Towards construction of viral vectors based on avian coronavirus infectious bronchitis virus for gene delivery and vaccine development

Journal of Virological Methods

Volumn 160, Issue 1-2, 2009, Pages 48-56

  Shen, Hongyuan ^a   Fang, Shou Guo ^a   Chen, Bo ^b   Chen, Guang ^c   Tay, Felicia P L ^a   Liu, Ding Xiang ^a,b,c  

^a INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Singapore)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^c NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Avian coronavirus infectious bronchitis virus; Coronavirus; Gene delivery; Reverse genetics; Viral vector

Indexed keywords

VIRUS VECTOR;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; AVIAN INFECTIOUS BRONCHITIS VIRUS; CHICKEN; CONTROLLED STUDY; EMBRYO; GENE CONSTRUCT; GENE DELETION; GENE EXPRESSION; GENE INSERTION; HUMAN; HUMAN CELL; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; VACCINE PRODUCTION; VIRAL GENE DELIVERY SYSTEM; VIRUS GENOME;

ANIMALS; CHICK EMBRYO; CHICKENS; DENGUE VIRUS; GENE THERAPY; GENES, REPORTER; GENETIC VECTORS; GENOMIC INSTABILITY; GREEN FLUORESCENT PROTEINS; INFECTIOUS BRONCHITIS VIRUS; LUCIFERASES, FIREFLY; SARS VIRUS; SEQUENCE DELETION; VIRAL PROTEINS; VIRAL VACCINES;

AVES; AVIAN INFECTIOUS BRONCHITIS VIRUS; CORONAVIRUS; DENGUE VIRUS;

EID: 67649295303     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2009.04.023     Document Type: Article

References (55)

