Sungear: Interactive visualization and functional analysis of genomic datasets

Bioinformatics

Volumn 23, Issue 2, 2007, Pages 259-261

  Poultney, Christopher S ^a   Gutiérrez, Rodrigo A ^b,c   Katari, Manpreet S ^b   Gifford, Miriam L ^b   Paley, W Bradford ^d   Coruzzi, Gloria M ^b   Shasha, Dennis E ^a  

^a NEW YORK UNIVERSITY   (United States)

^b NEW YORK UNIVERSITY   (United States)

^c PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^d Digital Image Design Incorporated   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DATA ANALYSIS; DATA ANALYSIS SOFTWARE; FUNCTIONAL GENOMICS; GENE SEQUENCE; GENETIC DATABASE; MICROARRAY ANALYSIS; PRIORITY JOURNAL;

EID: 33846681447     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl496     Document Type: Article

References (9)

1. Breitkreutz,B.J. et al. (2003) Osprey: A network visualization system. Genome Biol., 4, r22.21-r22.24.
2. Bridges,D. et al. (2005) Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza saliva genomes. BMC Bioinformatics, 6, 6.
3. Doebley,J. and Lukens,L. (1998) Transcriptional regulators and the evolution of plant form. Plant Cell, 10, 1075-1082.
4. Eisen,M. et al. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
5. Gutierrez,R.A. et al. (2004) Phylogenetic profiling of the Arabidopsis thaliana proteome: What proteins distinguish plants from other organisms? Genome Biol., 5, R53.
6. Shannon,P. et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
7. Shiu,S.H. et al. (2005) Transcription factor families have much higher expansion rates in plants than in animals. Plant Physiol., 139, 18-26.
8. Thimm,O. et al. (2004) MAPMAN: A user-driven tool to display genomics datasets onto diagrams of metabolic pathways and other biological processes. Plant J., 37, 914-939.
9. Venn,J. (1880) On the diagrammatic and mechanical representation of prepositions and reasonings introducing diagrams known today as Venn diagrams. Philosophical Magazine J. Sci., 5, 1-18.