-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
D.P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2004 281 379
-
(2004)
Cell
, vol.116
, pp. 281-379
-
-
Bartel, D.P.1
-
2
-
-
0347357618
-
A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans
-
R.J. Johnston, and O. Hobert A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans Nature 426 2003 845 849
-
(2003)
Nature
, vol.426
, pp. 845-849
-
-
Johnston, R.J.1
Hobert, O.2
-
3
-
-
0037423845
-
Vertebrate microRNA genes
-
L.P. Lim, M.E. Glasner, S. Yekta, C.B. Burge, and D.P. Bartel Vertebrate microRNA genes Science 299 2003 1540
-
(2003)
Science
, vol.299
, pp. 1540
-
-
Lim, L.P.1
Glasner, M.E.2
Yekta, S.3
Burge, C.B.4
Bartel, D.P.5
-
4
-
-
9144270691
-
A pancreatic islet-specific microRNA regulates insulin secretion
-
M.N. Poy A pancreatic islet-specific microRNA regulates insulin secretion Nature 432 2004 226 230
-
(2004)
Nature
, vol.432
, pp. 226-230
-
-
Poy, M.N.1
-
5
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
R.C. Lee, R.L. Feinbaum, and V. Ambros The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 Cell 75 1993 843 854
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
6
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
B.J. Reinhart, F.J. Slack, M. Basson, A.E. Pasquinelli, J.C. Bettinger, A.E. Rougvie, H.R. Horvitz, and G. Ruvkun The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans Nature 403 2000 901 906
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
Rougvie, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
7
-
-
0037418839
-
Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
-
J. Brennecke, D.R. Hipfner, A. Stark, R.B. Russell, and S.M. Cohen Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila Cell 113 2003 25 36
-
(2003)
Cell
, vol.113
, pp. 25-36
-
-
Brennecke, J.1
Hipfner, D.R.2
Stark, A.3
Russell, R.B.4
Cohen, S.M.5
-
8
-
-
0037694970
-
The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism
-
P. Xu, S.Y. Vernooy, M. Guo, and B.A. Hay The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism Curr. Biol. 13 2003 790 795
-
(2003)
Curr. Biol.
, vol.13
, pp. 790-795
-
-
Xu, P.1
Vernooy, S.Y.2
Guo, M.3
Hay, B.A.4
-
9
-
-
0346727524
-
MicroRNAs modulate hematopoietic lineage differentiation
-
C.Z. Chen, L. Li, H.F. Lodish, and D.P. Bartel MicroRNAs modulate hematopoietic lineage differentiation Science 303 2004 83 86
-
(2004)
Science
, vol.303
, pp. 83-86
-
-
Chen, C.Z.1
Li, L.2
Lodish, H.F.3
Bartel, D.P.4
-
10
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
N.C. Lau, L.P. Lim, E.G. Weinstein, and D.P. Bartel An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans Science 294 2001 858 862
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
11
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
R.C. Lee, and V. Ambros An extensive class of small RNAs in Caenorhabditis elegans Science 294 2001 862 864
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
12
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
M. Lagos-Quintana, R. Rauhut, W. Lendeckel, and T. Tuschl Identification of novel genes coding for small expressed RNAs Science 294 2001 853 858
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
13
-
-
0037197803
-
Identification of tissue-specific MicroRNAs from mouse
-
M. Lagos-Quintana, R. Rauhut, A. Yalcin, J. Meyer, W. Lendeckel, and T. Tuschl Identification of tissue-specific MicroRNAs from mouse Curr. Biol. 12 2002 735 739
-
(2002)
Curr. Biol.
