A helicase assay based on the displacement of fluorescent, nucleic acid-binding ligands

Nucleic Acids Research

Volumn 24, Issue 7, 1996, Pages 1179-1186

  Eggleston, Angela K ^a,b   Rahim, Nazir A ^a   Kowalczykowski, Stephen C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

4 [5 (4 METHYL 1 PIPERAZINYL)[2,5' BI 1H BENZIMIDAZOL] 2' YL]PHENOL; 4',6 DIAMIDINO 2 PHENYLINDOLE; ACRIDINE ORANGE; DOUBLE STRANDED DNA; ETHIDIUM BROMIDE; FLUORESCENT DYE; HELICASE; NUCLEIC ACID BINDING PROTEIN; THIAZOLE ORANGE;

ARTICLE; DNA DENATURATION; ENZYME ASSAY; ENZYME KINETICS; ESCHERICHIA COLI; LIGAND BINDING; NONHUMAN; PRIORITY JOURNAL;

DNA; DNA HELICASES; DNA, SINGLE-STRANDED; DNA-BINDING PROTEINS; FLUORESCENT DYES; KINETICS; LIGANDS; METHODS; SODIUM CHLORIDE; SPECTROMETRY, FLUORESCENCE; TEMPERATURE;

ESCHERICHIA COLI;

EID: 0029879214     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.7.1179     Document Type: Article

References (51)

