Timing major conflict between mitochondrial and nuclear genes in species relationships of Polygonia butterflies (Nymphalidae: Nymphalini)

BMC Evolutionary Biology

Volumn 9, Issue 1, 2009, Pages

  Wahlberg, Niklas ^a   Weingartner, Elisabet ^b   Warren, Andrew D ^c,d   Nylin, Sören ^b  

^a UNIVERSITY OF TURKU   (Finland)

^b STOCKHOLM UNIVERSITY   (Sweden)

^c UNIVERSITY OF FLORIDA   (United States)

^d UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS DNA; MITOCHONDRIAL DNA;

ARTICLE; BUTTERFLY; DNA SEQUENCE; EVOLUTION; MITOCHONDRIAL GENE; NONHUMAN; PHYLOGENY; POLYGONIA; SPECIES DIFFERENCE; ANIMAL; BAYES THEOREM; CELL NUCLEUS; CLASSIFICATION; GENETICS; GENOME; HAPLOTYPE; MOLECULAR EVOLUTION; SPECIES DIFFERENTIATION;

ANIMALIA; NYMPHALIDAE; NYMPHALINI; PAPILIONOIDEA; POLYGONIA; POLYGONIA OREAS; POLYGONIA SATYRUS;

ANIMALS; BAYES THEOREM; BUTTERFLIES; CELL NUCLEUS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENES, MITOCHONDRIAL; GENETIC SPECIATION; GENOME, INSECT; HAPLOTYPES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 66549104485     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-92     Document Type: Article

References (82)