, vol.12
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
Tuschl, T.6
-
14
-
-
0037321349
-
New microRNAs from mouse and human
-
M. Lagos-Quintana, R. Rauhut, J. Meyer, A. Borkhardt, and T. Tuschl New microRNAs from mouse and human RNA 9 2003 175 179
-
(2003)
RNA
, vol.9
, pp. 175-179
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Meyer, J.3
Borkhardt, A.4
Tuschl, T.5
-
15
-
-
0037370020
-
A uniform system for microRNA annotation
-
V. Ambros A uniform system for microRNA annotation RNA 9 2003 277 279
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
-
17
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
D.H. Mathews, J. Sabina, M. Zuker, and D.H. Turner Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure J. Mol. Biol. 288 1999 911 940
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
18
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
L.P. Lim, N.C. Lau, E.G. Weinstein, A. Abdelhakim, S. Yekta, M.W. Rhoades, C.B. Burge, and D.P. Bartel The microRNAs of Caenorhabditis elegans Genes Dev 17 2003 991 1008
-
(2003)
Genes Dev
, vol.17
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
19
-
-
0043123153
-
Vienna RNA secondary structure server
-
I.L. Hofacker Vienna RNA secondary structure server Nucleic Acids Res. 31 2003 3429 3431
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
20
-
-
0038054470
-
Computational and experimental identification of C. elegans microRNAs
-
Y. Grad, J. Aach, G.D. Hayes, B.J. Reinhart, G.M. Church, G. Ruvkun, and J. Kim Computational and experimental identification of C. elegans microRNAs Mol. Cell 11 2003 1253 1263
-
(2003)
Mol. Cell
, vol.11
, pp. 1253-1263
-
-
Grad, Y.1
Aach, J.2
Hayes, G.D.3
Reinhart, B.J.4
Church, G.M.5
Ruvkun, G.6
Kim, J.7
-
21
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
E. Berezikov, V. Guryev, B.J. van de, E. Wienholds, R.H. Plasterk, and E. Cuppen Phylogenetic shadowing and computational identification of human microRNA genes Cell 120 2005 21 24
-
(2005)
Cell
, vol.120
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
Van De, B.J.3
Wienholds, E.4
Plasterk, R.H.5
Cuppen, E.6
-
22
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
-
D. Boffelli, J. McAuliffe, D. Ovcharenko, K.D. Lewis, I. Ovcharenko, L. Pachter, and E.M. Rubin Phylogenetic shadowing of primate sequences to find functional regions of the human genome Science 299 2003 1391 1394
-
(2003)
Science
, vol.299
, pp. 1391-1394
-
-
Boffelli, D.1
McAuliffe, J.2
Ovcharenko, D.3
Lewis, K.D.4
Ovcharenko, I.5
Pachter, L.6
Rubin, E.M.7
-
23
-
-
22844440427
-
Identification of hundreds of conserved and nonconserved human microRNAs
-
I. Bentwich Identification of hundreds of conserved and nonconserved human microRNAs Nat. Genet. 37 2005 766 770
-
(2005)
Nat. Genet.
, vol.37
, pp. 766-770
-
-
Bentwich, I.1
-
24
-
-
19944412146
-
MicroRNA expression detected by oligonucleotide microarrays: System establishment and expression profiling in human tissues
-
O. Barad MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues Genome Res. 14 2004 2486 2494
-
(2004)
Genome Res.
, vol.14
, pp. 2486-2494
-
-
Barad, O.1
-
25
-
-
1942494040
-
Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation
-
L.F. Sempere, S. Freemantle, I. Pitha-Rowe, E. Moss, E. Dmitrovsky, and V. Ambros Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation Genome Biol. 5 2004 R13
-
(2004)
Genome Biol.
, vol.5
, pp. 13
-
-
Sempere, L.F.1
Freemantle, S.2
Pitha-Rowe, I.3
Moss, E.4
Dmitrovsky, E.5
Ambros, V.6
-
26
-
-
0037009364
-
MicroRNA maturation: Stepwise processing and subcellular localization
-
Y. Lee, K. Jeon, J.T. Lee, S. Kim, and V.N. Kim MicroRNA maturation: stepwise processing and subcellular localization EMBO J. 21 2002 4663 4670
-
(2002)
EMBO J.
