, P.2    Corda, B.3    Hatzigeorgiou, A.G.4
  • 132
    • 0042823653 scopus 로고    scopus 로고
    • Concerted simulations reveal how peroxidase compound III formation results in cellular oscillations
    • Gabdoulline RR, Kummer U, Olsen LF, Wade RC. Concerted simulations reveal how peroxidase compound III formation results in cellular oscillations. Biophysical Journal 2003;85(3):1421-8.
    • (2003) Biophysical Journal , vol.85 , Issue.3 , pp. 1421-1428
    • Gabdoulline, R.R.1    Kummer, U.2    Olsen, L.F.3    Wade, R.C.4
  • 134
    • 33747161085 scopus 로고    scopus 로고
    • Software tools that facilitate kinetic modelling with large data sets: An example using growth modelling in sugarcane
    • Uys L, Hofmeyr JH, Snoep JL, Rohwer JM. Software tools that facilitate kinetic modelling with large data sets: an example using growth modelling in sugarcane. IEE Proceedings Systems Biology 2006;153(5):385-9.
    • (2006) IEE Proceedings Systems Biology , vol.153 , Issue.5 , pp. 385-389
    • Uys, L.1    Hofmeyr, J.H.2    Snoep, J.L.3    Rohwer, J.M.4
  • 135
    • 34547654118 scopus 로고    scopus 로고
    • Kinetic model of sucrose accumulation in maturing sugarcane culm tissue
    • Uys L, Botha FC, Hofmeyr JH, Rohwer JM. Kinetic model of sucrose accumulation in maturing sugarcane culm tissue. Phytochemistry 2007;68(16-18):2375-92.
    • (2007) Phytochemistry , vol.68 , Issue.16-18 , pp. 2375-2392
    • Uys, L.1    Botha, F.C.2    Hofmeyr, J.H.3    Rohwer, J.M.4
  • 138
    • 0035478586 scopus 로고    scopus 로고
    • The Virtual Cell: A software environment for computational cell biology
    • Loew LM, Schaff JC. The Virtual Cell: a software environment for computational cell biology. Trends Biotechnology 2001;19(10):401-6.
    • (2001) Trends Biotechnology , vol.19 , Issue.10 , pp. 401-406
    • Loew, L.M.1    Schaff, J.C.2
  • 139
    • 4544344218 scopus 로고    scopus 로고
    • Web-based kinetic modelling using JWS Online
    • Olivier BG, Snoep JL. Web-based kinetic modelling using JWS Online. Bioinformatics 2004;20(13):2143-4.
    • (2004) Bioinformatics , vol.20 , Issue.13 , pp. 2143-2144
    • Olivier, B.G.1    Snoep, J.L.2
  • 140
    • 33646203362 scopus 로고    scopus 로고
    • WebCell: A web-based environment for kinetic modeling and dynamic simulation of cellular networks
    • Lee DY, Yun C, Cho A, Hou BK, Park S, Lee SY. WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks. Bioinformatics 2006;22(9):1150-1.
    • (2006) Bioinformatics , vol.22 , Issue.9 , pp. 1150-1151
    • Lee, D.Y.1    Yun, C.2    Cho, A.3    Hou, B.K.4    Park, S.5    Lee, S.Y.6
  • 141
    • 33644877164 scopus 로고    scopus 로고
    • BioModels Database: A free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
    • Le Novere N, Bornstein B, Broicher A, Courtot M, Donizelli M, Dharuri H, et al. BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Research 2006;34:D689-91.
    • (2006) Nucleic Acids Research , vol.34
    • Le Novere, N.1    Bornstein, B.2    Broicher, A.3    Courtot, M.4    Donizelli, M.5    Dharuri, H.6
  • 143
    • 0035448427 scopus 로고    scopus 로고
    • Analysis of sucrose accumulation in the sugar cane culm on the basis of in vitro kinetic data
    • Rohwer JM, Botha FC. Analysis of sucrose accumulation in the sugar cane culm on the basis of in vitro kinetic data. Biochemical Journal 2001;358(Pt 2):437-45.
    • (2001) Biochemical Journal , vol.358 , Issue.PART 2 , pp. 437-445
    • Rohwer, J.M.1    Botha, F.C.2
  • 146
    • 13444283777 scopus 로고    scopus 로고
    • PlantMarkers - A database of predicted molecular markers from plants
    • Rudd S, Schoof H, Mayer K. PlantMarkers - a database of predicted molecular markers from plants. Nucleic Acids Research 2005;33(Database issue):D628-32.
