An iron-sulfur cluster is essential for the binding of broken DNA by AddAB-type helicase-nucleases

Journal of Biological Chemistry

Volumn 284, Issue 12, 2009, Pages 7746-7755

  Yeeles, Joseph T P ^a   Cammack, Richard ^b   Dillingham, Mark S ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

^b KING'S COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ATP-ASE ACTIVITY; CYSTEINE RESIDUES; DNA HELICASE; DOUBLE-STRANDED DNA BREAKS; DUPLEX DNA; HELICASE; IRON-SULFUR CLUSTERS; NUCLEASE DOMAIN; SEQUENCE ANALYSIS; SINGLE-STRANDED DNA;

COORDINATION REACTIONS; DNA; IRON ANALYSIS; NUCLEIC ACIDS; SULFUR;

GENES;

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE DEPENDENT DEOXYRIBONUCLEASE SUBUNIT AB; CYSTEINE; DNA; DOUBLE STRANDED DNA; HELICASE; IRON; NUCLEASE; PROTEIN DNA2; SINGLE STRANDED DNA; SULFUR; UNCLASSIFIED DRUG; ADDAB ENZYME; BACTERIAL DNA; BACTERIAL PROTEIN; DNA2 PROTEIN, S CEREVISIAE; EXODEOXYRIBONUCLEASE; SACCHAROMYCES CEREVISIAE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; MUTAGENESIS; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; BACILLUS SUBTILIS; DOUBLE STRANDED DNA BREAK; ENZYMOLOGY; GENETICS; METABOLISM; PHYSIOLOGY; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

BACTERIA (MICROORGANISMS); EUKARYOTA;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; DNA BREAKS, DOUBLE-STRANDED; DNA HELICASES; DNA, BACTERIAL; EXODEOXYRIBONUCLEASES; IRON; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ANALYSIS, PROTEIN; SEQUENCE HOMOLOGY, AMINO ACID; SULFUR;

EID: 65549136266     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M808526200     Document Type: Article

References (62)