, vol.21
, pp. 4663-4670
-
-
Lee, Y.1
Jeon, K.2
Lee, J.T.3
Kim, S.4
Kim, V.N.5
-
28
-
-
0141631876
-
A microRNA array reveals extensive regulation of microRNAs during brain development
-
A.M. Krichevsky, K.S. King, C.P. Donahue, K. Khrapko, and K.S. Kosik A microRNA array reveals extensive regulation of microRNAs during brain development RNA 9 2003 1274 1281
-
(2003)
RNA
, vol.9
, pp. 1274-1281
-
-
Krichevsky, A.M.1
King, K.S.2
Donahue, C.P.3
Khrapko, K.4
Kosik, K.S.5
-
29
-
-
13944260434
-
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
-
S. Baskerville, and D.P. Bartel Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes RNA 11 2005 241 247
-
(2005)
RNA
, vol.11
, pp. 241-247
-
-
Baskerville, S.1
Bartel, D.P.2
-
30
-
-
3042752769
-
An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues
-
C.G. Liu An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues PNAS 101 2004 9740 9744
-
(2004)
PNAS
, vol.101
, pp. 9740-9744
-
-
Liu, C.G.1
-
31
-
-
5344273958
-
Microarray analysis of microRNA expression in the developing mammalian brain
-
E.A. Miska, E. Alvarez-Saavedra, M. Townsend, A. Yoshii, N. Sestan, P. Rakic, M. Constantine-Paton, and H.R. Horvitz Microarray analysis of microRNA expression in the developing mammalian brain Genome Biol. 5 2004 R68
-
(2004)
Genome Biol.
, vol.5
, pp. 68
-
-
Miska, E.A.1
Alvarez-Saavedra, E.2
Townsend, M.3
Yoshii, A.4
Sestan, N.5
Rakic, P.6
Constantine-Paton, M.7
Horvitz, H.R.8
-
32
-
-
13944262052
-
A custom microarray platform for analysis of microRNA gene expression
-
J.M. Thomson, J. Parker, C.M. Perou, and S.M. Hammond A custom microarray platform for analysis of microRNA gene expression Nature Meth. 1 2004 47 53
-
(2004)
Nature Meth.
, vol.1
, pp. 47-53
-
-
Thomson, J.M.1
Parker, J.2
Perou, C.M.3
Hammond, S.M.4
-
33
-
-
13944283031
-
Microarray-based, high-throughput gene expression profiling of microRNAs
-
P.T. Nelson, D.A. Baldwin, L.M. Scearce, J.C. Oberholtzer, J.W. Tobias, and Z. Mourelatos Microarray-based, high-throughput gene expression profiling of microRNAs Nature Meth. 1 2004 155 161
-
(2004)
Nature Meth.
, vol.1
, pp. 155-161
-
-
Nelson, P.T.1
Baldwin, D.A.2
Scearce, L.M.3
Oberholtzer, J.C.4
Tobias, J.W.5
Mourelatos, Z.6
-
34
-
-
7044285911
-
Probing microRNAs with microarrays: Tissue specificity and functional inference
-
T. Babak, W. Zhang, Q. Morris, B.J. Blencowe, and T.R. Hughes Probing microRNAs with microarrays: tissue specificity and functional inference RNA 10 2004 1813 1819
-
(2004)
RNA
, vol.10
, pp. 1813-1819
-
-
Babak, T.1
Zhang, W.2
Morris, Q.3
Blencowe, B.J.4
Hughes, T.R.5
-
35
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
L.P. Lim Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs Nature 433 7027 2005 769 773
-
(2005)
Nature
, vol.433
, Issue.7027
, pp. 769-773
-
-
Lim, L.P.1
-
36
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
J. Lu MicroRNA expression profiles classify human cancers Nature 435 2005 834 838
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
-
37
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
B.P. Lewis, I.H. Shih, M.W. Jones-Rhoades, D.P. Bartel, and C.B. Burge Prediction of mammalian microRNA targets Cell 115 2003 787 798
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
40
-
-
2442672918
-
A combined computational experimental approach predicts human microRNA targets
-
M. Kiriakidou, P.T. Nelson, A. Kouranov, P. Fitziev, C. Bouyioukos, Z. Mourelatos, and A. Hatzigeorgiou A combined computational experimental approach predicts human microRNA targets Genes Dev. 18 2004 1165 1178
-
(2004)
Genes Dev.
, vol.18
, pp. 1165-1178
-
-
Kiriakidou, M.1
Nelson, P.T.2
Kouranov, A.3
Fitziev, P.4
Bouyioukos, C.5
Mourelatos, Z.6
Hatzigeorgiou, A.7
-
41
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
J.G. Doench, and P.A. Sharp Specificity of microRNA target selection in translational repression Genes Dev. 18 2004 504 511
-
(2004)
Genes Dev.