1. Matson,S.W. and Kaiser-Rogers,K.A. (1990) Annu. Rev. Biochem. 59, 289-329.
2. Matson,S.W. (1991) In Progress in Nucleic Acid Research and Molecular Biology. Academic Press, NY, Vol. 40, pp 289-326.
3. Roman,L.J., Dixon,D.A. and Kowalczykowski,S.C. (1991) Proc. Natl. Acad. Sci. USA 88, 3367-3371.
4. Dixon,D.A. and Kowalczykowski,S.C. (1991) Cell 66, 361-371.
5. Tsaneva,I.R., Müller,B. and West,S.C. (1993) Cell 69, 1171-1180.
6. Hoeijmakers,J.H.J. (1991) J Cell. Sci. 100, 687-691.
7. Grossman,L. and Yeung,A.T. (1990) Mutat. Res. 236, 213-221.
8. Lin,J.J. and Sancar,A. (1992) Mol. Microbiol. 6, 2219-2224.
9. Modrich,P. (1989) J. Biol. Chem. 264, 6597-6600.
10. Schmid,S.R. and Linder,P (1992) Mol. Microbiol. 6, 283-292.
11. Brennan,C.A., Dombroski,A.J. and Platt,T. (1987) Cell 48, 945-952.
12. Rozen.F., Edery,I., Meerovitch,K., Dever,T.E., Merrick,W.C and Sonnenberg,N. (1990) Mol Cell. Biol. 10, 1134-1144.
13. Jaramillo,M., Dever,T.E., Menick,W.C and Sonnenberg,N. (1991) Mol Cell. Biol. 11, 5992-5997.
14. Sachs,A.B. and Davis,R.W. (1990) Science 247, 1077-1079.
15. Ripmaster,T.L., Vaughn,G.P. and Woolford,J.L., Jr. (1992) Proc. Natl. Acad. Sci. USA 89, 11131-11135.
16. Stepien,P.P., Margossian,S.P , Landsman,D. and Butow,R.A. (1992) Proc. Natl. Acad. Sci. USA 89, 6813-6817.
17. Abdel-Monem,M., Durwald,H. and Hoffmann-Berling,H. (1976) Eur. J. Biochem 65, 441-449.
18. Duguet,M , Yarranton,G. and Gefter,M. (1979) Cold Spring Harbor Symp. Quant. Biol. 43, 335-343.
19. Kuhn,B., Abdel-Monem,M and Hoffmann-Berling,H. (1979) Cold Spring Harbor Symp. Quant. Biol. 43, 63-67.
20. Palas,K.M. and Kushner,S.R. (1990) J. Biol. Chem. 265, 3447-3454.
21. Taylor,A.F. and Smith,G.R. (1980) Cell 22, 447-457.
22. Baumel,I, Meyer,T.F. and Geider,K (1984) Eur. J. Biochem. 138, 247-251.
23. Benz,J., Muller,H., Abdel-Monem,M. and Hoffman-Berling,H. (1986) Acta Microbiologica Polonica 35, 191-197.
24. Runyon,G.T., Bear,D.G. and Lohman,T.M. (1990) Proc Natl. Acad. Sci. USA 87, 6383-6387.
25. Dodson,M., Dean,F.B., Bullock,P. Echols,H. and Hurwitz,J. (1987) Science 238, 964-967.
26. Venkatesan,M., Silver,L.L. and Nossal,N.G. (1982) J. Biol Chem. 257, 12426-12434.
27. Matson,S.W., Tabor,S and Richardson,C.C. (1983) J. Biol. Chem. 258, 14017-14024.
28. Roman,L.J. and Kowalczykowski,S.C. (1989) Biochemistry 28, 2863-2873.
29. Houston,P., and Kodadek,T. (1994) Proc. Natl. Acad. Sci. USA 91, 5471-5474.
30. Bjornson,K.P., Amaratunga,M., Moore,K.J.M. and Lohman,T.M. (1994) Biochemistry 33, 14306-14316.
31. Raney,K D., Sowers,L.C., Millar,D.P. and Benkovic,S.J. (1994) Proc. Natl. Acad. Sci. USA 91, 6644-6648.
32. Roman,L.J., Eggleston,A.K. and Kowalczykowski,S.C. (1992) J. Biol. Chem. 267, 4207-4214.
33. Kapuscinski,J. and Szer,W. (1979) Nucleic Acids Res. 6, 3519-3534.
34. Manzini,G., Barcellona,M.L., Avitabile,M. and Quadrifoglio,F. (1983) Nucleic Acids Res. 11, 8861-8876
35. Glazer,A.N. and Rye,H.S. (1992) Nature 359, 859-861
36. George,J.W , Ghate,S., Matson,S.W. and Besterman,J.M. (1992) J Biol. Chem. 267, 10683-10689.
37. Sambrook,J., Fritsch,E.F. and Maniatis,T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
38. Messing,J. (1983) Methods Enzymol. 101, 20-78.
39. Eggleston,A.K. and Kowalczykowski,S.C. (1993) J. Mol. Biol. 231, 605-620.
40. Eichler,D.C. and Lehman,I R. (1977) J. Biol Chem. 252, 499-503.
41. LcBowitz,J. (1985) Ph.D. Thesis, The Johns Hopkins University. Baltimore, MD.
42. Ruyechan,W.T. and Wetmur,J.G. (1976) Biochemistry 15, 5057-5064.
43. Dixon,D.A. (1993) Ph.D. Thesis, Northwestern University, Evanston, Illinois.
44. Eggleston,A.K. and Kowalczykowski,S.C. (1993) J. Mol. Biol. 231, 621-633.
45. Latt,S A and Stetten,G. (1976) J. Histochem Cytochem. 24, 24-33.
46. Korangy,F. and Julin,D.A. (1992) J. Biol. Chem. 267, 3088-3095.
47. Mame,I.P., Sun,D., Hurley,L H. and Kodadek,T. (1992) Biochemistry 31, 3968-3975
48. Sun,D. and Hurley,L.H. (1992) J. Med. Chem. 35, 1773-1782.
49. Bachur,N.R., Yu,F., Johnson,R., Hickey,R., Wu,Y. and Malkas,L. (1992) Mol. Pharm. 41, 993-998.
50. Griep,M A. (1995) Anal. Chem. 232, 180-189.
51. Eegleston,A.K. (1993) Ph.D. Thesis, Northwestern University, Evanston, IL.