Modeling a whole organ using proteomics: The avian bursa of Fabricius

Proteomics

Volumn 6, Issue 9, 2006, Pages 2759-2771

  McCarthy, Fiona M ^a   Cooksey, Amanda M ^a   Wang, Nan ^b   Bridges, Susan M ^b   Pharr, G Todd ^a   Burgess, Shane C ^a  

^a MISSISSIPPI STATE UNIVERSITY   (United States)

^b MISSISSIPPI STATE UNIVERSITY   (United States)

Author keywords

B Cell development; Functional proteomics; Phylogenetics; Transcription factors

Indexed keywords

DEATH RECEPTOR;

AMINO ACID SEQUENCE; ANIMAL CELL; APOPTOSIS; ARTICLE; B LYMPHOCYTE ACTIVATION; BURSA FABRICII; CELL DIFFERENTIATION; CELL FUNCTION; CELL PROLIFERATION; CELL TYPE; CHICKEN; CONTROLLED STUDY; INTRACELLULAR SPACE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN LOCALIZATION; PROTEOMICS; STROMA CELL; TRANSCRIPTION INITIATION;

AMINO ACID SEQUENCE; ANIMALS; BURSA OF FABRICIUS; CELLS, CULTURED; CHICKENS; DATABASES, GENETIC; HUMANS; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEOMICS; SEQUENCE ALIGNMENT;

ANIMALIA; AVES;

EID: 33646742564     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200500648     Document Type: Article

References (68)