1. Wyman, C., and Kanaar, R. (2006) Annu. Rev. Genet. 40, 363-383
2. Kowalczykowski, S. C. (2000) Trends Biochem. Sci. 25, 156-165
3. San Filippo, J., Sung, P., and Klein, H. (2008) Annu. Rev. Biochem. 77, 229-257
4. Chedin, F., and Kowalczykowski, S. C. (2002) Mol. Microbiol. 43, 823-834
5. Rocha, E. P., Cornet, E., and Michel, B. (2005) PLoS Genet. 1, e15
6. Zuniga-Castillo, J., Romero, D., and Martinez-Salazar, J. M. (2004) J. Bacteriol. 186, 7905-7913
7. Amundsen, S. K., Fero, J., Hansen, L. M., Cromie, G. A., Solnick, J. V., Smith, G. R., and Salama, N. R. (2008) Mol. Microbiol. 69, 994-1007
8. Mertens, K., Lantsheer, L., Ennis, D. G., and Samuel, J. E. (2008) Mol. Microbiol. 69, 1411-1426
9. Dillingham, M. S., and Kowalczykowski, S. C. (2008) Microbiol. Mol. Biol. Rev. 72, 642-671
10. Anderson, D. G., and Kowalczykowski, S. C. (1997) Genes Dev. 11, 571-581
11. Dillingham, M. S., Spies, M., and Kowalczykowski, S. C. (2003) Nature 423, 893-897
12. Taylor, A. F., and Smith, G. R. (2003) Nature 423, 889-893
13. Wang, J., Chen, R., and Julin, D. A. (2000) J. Biol. Chem. 275, 507-513
14. Yu, M., Souaya, J., and Julin, D. A. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 981-986
15. Aravind, L., Makarova, K. S., and Koonin, E. V. (2000) Nucleic Acids Res. 28, 3417-3432
16. Yeeles, J. T., and Dillingham, M. S. (2007) J. Mol. Biol. 371, 66-78
17. Quiberoni, A., Biswas, I., El Karoui, M., Rezaiki, L., Tailliez, P., and Gruss, A. (2001) J. Bacteriol. 183, 4071-4078
18. Aravind, L., Walker, D. R., and Koonin, E. V. (1999) Nucleic Acids Res. 27, 1223-1242
19. Sisakova, E., Stanley, L. K., Weiserova, M., and Szczelkun, M. D. (2008) Nucleic Acids Res. 36, 3939-3949
20. Rudolf, J., Makrantoni, V., Ingledew, W. J., Stark, M. J., and White, M. F. (2006) Mol. Cell 23, 801-808
21. Pieroni, L., Khalil, L., Charlotte, F., Poynard, T., Piton, A., Hainque, B., and Imbert-Bismut, F. (2001) Clin. Chem. 47, 2059-2061
22. Hogbom, M., Ericsson, U. B., Lam, R., Bakali, H. M., Kuznetsova, E., Nordlund, P., and Zamble, D. B. (2005) Mol. Cell. Proteomics 4, 827-834
23. Ferrer, M., Golyshina, O. V., Beloqui, A., Golyshin, P. N., and Timmis, K. N. (2007) Nature 445, 91-94
24. Bruschi, M., Hatchikian, C., Le Gall, J., Moura, J. J., and Xavier, A. V. (1976) Biochim. Biophys. Acta 449, 275-284
25. Beinert, H., and Thomson, A. J. (1983) Arch. Biochem. Biophys. 222, 333-361
26. Thomson, A. J., Robinson, A. E., Johnson, M. K., Cammack, R., Rao, K. K., and Hall, D. O. (1981) Biochim. Biophys. Acta 637, 423-432
27. Meyer, J. (2008) J. Biol. Inorg. Chem. 13, 157-170
28. Meyer, J. (1988) Trends Ecol. Evol. 3, 222-226
29. Johnson, D. C., Dean, D. R., Smith, A. D., and Johnson, M. K. (2005) Annu. Rev. Biochem. 74, 247-281
30. Michaels, M. L., Pham, L., Nghiem, Y., Cruz, C., and Miller, J. H. (1990) Nucleic Acids Res. 18, 3841-3845
31. Cunningham, R. P., Asahara, H., Bank, J. F., Scholes, C. P., Salerno, J. C., Surerus, K., Munck, E., McCracken, J., Peisach, J., and Emptage, M. H. (1989) Biochemistry 28, 4450-4455
32. Chedin, F., Ehrlich, S. D., and Kowalczykowski, S. C. (2000) J. Mol. Biol. 298, 7-20
33. Eggleston, A. K., Rahim, N. A., and Kowalczykowski, S. C. (1996) Nucleic Acids Res. 24, 1179-1186
34. Lohman, T. M., Tomko, E. J., and Wu, C. G. (2008) Nat. Rev. Mol. Cell. Biol. 9, 391-401
35. Singleton, M. R., Dillingham, M. S., and Wigley, D. B. (2007) Annu. Rev. Biochem. 76, 23-50
36. Roman, L. J., and Kowalczykowski, S. C. (1989) Biochemistry 28, 2873-2881
37. Singleton, M. R., Dillingham, M. S., Gaudier, M., Kowalczykowski, S. C., and Wigley, D. B. (2004) Nature 432, 187-193
38. Morris, P. D., and Raney, K. D. (1999) Biochemistry 38, 5164-5171
39. Kinch, L. N., Ginalski, K., Rychlewski, L., and Grishin, N. V. (2005) Nucleic Acids Res. 33, 3598-3605
40. Rigden, D. J. (2005) BMC Struct. Biol. 5, 9
41. Daly, M. J., Gaidamakova, E. K., Matrosova, V. Y., Vasilenko, A., Zhai, M., Venkateswaran, A., Hess, M., Omelchenko, M. V., Kostandarithes, H. M., Makarova, K. S., Wackett, L. P., Fredrickson, J. K., and Ghosal, D. (2004) Science 306, 1025-1028
42. Posey, J. E., and Gherardini, F. C. (2000) Science 288, 1651-1653
43. Pandey, A., Bringel, F., and Meyer, J. M. (1994) Appl. Microbiol. Biotechnol. 40, 735-739
44. Archibald, F. (1983) FEMS Microbiol. Lett. 19, 29-32
45. Gostick, D. O., Green, J., Irvine, A. S., Gasson, M. J., and Guest, J. R. (1998) Microbiology 144, 705-717
46. Jang, S., and Imlay, J. A. (2007) J. Biol. Chem. 282, 929-937
47. Holmes, K., Mulholland, F., Pearson, B. M., Pin, C., McNicholl-Kennedy, J., Ketley, J. M., and Wells, J. M. (2005) Microbiology 151, 243-257
48. Klinge, S., Hirst, J., Maman, J. D., Krude, T., and Pellegrini, L. (2007) Nat. Struct. Mol. Biol. 14, 875-877
49. Lambert, A. R., Sussman, D., Shen, B., Maunus, R., Nix, J., Samuelson, J., Xu, S. Y., and Stoddard, B. L. (2008) Structure 16, 558-569
50. Weiner, B. E., Huang, H., Dattilo, B. M., Nilges, M. J., Fanning, E., and Chazin, W. J. (2007) J. Biol. Chem. 282, 33444-33451
51. Hirata, A., Klein, B. J., and Murakami, K. S. (2008) Nature 451, 851-854
52. Thayer, M. M., Ahern, H., Xing, D., Cunningham, R. P., and Tainer, J. A. (1995) EMBO J. 14, 4108-4120
53. Guan, Y., Manuel, R. C., Arvai, A. S., Parikh, S. S., Mol, C. D., Miller, J. H., Lloyd, S., and Tainer, J. A. (1998) Nat. Struct. Biol. 5, 1058-1064
54. Chepanoske, C. L., Golinelli, M. P., Williams, S. D., and David, S. S. (2000) Arch. Biochem. Biophys. 380, 11-19
55. Pugh, R. A., Honda, M., Leesley, H., Thomas, A., Lin, Y., Nilges, M. J., Cann, I. K., and Spies, M. (2008) J. Biol. Chem. 283, 1732-1743
56. Bae, S. H., Bae, K. H., Kim, J. A., and Seo, Y. S. (2001) Nature 412, 456-461
57. Budd, M. E., and Campbell, J. L. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 7642-7646
58. Budd, M. E., and Campbell, J. L. (2000) Mutat. Res. 459, 173-186
59. Fiorentino, D. F., and Crabtree, G. R. (1997) Mol. Biol. Cell 8, 2519-2537
60. Tomita, K., Kibe, T., Kang, H. Y., Seo, Y. S., Uritani, M., Ushimaru, T., and Ueno, M. (2004) Mol. Cell. Biol. 24, 9557-9567
61. Liao, S., Toczylowski, T., and Yan, H. (2008) Nucleic Acids Res. 36, 6091-6100
62. Zhu, Z., Chung, W. H., Shim, E. Y., Lee, S. E., and Ira, G. (2008) Cell 134, 981-994