1. Revealing factors that promote speciation. TG Barraclough AP Vogler PH Harvey, Philos Trans R Soc Lond B Biol Sci 1998 353 241 249 10.1098/rstb.1998. 0206
2. Detecting the geographical pattern of speciation from species-level phylogenies. TG Barraclough AP Vogler, Am Nat 2000 155 419 434 10.1086/303332 10753072
3. Evolutionary relationship of DNA-sequences in finite populations. F Tajima, Genetics 1983 105 437 460 6628982 (Pubitemid 14247444)
4. Gene trees and species trees are not the same. R Nichols, Trends Ecol Evol 2001 16 358 364 10.1016/S0169-5347(01)02203-0 11403868
5. The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus. C-T Ting S-C Tsaur C-I Wu, Proceedings of the National Academy of Sciences USA 2000 97 5313 5316 10.1073/pnas.090541597
6. Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. D Bachtrog K Thornton A Clark P Andolfatto, Evolution 2006 60 292 302 16610321 (Pubitemid 44804555)
7. Differential patterns of hybridization and introgression between the swallowtails Papilio machaon and P. hospiton from Sardinia and Corsica islands (Lepidopera, Papilionidae). R Cianchi A Ungaro M Marini L Bullini, Mol Ecol 2003 12 1461 1471 10.1046/j.1365-294X.2003.01813.x 12755875
8. Gene flow and the genealogical history of Heliconius heurippa. C Salazar CD Jiggins JE Taylor MR Kronforst M Linares, BMC Evol Biol 2008 8 132 18454858 10.1186/1471-2148-8-132
9. Leaky prezygotic isolation and porous genomes: rapid introgression of maternally inherited DNA. KMA Chan SA Levin, Evolution 2005 59 720 729 15926684 (Pubitemid 40589284)
10. Incongruence of mitochondrial and nuclear gene trees in the carabid beetles Ohomopterus. T Sota AP Vogler, Syst Biol 2001 50 39 59 12116593
11. Radiation and reticulation: extensive introgressive hybridization in the carabid beetles Ohomopterus inferred from mitochondrial gene genealogy. T Sota, Popul Ecol 2002 44 145 156 10.1007/s101440200018
12. Mitonuclear discordance is caused by rampant mitochondrial introgression in Neodiprion (Hymenoptera: Diprionidae) sawflies. CR Linnen BD Farrel, Evolution 2007 61 1417 1438 10.1111/j.1558-5646.2007.00114.x 17542850
13. Polyphyly and gene flow between non-sibling Heliconius species. V Bull M Beltrán CD Jiggins WO McMillan E Bermingham J Mallet, BMC Biology 2006 4 11 16630334 10.1186/1741-7007-4-11
14. Multilocus analyses of admixture and introgression among hybridizing Heliconius butterflies. MR Kronforst LG Young LM Blume LE Gilbert, Evolution 2006 60 1254 1268 16892975 (Pubitemid 44804483)
15. Is homoplasy or lineage sorting the source of incongruent mtDNA and nuclear gene trees in the Stiff-tailed Ducks (Nomonyx-Oxyura)? KG McCracken MD Sorensen, Syst Biol 2005 54 35 55 10.1080/10635150590910249 15805009
16. Hybridization as an invasion of the genome. J Mallet, Trends Ecol Evol 2005 20 229 237 10.1016/j.tree.2005.02.010 16701374
17. Gene flow persists millions of years after speciation in Heliconius butterflies. MR Kronforst, BMC Evol Biol 2008 8 98 18371203 10.1186/1471-2148-8- 98
18. Host plant specialization and seasonality in a polyphagous butterfly, Polygonia c-album (Nymphalidae). S Nylin, Oikos 1988 53 381 386 10.2307/3565539 (Pubitemid 19324048)
19. The role of female search behaviour in determining host plant range in plant feeding insects: a test of the information processing hypothesis. N Janz S Nylin, Proceedings of the Royal Society of London Series B Biological Sciences 1997 264 701 707 10.1098/rspb.1997.0100
20. Sex-linked inheritance of host-plant specialization in a polyphagous butterfly. N Janz, Proceedings of the Royal Society of London Series B Biological Sciences 1998 265 1675 1678 10.1098/rspb.1998.0487
21. Dynamics of host plant use and species diversity: a phylogenetic investigation in Polygonia butterflies (Nymphalidae). E Weingartner N Wahlberg S Nylin, J Evol Biol 2006 19 483 491 10.1111/j.1420-9101.2005.01009.x 16599924
22. Seasonal plasticity in life-history traits growth and development in Polygonia c-album (Lepidoptera, Nymphalidae). S Nylin, Biol J Linn Soc 1992 47 3 301 323 10.1111/j.1095-8312.1992.tb00672.x (Pubitemid 24409799)
23. A sex difference in the propensity to enter direct/diapause development a result of selection for protandry. C Wiklund PO Wickman S Nylin, Evolution 1992 46 2 519 528 10.2307/2409868
24. Thermal ecology of gregarious and solitary nettle-feeding nymphalid butterfly larvae. SR Bryant CD Thomas JS Bale, Oecologia 2000 122 1 10 10.1007/PL00008825 (Pubitemid 30104695)
25. Sperm reflux and its role in multiple mating in males of a butterfly Polygonia c-aureum Linnaeus (Lepidoptera: Nymphalidae). S Hiroyoshi J Mitsuhashi, J Insect Physiol 1999 45 2 107 112 10.1016/S0022-1910(98)00091-2 12770378