1. Almazán F., González J.M., Pénzes Z., Izeta A., Calvo E., Plana-Durán J., and Enjuanes L. Engineering the largest RNA virus genome as an infectious bacterial artificial chromosome. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 5516-5521
2. Alonso S., Sola I., Teifke J.P., Reimann I., Izeta A., Balasch M., Plana-Durán J., Moormann R.J., and Enjuanes L. In vitro and in vivo expression of foreign genes by transmissible gastroenteritis coronavirus-derived minigenomes. J. Gen. Virol. 83 (2002) 567-579
3. Boursnell M.E.G., Brown T.D.K., Foulds I.J., Green P.F., Tomley F.M., and Binns M.M. Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus. J. Gen. Virol. 68 (1987) 57-77
4. Casais R., Davies M., Cavanagh D., and Britton P. Gene 5 of the avian coronavirus infectious bronchitis virus is not essential for replication. J. Virol. 79 (2005) 8065-8078
5. Casais R., Dove B., Cavanagh D., and Britton P. Recombinant avian infectious bronchitis virus expressing a heterologous spike gene demonstrates that the spike protein is a determinant of cell tropism. J. Virol. 77 (2003) 9084-9089
6. Casais R., Thiel V., Siddell S.G., Cavanagh D., and Britton P. Reverse genetics system for the avian coronavirus infectious bronchitis virus. J. Virol. 75 (2001) 12359-12369
7. Curtis K.M., Yount B., and Baric R.S. Heterologous gene expression from transmissible gastroenteritis virus replicon particles. J. Virol. 76 (2002) 1422-1434
8. de Haan C.A., Genne L.V., Stoop J.N., Volders H., and Rottier P.J. Coronavirus as vectors: position dependence of foreign gene expression. J. Virol. 77 (2003) 11312-11323
9. de Haan C.A., Haijema B.J., Boss D., Heuts F.W., and Rottier P.J. Coronaviruses as vectors: stability of foreign gene expression. J. Virol. 79 (2005) 12742-12751
10. Enjuanes L., Sol I., Almazan F., Ortego J., Izeta A., Gonzalez J.M., Alonso S., Sanchez J.M., Escors D., Calvo E., Riquelme C., and Sanchez C. Coronavirus derived expression systems. J. Biotechnol. 88 (2001) 183-204
11. Enjuanes L., Sol I., Alonso S., Escors D., and Zuniga S. Coronavirus reverse genetics and development of vectors for gene expression. Curr. Top. Microbiol. Immunol. 287 (2005) 161-197
12. Eriksson K.K., Makia D., Maier R., Ludewig B., and Thiel V. Towards a coronavirus-based HIV multigene vaccine. Clin. Dev. Immunol. 13 (2006) 353-360
13. Fang S.G., Chen B., Tay F.P.L., and Liu D.X. An arginine-to-proline mutation in a domain with undefined function within the RNA helicase protein (NSP13) is lethal to the coronavirus infectious bronchitis virus in cultured cells. Virology 358 (2007) 136-147
14. Fischer F., Stegen C.F., Koetzner C.A., and Masters P.S. Construction of a mouse hepatitis virus recombinant expressing a foreign gene. Adv. Exp. Med. Biol. 440 (1998) 291-295
15. Hackney K., Cavanagh D., Kaiser P., and Britton P. In vitro and in ovo expression of chicken gamma interferon by a defective RNA of avian coronavirus infectious bronchitis virus. J. Virol. 77 (2003) 5694-5702
16. Haijema B.J., Volders H., and Rottier P.J. Switching species tropism: an effective way to manipulate the feline coronavirus genome. J. Virol. 77 (2003) 4528-4538
17. Haijiema B.J., Volders H., and Rottier P.J. Live, attenuated coronavirus vaccines through the directed deletion of group-specific genes provide protection against feline infectious peritonitis. J. Virol. 78 (2004) 3863-3871
18. Hodgeson T., Britton P., and Cavanagh D. Neither the RNA nor the proteins of open reading frames 3a and 3b of the coronavirus infectious bronchitis virus are essential for replication. J. Virol. 80 (2006) 296-305
19. Hsue B., and Masters P.S. Insertion of a new transcriptional unit into the genome of mouse hepatitis virus. J. Virol. 73 (1997) 6128-6135
20. Izeta A., Smerdou C., Alonso S., Penzes Z., Mendez A., Plana-Duran J., and Enjuanes L. Replication and packaging of transmissible gastroenteritis coronavirus-derived synthetic minigenomes. J. Virol. 73 (1997) 1535-1545
21. Kuo L., Godeke G.J., Raamsman M.J., Masters P.S., and Rottier P.J. Retargeting of coronavirus by substitution of the spike glycoprotein ectodomain: crossing the host dee species barrier. J. Virol. 74 (2000) 1393-1406
22. Lai M.M.C. Recombination in large RNA viruses: coronaviruses. Semin. Virol. 7 (1996) 381-388
23. Le T.M., Wong H.H., Tay F.P., Fang S., and Liu D.X. Expression, post-translational modification and biochemical characterization of proteins encoded by subgenomic mRNA8 of the severe acute respiratory syndrome coronavirus. FEBS J. 274 (2007) 4211-4222
24. Lee S.G., Kim D.Y., Hyun B.H., and Bae Y.S. Novel design architecture for genetic stability of recombinant poliovirus: the manipulation of G/C contents and their distribution patterns increases the genetic stability of inserts in a poliovirus-based RPS-Vax vector system. J. Virol. 76 (2002) 1649-1662
25. Lim K.P., and Liu D.X. Characterization of the two overlapping papain-like proteinase domains encoded in gene 1 of the coronavirus infectious bronchitis virus and determination of the C-terminal cleavage site of an 87 kDa protein. Virology 245 (1998) 303-312
26. Lim K.P., and Liu D.X. Characterisation of a papain-like proteinase domain encoded by ORF1a of the coronavirus IBV and determination of the C-terminal cleavage site of an 87 kDa protein. Adv. Exp. Med. Biol. 440 (1998) 173-184
27. Lim K.P., Ng L.F.P., and Liu D.X. Identification of a novel cleavage activity of the first papain-like proteinase domain encoded by ORF 1a of the coronavirus avian infectious bronchitis virus and characterization of the cleavage products. J. Virol. 74 (2000) 1674-1685
28. Lin Y.J., and Lai M.M.C. Deletion mapping of a mouse hepatitis virus defective interfering RNA reveals the requirement of an internal and discontinuous sequence for replication. J. Virol. 67 (1993) 6110-6118
29. Liu D.X., Cavanagh D., Green P., and Inglis S.C. A polycistronic mRNA specified by the coronavirus infectious bronchitis virus. Virology 184 (1991) 531-544
