-
1
-
-
2942526369
-
Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and turkey
-
Axelsson, E., Smith, N.G., Sundstrom, H., Berlin, S., and Ellegren, H. 2004. Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and turkey. Mol. Biol. Evol. 21: 1538-1547.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 1538-1547
-
-
Axelsson, E.1
Smith, N.G.2
Sundstrom, H.3
Berlin, S.4
Ellegren, H.5
-
2
-
-
33745129751
-
Conservation and functional significance of gene topology in the genome of Caenorhabditis elegans
-
Chen, N. and Stein, L.D. 2006. Conservation and functional significance of gene topology in the genome of Caenorhabditis elegans. Genome Res. 16: 606-617.
-
(2006)
Genome Res
, vol.16
, pp. 606-617
-
-
Chen, N.1
Stein, L.D.2
-
3
-
-
21044431735
-
Transriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng, J., Kapranov, P., Drenkow, J., Dike, S., Brubaker, S., Patel, S., Long, J., Stern, D., Tammana, H., Helt, G., et al. 2005. Transriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308: 1149-1154.
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
Dike, S.4
Brubaker, S.5
Patel, S.6
Long, J.7
Stern, D.8
Tammana, H.9
Helt, G.10
-
4
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
The Chimpanzee Sequencing and Analysis Consortium
-
The Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
5
-
-
7444260846
-
The ENCODE (ENCyclopedia Of DNA Elements) Project
-
The ENCODE Project Consortium
-
The ENCODE Project Consortium. 2004. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306: 636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
-
6
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
Giardine, B., Riemer, C., Hardison, R.C., Burhans, R., Elnitski, L., Shah, P., Zhang, Y., Blankenberg, D., Albert, I., Miller, W., et al. 2005. Galaxy: A platform for interactive large-scale genome analysis. Genome Res. 15: 1451-1455.
-
(2005)
Genome Res
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Miller, W.10
-
7
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Gibbs, R.A., Weinstock, G.M., Metzker, M.L., Muzny, D.M., Sodergren, E.J., Scherer, S., Scott, G., Steffen, D., Worley, K.C., Burch, P.E., et al. 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428: 493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Muzny, D.M.4
Sodergren, E.J.5
Scherer, S.6
Scott, G.7
Steffen, D.8
Worley, K.C.9
Burch, P.E.10
-
8
-
-
18544404720
-
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
-
Hardison, R.C., Roskin, K.M., Yang, S., Diekhans, M., Kent, W.J., Weber, R., Elnitski, L., Li, J., O'Connor, M., Kolbe, D., et al. 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res. 13: 13-26.
-
(2003)
Genome Res
, vol.13
, pp. 13-26
-
-
Hardison, R.C.1
Roskin, K.M.2
Yang, S.3
Diekhans, M.4
Kent, W.J.5
Weber, R.6
Elnitski, L.7
Li, J.8
O'Connor, M.9
Kolbe, D.10
-
9
-
-
12144287461
-
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
-
Kampa, D., Cheng, J., Kapranov, P., Yamanaka, M., Brubaker, S., Cawley, S., Drenkow, J., Piccolboni, A., Bekiranov, S., Helt, G., et al. 2004. Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res. 14: 331-342.
-
(2004)
Genome Res
, vol.14
, pp. 331-342
-
-
Kampa, D.1
Cheng, J.2
Kapranov, P.3
Yamanaka, M.4
Brubaker, S.5
Cawley, S.6
Drenkow, J.7
Piccolboni, A.8
Bekiranov, S.9
Helt, G.10
-
10
-
-
23744493161
-
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences
-
King, D.C., Taylor, J., Elnitski, L., Chiaromonte, F., Miller, W., and Hardison, R.C. 2005. Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences. Genome Res. 15: 1051-1060.
-
(2005)
Genome Res
, vol.15
, pp. 1051-1060
-
-
King, D.C.1
Taylor, J.2
Elnitski, L.3
Chiaromonte, F.4
Miller, W.5
Hardison, R.C.6
-
11
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh, K., Wade, C.M., Mikkelsen, T.S., Karlsson, E.K., Jaffe, D.B., Kamal, M., Clamp, M., Chang, J.L., Kulbokas III, E.J., Zody, M.C., et al. 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438: 803-819.
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
Karlsson, E.K.4
Jaffe, D.B.5
Kamal, M.6
Clamp, M.7
Chang, J.L.8
Kulbokas III, E.J.9
Zody, M.C.10
-
12
-
-
15844406550
-
HyPhy: Hypothesis testing using phylogenies
-
Pond, S.L., Frost, S.D., and Muse, S.V. 2005. HyPhy: Hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
13
-
-
0025267792
-
The general stochastic model of nucleotide substitution
-
Rodriguez, F., Oliver, J.L., Marin, A., and Medina, J.R. 1990. The general stochastic model of nucleotide substitution. J. Theor. Biol. 142: 485-501.
-
(1990)
J. Theor. Biol
, vol.142
, pp. 485-501
-
-
Rodriguez, F.1
Oliver, J.L.2
Marin, A.3
Medina, J.R.4
-
14
-
-
1542537849
-
Combining phylogenetic and hidden Markov models in biosequence analysis
-
Siepel, A. and Haussler, D. 2004. Combining phylogenetic and hidden Markov models in biosequence analysis. J. Comput. Biol. 11: 413-428.
-
(2004)
J. Comput. Biol
, vol.11
, pp. 413-428
-
-
Siepel, A.1
Haussler, D.2
-
15
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A.S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S., et al. 2005. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15: 1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
16
-
-
0028267146
-
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
-
Yang, Z., Goldman, N., and Friday, A. 1994. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Mol. Biol. Evol. 11: 316-324.
-
(1994)
Mol. Biol. Evol
, vol.11
, pp. 316-324
-
-
Yang, Z.1
Goldman, N.2
Friday, A.3
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