26. Separation of bombyxin from a neuropeptide of Bombyx mori showing summer-morph-producing hormone (SMPH) activity in the Asian comma butterfly, Polygonia c-aureum L. D Tanaka T Sakurama K Mitsumasu A Yamanaka K Endo, J Insect Physiol 1997 43 2 197 201 10.1016/S0022-1910(96)00077-7 12769923
27. Butterflies of North America. 2. Scientific Names List for Butterfly Species of North America, North of Mexico. PA Opler AD Warren, Fort Collins, Colorado, USA: Gillette Museum Publications 2002 12500768
28. A catalogue of the butterflies of the United States and Canada, with a complete bibliography of the descriptive and systematic literature. JP Pelham, J Res Lepid 2008 40
29. The Butterflies of Russia. PY Gorbunov, Moscow, Russia: Russian Academy of Sciences 2001
30. Taxonomic notes on Polygonia Hubner, [1818] (Lepidoptera, Nymphalidae) with description of a new subspecies. SV Churkin, Helios (Moscow) 2003 4 132 147
31. Butterflies of British Columbia. CS Guppy JH Shepard, UBC Press in collaboration with the Royal British Columbia Museum 2001
32. The Butterflies of Canada. RA Layberry PW Hall JD Lafontaine, Toronto: University of Toronto Press 1998
33. Phylogenetic relationships and historical biogeography of tribes and genera in the subfamily Nymphalinae (Lepidoptera: Nymphalidae). N Wahlberg AVZ Brower S Nylin, Biol J Linn Soc 2005 86 227 251 10.1111/j.1095-8312.2005.00531.x
34. Butterfly host plant range: an example of plasticity as a promoter of speciation? S Nylin N Janz, Evol Ecol 2009 23 137 146 10.1007/s10682-007-9205-5
35. Phylogeny of Polygonia, Nymphalis and related butterflies (Lepidoptera: Nymphalidae): a total-evidence analysis. S Nylin K Nyblom F Ronquist N Janz J Belicek M Källersjö Zool J Linn Soc 2001 132 441 468 10.1111/j.1096-3642.2001.tb02470.x
36. Morphology versus molecules: resolution of the positions of Nymphalis, Polygonia and related genera (Lepidoptera: Nymphalidae). N Wahlberg S Nylin, Cladistics 2003 19 213 223 10.1111/j.1096-0031.2003.tb00364.x
37. Pairwise comparisons of mitochondrial-DNA sequences in stable and exponentially growing populations. M Slatkin RR Hudson, Genetics 1991 129 555 562 1743491
38. Gene trees in species trees. WP Maddison, Syst Biol 1997 46 523 536 10.2307/2413694
39. Delimiting species without monophyletic gene trees. LL Knowles BC Carstens, Syst Biol 2007 56 887 895 10.1080/10635150701701091 18027282
40. Checklist of Finnish Lepidoptera Suomen perhosten luettelo. J Kullberg A Albrecht L Kaila V Varis, Sahlbergia 2001 6 45 190
41. Catalogus Lepidopterorum Norvegiae. L Aarvik K Berggren LO Hansen, s, Oslo: Lepidopterologisk arbeidsgruppe, Zoologisk museum, Universitet i Oslo, Norsk institutt for skogsforskning 2000
42. The Butterflies of the Malay Peninsula. AS Corbet HM Pendlebury, Kuala Lumpur, Malaysia 4 1992
43. Nymphalidae part I. VK Tuzov, Guide to the Butterflies of the Palearctic Region Milano: Omnes Artes, Bozano GC, 2003 5 1 64
44. Notas sobre el ciclo de vida de Polygonia gargenteum (Dbl y Hew) (Nymphalidae). RGdl Maza Jdl Maza, Revista de la Sociedad Mexicana de Lepidopterología 1977 3 35 41
45. The Butterflies of North America. JA Scott, Stanford: Stanford University Press 1986
46. Butterflies of the Rocky Mountain States. CD Ferris F Brown, Norman, Oklahoma, USA: University of Oklahoma Press 1981
47. Ancient hybridization and mitochondrial capture between two species of chipmunks. JM Good S Hird N Reid JR Demboski SJ Steppan TR Martin-Nims J Sullivan, Mol Ecol 2008 17 1313 1327 10.1111/j.1365-294X.2007.03640.x 18302691
48. Sex ratio and unisexual sterility in animal hybrids. JBS Haldane, J Genet 1922 12 101 109 10.1007/BF02983075
49. Butterfly species and molecular phylogenies. FAH Sperling, Butterflies: Evolution and Ecology Taking Flight Chicago: University of Chicago Press, Boggs CL, Watt WB, Ehrlich PR, 2003 431 458
50. Patterns of postzygotic isolation in Lepidoptera. DC Presgraves, Evolution 2002 56 1168 1183 12144018 (Pubitemid 34792113)
51. A review of Polygonia progne (oreas) and P. gracilis (zephyrus) (Nymphalidae), including a new subspecies from the southern Rocky Mountains. JA Scott, J Res Lepid 1984 23 197 210 10.1016/0163-7827(84)90011-0
52. Phylogeography: The History and Formation of Species. JC Avise, Cambridge, MA: Harvard University Press 2000
53. Records of Polygonia haroldi (Dewitz, 1877) in Sonora, Mexico. R Krogen, Atalanta 2000 31 67 70
54. Mariposas dirunas del Valle de México. CR Beutelspacher, México City: Ediciones Científicas La Prensa Médica Mexicana 1980