30. Liu D.X., and Inglis S.C. Identification of two new polypeptides encoded by mRNA5 of the coronavirus infectious bronchitis virus. Virology 186 (1992) 342-347
31. Liu D.X., Shen S., Xu H.Y., and Wang S.F. Proteolytic mapping of the coronavirus infectious bronchitis virus 1b polyprotein: evidence for the presence of four cleavage sites of the 3C-like proteinase and identification of two novel cleavage products. Virology 246 (1998) 288-297
32. Liu D.X., Tibbles K.W., Cavanagh D., Brown T.D.K., and Brierley I. Identification, expression, and processing of an 87-kDa polypeptide encoded by ORF 1a of the coronavirus infectious bronchitis virus. Virology 208 (1995) 48-57
33. Liu D.X., Xu H.Y., and Brown T.D.K. Proteolytic processing of the coronavirus infectious bronchitis virus 1a polyprotein: Identification of a 10 kDa polypeptide and determination of its cleavage sites. J. Virol. 71 (1997) 1814-1820
34. Ng L.F., and Liu D.X. Further characterization of the coronavirus infectious bronchitis virus 3C-like proteinase and determination of a new cleavage site. Virology 272 (2000) 27-39
35. Ng L.F., and Liu D.X. Membrane association and dimerization of a cysteine-rich 16-kilodalton polypeptide released from the C-terminal region of the coronavirus infectious bronchitis virus 1a polyprotein. J. Virol. 76 (2002) 6257-6267
36. Ng L.F.P., and Liu D.X. Identification of a 24 kDa polypeptide processed from the coronavirus infectious bronchitis virus 1a polyprotein by the 3C-like proteinase and determination of its cleavage sites. Virology 243 (1998) 388-395
37. Ortego J., Escors D., Laude H., and Enjuanes L. Generation of a replication-competent, propagation-deficient virus vector based on the transmissible gastroenteritis coronavirus genome. J. Virol. 76 (2002) 11518-11529
38. Ortego J., Sola I., Almazán F., Ceriani J.E., Riquelme C., Balasch M., Plana J., and Enjuanes L. Transmissible gastroenteritis coronavirus gene 7 is not essential but influences in vivo virus replication and virulence. Virology 308 (2003) 13-22
39. Pasternak A.O., Spaan W.J.M., and Snijder E.J. Nidovirus transcription: how to make sense...?. J. Gen. Virol. 87 (2006) 1403-1421
40. Rowe C.L., Fleming J.O., Nathan M.J., Sgro J.Y., Palmenberg A.C., and Baker S.C. Generation of coronavirus spike deletion variants by high-frequency recombination at regions of predicted RNA secondary structure. J. Virol. 71 (1997) 6183-6190
41. Sanchez C.M., Izeta A., Sanchez-Morgado J.M., Alonso S., Sola I., Balasch M., Plana-Duran J., and Enjuanes L. Targeted recombination demonstrates that the spike gene of transmissible gastroenteritis coronavirus is a determinant of its enteric tropism and virulence. J. Virol. 73 (1997) 7607-7618
42. Sarma J.D., Scheen E., Seo S.H., Koval M., and Weiss S.R. Enchanced green fluorescent protein expression may be used to monitor murine coronavirus spread in vitro and in the mouse central nervous system. J. Neorovirol . 8 (2002) 381-391
43. Sawicki S.G., and Sawicki D.L. Coronavirus transcription: a perspective. Curr. Top. Microbiol. Immunol. 287 (2005) 31-55
44. Sims A.C., Baric R.S., Yount B., Burkett S.E., Collins P.L., and Pickles R.J. Severe acute respiratory syndrome coronavirus infection of human ciliated airway epithelia: role of ciliated cells in viral spread in the conducting airways of the lungs. J. Virol. 79 (2005) 15511-15524
45. Sola I., Alonso S., Zúñiga S., Balasch M., Plana-Durán J., and Enjuanes L. Engineering the transmissible gastroenteritis virus genome as an expression vector inducing lactogenic immunity. J. Virol. 77 (2003) 4357-4369
46. Stirrups K., Shaw K., Evans S., Dalton K., Casais R., Cavanagh D., and Britton P. Expression of reporter genes from the defective RNA CD-61 of the coronavirus infectious bronchitis virus. J. Gen. Virol. 8 (2000) 1687-1698
47. Tan Y.W., Fang S.G., Fan H., Lescar J., and Liu D.X. Amino acid residues critical for RNA-binding in the N-terminal domain of the nucleocapsid protein are essential determinants for the replication and infectivity of coronavirus in cultured cells. Nucleic Acids Res. 34 (2006) 4816-4825
48. Thiel V., Karl N., Schelle B., Disterer P., Klagge I., and Siddell S.G. Multigene RNA vector based on coronavirus transcription. J. Virol. 77 (2003) 9790-9798
49. Xu H.Y., Lim K.P., Shen S., and Liu D.X. Further identification and characterization of novel intermediate and mature cleavage products released from the ORF 1b region of the avian coronavirus infectious bronchitis virus 1a/1b polyprotein. Virology 288 (2001) 212-222
50. Youn S., Leibowitz J.L., and Collisson E.W. In vitro assembled, recombinant infectious bronchitis virus demonstrated that the 5a open reading frame is not essential for replication. Virology 332 (2005) 206-215
51. Yount B., Curtis K.M., and Baric R.S. Strategy for systematic assembly of large RNA and DNA genomes: transmissible gastroenteritis virus model. J. Virol. 74 (2000) 10600-10611
52. Yount B., Curtis K.M., Fritz E.A., Hensley L.E., Jahrling P.B., Prentice E., Denison M.R., Geisbert T.W., and Baric R.S. Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus. Proc. Natl. Acad. Sci. U.S.A. 100 (2003) 12995-13000
53. Yount B., Denison M.R., Weiss S.R., and Baric R.S. Systematic assembly of a full-length infectious cDNA of mouse hepatitis virus strain A59. J. Virol. 76 (2002) 11065-11078
54. Yount B., Roberts R.S., Sim A.C., Deming D., Frieman M.B., Sparks J., Denison M.R., Davis N., and Baric R.S. Severe acute respiratory syndrome coronavirus group-specific open reading frames encode nonessential functions for replication in cell cultures and mice. J. Virol. 79 (2005) 14909-14922
55. Zhang X., Hinton D.R., Cua D.J., Stohlman S.A., and Lai M.M. Expression of interferon-gamma by a coronavirus defective-interfering RNA vector and its effect on viral replication, spread, and pathogenicity. Virology 233 (1997) 327-338