    • (2005) Nucleic Acids Research , vol.33 , Issue.DATABASE ISSUE
    • Rudd, S.1    Schoof, H.2    Mayer, K.3
  • 147
    • 33846113649 scopus 로고    scopus 로고
    • PlantQTL-GE: A database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information
    • Zeng H, Luo L, Zhang W, Zhou J, Li Z, Liu H, et al. PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information. Nucleic Acids Research 2007;35(Database issue):D879-82.
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Zeng, H.1    Luo, L.2    Zhang, W.3    Zhou, J.4    Li, Z.5    Liu, H.6
  • 148
    • 70349230333 scopus 로고    scopus 로고
    • Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max
    • Klink VP, Overall CC, Matthews BF. Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max. Gene Regulation and Systems Biology 2007;2:1-17.
    • (2007) Gene Regulation and Systems Biology , vol.2 , pp. 1-17
    • Klink, V.P.1    Overall, C.C.2    Matthews, B.F.3
  • 150
    • 33646358998 scopus 로고    scopus 로고
    • Prediction of yeast protein-protein interaction network: Insights from the gene ontology and annotations
    • Wu X, Zhu L, Guo J, Zhang DY, Lin K. Prediction of yeast protein-protein interaction network: insights from the gene ontology and annotations. Nucleic Acids Research 2006;34(7):2137-50.
    • (2006) Nucleic Acids Research , vol.34 , Issue.7 , pp. 2137-2150
    • Wu, X.1    Zhu, L.2    Guo, J.3    Zhang, D.Y.4    Lin, K.5
  • 152
    • 33846066202 scopus 로고    scopus 로고
    • PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences
    • Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, et al. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Nucleic Acids Research 2007;35(Database issue):D650-3.
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Uenishi, H.1    Eguchi-Ogawa, T.2    Shinkai, H.3    Okumura, N.4    Suzuki, K.5    Toki, D.6
  • 154
    • 33846086800 scopus 로고    scopus 로고
    • STRING 7 - recent developments in the integration and prediction of protein interactions
    • von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Kruger B, et al. STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Research 2007;35(Database issue):D358-62.
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Von Mering, C.1    Jensen, L.J.2    Kuhn, M.3    Chaffron, S.4    Doerks, T.5    Kruger, B.6
  • 156
    • 33846041069 scopus 로고    scopus 로고
    • PathoPlant: A platform for microarray expression data to analyze co-regulated genes involved in plant defense responses
    • Bulow L, Schindler M, Hehl R. PathoPlant: a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses. Nucleic Acids Research 2007;35(Database issue):D841-5.
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Bulow, L.1    Schindler, M.2    Hehl, R.3
  • 159
    • 33846102413 scopus 로고    scopus 로고
    • MIPSPlantsDB - plant database resource for integrative and comparative plant genome research
    • Spannagl M, Noubibou O, Haase D, Yang L, Gundlach H, Hindemitt T, et al. MIPSPlantsDB - plant database resource for integrative and comparative plant genome research. Nucleic Acids Research 2007;35(Database issue):D834-40.
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Spannagl, M.1    Noubibou, O.2    Haase, D.3    Yang, L.4    Gundlach, H.5    Hindemitt, T.6
  • 160
    • 34447543690 scopus 로고    scopus 로고
    • METANNOGEN: Compiling features of biochemical reactions needed for the reconstruction of metabolic networks
    • Gille C, Hoffmann S, Holzhutter HG. METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks. BMC Systems Biology 2007;1:5.
    • (2007) BMC Systems Biology , vol.1 , pp. 5
    • Gille, C.1    Hoffmann, S.2    Holzhutter, H.G.3
  • 163
    • 33646884846 scopus 로고    scopus 로고
    • DRTF: A database of rice transcription factors
    • Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, et al. DRTF: a database of rice transcription factors. Bioinformatics 2006;22(10):1286-7.
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1286-1287
    • Gao, G.1    Zhong, Y.2    Guo, A.3    Zhu, Q.4    Tang, W.5    Zheng, W.6
  • 165
    • 33846105271 scopus 로고    scopus 로고
    • AthaMap web tools for the analysis and identification of co-regulated genes
    • Galuschka C, Schindler M, Bulow L, Hehl R. AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Research 2007;35(Database issue):D857-62.
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Galuschka, C.1    Schindler, M.2    Bulow, L.3    Hehl, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.