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
42
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets
-
B.P. Lewis, C.B. Burge, and D.P. Bartel Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets Cell 120 2005 15 20
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
43
-
-
10644253787
-
Architecture of a validated microRNA:target interaction
-
M.C. Vella, K. Reinert, and F.J. Slack Architecture of a validated microRNA:target interaction Chem. Biol. 11 2004 1619 1623
-
(2004)
Chem. Biol.
, vol.11
, pp. 1619-1623
-
-
Vella, M.C.1
Reinert, K.2
Slack, F.J.3
-
44
-
-
15244354492
-
Incorporating structure to predict microRNA targets
-
H. Robins, Y. Li, and R.W. Padgett Incorporating structure to predict microRNA targets PNAS 102 2005 4006 4009
-
(2005)
PNAS
, vol.102
, pp. 4006-4009
-
-
Robins, H.1
Li, Y.2
Padgett, R.W.3
-
45
-
-
22444437609
-
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
-
Y. Zhao, E. Samal, and D. Srivastava Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis Nature 436 2005 214 220
-
(2005)
Nature
, vol.436
, pp. 214-220
-
-
Zhao, Y.1
Samal, E.2
Srivastava, D.3
-
47
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
M. Rehmsmeier, P. Steffen, M. Hochsmann, and R. Giegerich Fast and effective prediction of microRNA/target duplexes RNA 10 2004 1507 1517
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
48
-
-
0842321501
-
MicroRNA targets in Drosophila
-
A.J. Enright, B. John, U. Gaul, T. Tuschl, C. Sander, and D.S. Marks MicroRNA targets in Drosophila Genome Biol 5 2003 R1
-
(2003)
Genome Biol
, vol.5
, pp. 1
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
49
-
-
14044251458
-
Human MicroRNA targets
-
B. John, A.J. Enright, A. Aravin, T. Tuschl, C. Sander, and D.S. Marks Human MicroRNA targets PLoS. Biol. 2 2004 e363
-
(2004)
PLoS. Biol.
, vol.2
, pp. 363
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
50
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
X. Xie, J. Lu, E.J. Kulbokas, T.R. Golub, V. Mootha, K. Lindblad-Toh, E.S. Lander, and M. Kellis Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals Nature 434 2005 338 345
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
51
-
-
20944450160
-
Combinatorial microRNA target predictions
-
A. Krek Combinatorial microRNA target predictions Nature Genet. 37 2005 495 500
-
(2005)
Nature Genet.
, vol.37
, pp. 495-500
-
-
Krek, A.1
-
52
-
-
27344456287
-
MicroRNA Target predictions across seven Drosophila species and comparison to mammalian targets
-
D. Grun, Y. Wang, D. Langenberger, K. Gunsalus, and N. Rajewsky microRNA Target predictions across seven Drosophila species and comparison to mammalian targets PLoS. Comput. Biol. 1 2005 e13
-
(2005)
PLoS. Comput. Biol.
, vol.1
, pp. 13
-
-
Grun, D.1
Wang, Y.2
Langenberger, D.3
Gunsalus, K.4
Rajewsky, N.5
-
53
-
-
20444479428
-
C-Myc-regulated microRNAs modulate E2F1 expression
-
K.A. O'Donnell, E.A. Wentzel, K.I. Zeller, C.V. Dang, and J.T. Mendell c-Myc-regulated microRNAs modulate E2F1 expression Nature 435 2005 839 843
-
(2005)
Nature
, vol.435
, pp. 839-843
-
-
O'Donnell, K.A.1
Wentzel, E.A.2
Zeller, K.I.3
Dang, C.V.4
Mendell, J.T.5
-
54
-
-
20044395613
-
RAS Is Regulated by the let-7 MicroRNA Family
-
S.M. Johnson RAS Is Regulated by the let-7 MicroRNA Family Cell 120 2005 635 647
-
(2005)
Cell
, vol.120
, pp. 635-647
-
-
Johnson, S.M.1
-
55
-
-
20444468132
-
A postulated role for microRNA in cellular differentiation
-
I. Bentwich A postulated role for microRNA in cellular differentiation FASEB J. 19 2005 875 879
-
(2005)
FASEB J.
, vol.19
, pp. 875-879
-
-
Bentwich, I.1
|