1. Glick, B., Chang, T. S., Jaap, R. G., Poultry Sci. 1956, 35, 224-225.
2. Davison, T. F., Br. Poult. Sci. 2003, 44, 6-21.
3. Neiman, P. E., Ruddell, A., Jasoni, C., Loring, G. et al., Proc. Natl. Acad. Sci. USA 2001, 98, 6378-6383.
4. Nagy, N., Magyar, A., Toth, M., Olah, I., Anat. Embryol. (Berl.) 2004, 208, 97-107.
5. Boyd, R. L., Ward, H. A., Muller, H. K., J. Reticuloendothel. Soc. 1983, 34, 383-393.
6. McCarthy, F. M., Burgess, S. C., van den Berg, B. H., Koter, M. D., Pharr, G. T., J. Proteome Res. 2005, 4, 316-324.
7. Hillier, L. W., Miller, W., Birney, E., Warren, W. et al., Nature 2004, 432, 695-716.
8. Curwen, V., Eyras, E., Andrews, T. D., Clarke, L. et al., Genome Res. 2004, 14, 942-950.
9. Hill, D. P., Davis, A. P., Richardson, J. E., Corradi, J. P. et al., Genomics 2001, 74, 121-128.
10. Funk, P. E., Thompson, C. B., Cell. Immunol. 1996, 186, 75-81.
11. Birney, E., Andrews, T. D., Bevan, P., Caccamo, M. et al., Genome Res. 2004, 14, 925-928.
12. Washburn, M. P., Wolters, D., Yates, J. R. 3rd., Nat. Biotechnol. 2001, 19, 242-247.
13. Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., Proteomics 2005, 5, 3537-3545.
14. Nanduri, B., Lawrence, M. L., Vanguri, S., Burgess, S. C., Proteomics 2005, 5, 4852-4863.
15. Camon, E., Barrell, D., Lee, V., Dimmer, E., Apweiler, R., In Silico Biol. 2004, 4, 5-6.
16. Thompson, J. D., Higgins, D. G., Gibson, T. J., Nucleic Acids Res. 1994, 22, 4673-4680.
17. Marchler-Bauer, A., Bryant, S. H., Nucleic Acids Res. 2004, 32 (Web Server issue), W327-331.
18. Hirokawa, T., Boon-Chieng, S., Mitaku, S., Bioinformatics 1998, 14, 378-379.
19. Nakai, K., Horton, P., Trends Biochem. Sci. 1999, 24, 34-36.
20. Kall, L., Krogh, A., Sonnhammer, E. L., J. Mol. Biol. 2004, 338, 1027-1036.
21. Dahlquist, K. D., Salomonis, N., Vranizan, K., Lawlor, S. C., Conklin, B. R., Nat. Genet. 2002, 31, 19-20.
22. Felsenstein, J., Cladistics 1989, 5, 164-166.
23. Kuster, B., Mortensen, P., Andersen, J. S., Mann, M., Proteomics 2001, 1, 641-650.
24. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D. J., J. Mol. Biol. 1990, 215, 403-410.
25. Kim, J. Y., Lee, J. H., Park, G. W., Cho, K., Kwon, K. H. et al., Proteomics 2005, 5, 3376-3385.
26. Larsen, C. P., Ritchie, S. C., Pearson, T. C., Linsley, P. S., Lowry, R. P., J. Exp. Med. 1992, 176, 1215-1220.
27. Young, J. W., Koulova, L., Soergel, S. A., Clark, E. A. et al., J. Clin. Invest. 1992, 90, 229-237.
28. Geijtenbeek, T. B., Torensma, R., van Vliet, S. J., van Duijnhoven, G. C. et al., Cell 2000, 100, 575-585.
29. Teodorczk, J. A., Potworowski, E. F., Immunology 1975, 28, 711-717.
30. Gerondakis, S., Bishop, J. M., Mol. Cell. Biol. 1986, 6, 3677-3684.
31. Senawong, T., Peterson, V. J., Leid, M., Arch. Biochem. Biophys. 2005, 434, 316-325.
32. Chamboredon, S., Briggs, J., Vial, E., Hurault, J. et al., Oncogene 2003, 22, 4047-4061.
33. Morimura, T., Goitsuka, R., Zhang, Y., Saito, I. et al., J. Biol. Chem. 2000, 275, 36523-36531.
34. Liippo, J., Mansikka, A., Lassila, O., Eur. J. Immunol. 1999, 29, 2651-2657.
35. Kherrouche, Z., Beuscart, A., Huguet, C., Flourens, A. et al., Oncogene 1998, 16, 1357-1367.
36. Ikeda, T., Hirota, Y., Onodera, T., Gene 1994, 138, 193-196.
37. Blauer, M. K., Tuohimaa, P. J., Vilja, P. J., J Endocrinol. 1991, 129, 189-196.
38. Koskela, K., Lassila, O., Scand. J. Immunol. 2003, 57, 56-61.
39. Kikuchi, H., Takami, Y., Nakayama, T., Gene 2005, 347, 83-97.
40. Conlon, T. M., Meyer, K. B., BMC Immunol. 2004, 5, 11.
41. Matsushima, Y., Matsumura, K., Ishii, S., Inagaki, H. et al., J. Biol. Chem. 2003, 278, 31149-31158.
42. Caldwell, R. B., Kierzek, A. M., Arakawa, H., Bezzubov, Y. et al., Genome Biol. 2005, 6, R6.
43. Kamakaka, R. T., Biggins, S., Genes Dev. 2005, 19, 295-310.
44. Garcia, B. A., Busby, S. A., Barber, C. M., Shabanowitz, J. et al., J. Proteome Res. 2004, 3, 1219-1227.
45. Eguchi, Y., Ewert, D. L., Tsujimoto, Y., Nucleic Acids Res. 1992, 20, 4187-4192.
46. Porter, A. G., Trends Cell Biol. 1999, 9, 394-401.
47. Otera, H., Ohsakaya, S., Nagaura, Z. I., Ishihara, N., Mihara, K., EMBO J. 2005, 24, 1375-1386.
48. Verhagen, A. M., Ekert, P. G., Pakusch, M., Silke, J. et al., Cell 2000, 102, 43-53.
49. Pei, X. Y., Dai, Y., Grant, S., Leukemia 2003, 17, 2036-2045.
50. Lottaz, C., Iseli, C., Jongeneel, C. V., Bucher, P., Bioinformatics 2003, 19 Suppl 2, II103-II112.
51. Nadershahi, A., Fahrenkrug, S. C., Ellis, L. B., BMC Bioinformatics 2004, 5, 14.
52. Ricci, A., Bronzetti, E., Felici, L., Ciriaco, E. et al., J. Neuroimmunol. 1996, 66, 23-28.
53. Brink, P. R., Walcott, B., Roemer, E., Grine, E. et al., J. Neuroimmunol. 1994, 51, 113-121.
54. Kansas, G. S., Blood 1996, 88, 3259-3287.
55. Masteller, E. L., Lee, K. P., Carlson, L. M., Thompson, C. B., J. Immunol. 1995, 155, 5550-5556.
56. Abbaszade, I., Liu, R. Q., Yang, F., Rosenfeld, S. A. et al., J. Biol. Chem. 1999, 274, 23443-23450.
57. Paramithiotis, E., Ratcliffe, M. J., Eur. J. Immunol. 1994, 24, 458-463.
58. Link, A. J., Eng, J., Schieltz, D. M., Carmack, E. et al., Nat. Biotechnol. 1999, 17, 676-682.
59. Fuentes-Panana, E. M., Bannish, G., Monroe, J. G., Immunol. Rev. 2004, 197, 26-40.
60. Cortes, A., Fonfria, J., Vicente, A., Varas, A. et al., Anat. Rec. 1995, 242, 91-95.
61. Pink, J. R. L., Droege, W., Hala, K., Miggiano, V. C., Ziegler, A., Immunogenetics 1977, 9, 203-216.
62. Salomonsen, J., Dunon, D., Skjodt, K., Thorpe, D. et al., Proc. Natl. Acad. Sci. USA 1991, 88, 1359-1363.
63. Marsters, S. A., Sheridan, J. P., Pitti, R. M., Huang, A. et al., Curr. Biol. 1997, 7, 1003-1006.
64. Funk, P. E., Pifer, J., Kharas, M., Crisafi, G., Johnson, A., Cell. Immunol. 2003, 226, 95-104.
65. Kaiser, P., Poh, T. Y., Rothwell, L., Avery, S. et al., J. Interferon Cytokine Res. 2005, 25, 467-484.
66. Thomas, J. W., Touchman, J. W., Blakesley, R. W., Bouffard, G. G. et al., Nature 2003, 424, 788-793.
67. Sun, M., Hurst, L. D., Carmichael, G. G., Chen, J., Nucleic Acids Res. 2005, 33, 5533-5543.
68. Storz, G., Altuvia, S., Wassarman, K. M., Annu. Rev. Biochem. 2005, 74, 199-217.