55. Alberta Butterflies. CD Bird GJ Hilchie NG Kondla EM Pike FA Sperling, Edmonton: Provincial Museum of Alberta 1995
56. Systematic generalization, historical fate, and the species problem. RJ O'Hara, Syst Biol 1993 42 231 246 (Pubitemid 23971837)
57. Evolutionary history and the species problem. RJ O'Hara, Am Zool 1994 34 12 22
58. The general lineage concept of species, species criteria, and the process of speciation. K de Queiroz, Endless Forms: Species and Speciation Oxford: Oxford University Press, Howard DJ, Berlocher SH, 1998 57 75
59. Species concepts and species delimitation. K de Queiroz, Syst Biol 2007 56 879 886 10.1080/10635150701701083 18027281
60. Diversity begets diversity: host expansions and the diversification of plant-feeding insects. N Janz S Nylin N Wahlberg, BMC Evol Biol 2006 6 4 16420707 10.1186/1471-2148-6-4
61. Towards a better understanding of the higher systematics of Nymphalidae (Lepidoptera: Papilionoidea). N Wahlberg E Weingartner S Nylin, Mol Phylogenet Evol 2003 28 473 484 10.1016/S1055-7903(03)00052-6 12927132
62. Synergistic effects of combining morphological and molecular data in resolving the phylogeny of butterflies and skippers. N Wahlberg MF Braby AVZ Brower R de Jong M-M Lee S Nylin N Pierce FA Sperling R Vila AD Warren, Proc R Soc Lond B Biol Sci 2005 272 1577 1586 10.1098/rspb.2005.3124
63. Colonization of and radiation in South America by butterflies in the subtribe Phyciodina (Lepidoptera: Nymphalidae). N Wahlberg AVL Freitas, Mol Phylogenet Evol 2007 44 1257 1272 10.1016/j.ympev.2007.04.012 17560801
64. Higher level phylogeny of Satyrinae butterflies (Lepidoptera: Nymphalidae) based on DNA sequence data. C Pẽa N Wahlberg E Weingartner U Kodandaramaiah S Nylin AVL Freitas AVZ Brower, Mol Phylogenet Evol 2006 40 29 49 10.1016/j.ympev.2006.02.007 16563805
65. Prehistorical climate change increased diversification of a group of butterflies. C Pẽa N Wahlberg, Biology Letters 2008 4 274 278 10.1098/rsbl.2008.0062 18364308
66. Phylogenetic relationships of subfamilies and circumscriptions of tribes in the family Hesperiidae (Lepidoptera: Hesperioidea). AD Warren JR Ogawa AVZ Brower, Cladistics 2008 24 642 676 10.1111/j.1096-0031.2008.00218.x
67. Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of Lepidoptera. N Wahlberg CW Wheat, Syst Biol 2008 57 231 242 10.1080/10635150802033006 18398768
68. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucl Acids Symp Ser 1999 41 95 98
69. T. N. T. (Tree Analysis using New Technology). PA Goloboff JS Farris KC Nixon, Published by the authors 1.0 2004 http://www.cladistics.com
70. Analyzing large data sets in reasonable times: solutions for composite optima. PA Goloboff, Cladistics 1999 15 415 428 10.1111/j.1096-0031.1999. tb00278.x (Pubitemid 30203168)
71. The parsimony ratchet, a new method for rapid parsimony analysis. KC Nixon, Cladistics 1999 15 407 414 10.1111/j.1096-0031.1999.tb00277.x (Pubitemid 30203167)
72. Searching for most parsimonious trees with simulated evolutionary optimization. A Moilanen, Cladistics 1999 15 39 50 10.1111/j.1096-0031.1999. tb00393.x (Pubitemid 29337899)
73. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. K Bremer, Evolution 1988 42 795 803 10.2307/2408870
74. Branch support and tree stability. K Bremer, Cladistics 1994 10 295 304 10.1111/j.1096-0031.1994.tb00179.x
75. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. RH Baker R DeSalle, Syst Biol 1997 46 654 673 10.2307/2413499 11975337 (Pubitemid 127366000)
76. Corroboration among data sets in simultaneous analysis: hidden support for phylogenetic relationships among higher level artiodactyl taxa. J Gatesy P O'Grady RH Baker, Cladistics 1999 15 271 313 10.1111/j.1096-0031.1999.tb00268.x
77. BEAST: Bayesian evolutionary analysis by sampling trees. AJ Drummond A Rambaut, BMC Evol Biol 2007 7 214 17996036 10.1186/1471-2148-7-214
78. Relaxed phylogenetics and dating with confidence. AJ Drummond SYW Ho MJ Phillips A Rambaut, Plos Biology 2006 4 5 699 710 10.1371/journal.pbio.0040088
79. That awkward age for butterflies: insights from the age of the butterfly subfamily Nymphalinae. N Wahlberg, Syst Biol 2006 55 703 714 10.1080/10635150600913235 16952908
80. MrBayes 3: Bayesian phylogenetic inference under mixed models. F Ronquist JP Huelsenbeck, Bioinformatics 2003 19 1572 1574 10.1093/bioinformatics/btg180 12912839
81. TCS: a computer program to estimate gene genealogies. D Posada KA Crandall, Mol Ecol 2000 9 1657 1660 10.1046/j.1365-294x.2000.00887.x 11050560
82. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. AR Templeton KA Crandall CF Sing, Genetics 1992 132 619 633 1385266