Control of replication initiation by the Sum1/Rfm1/Hst1 histone deacetylase

BMC Molecular Biology

Volumn 9, Issue , 2008, Pages

  Weber, Jan M ^a   Irlbacher, Horst ^b   Ehrenhofer Murray, Ann E ^a  

^a UNIVERSITY OF DUISBURG ESSEN   (Germany)

^b BAYER PHARMA AG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; GLUTAMINE; HISTONE DEACETYLASE 1; HISTONE H4; LYSINE; REPRESSION FACTOR OF MIDDLE SPORULATION ELEMENT 1; SUPPRESSOR OF MAR 1; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; HISTONE; HISTONE DEACETYLASE; HST1 PROTEIN, S CEREVISIAE; NUCLEAR PROTEIN; ORIGIN RECOGNITION COMPLEX; RFM1 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; SIRTUIN; SUM1 PROTEIN, S CEREVISIAE;

ACETYLATION; ARTICLE; CHROMATIN; COMPLEX FORMATION; CONTROLLED STUDY; DEACETYLATION; DNA REPLICATION ORIGIN; FUNGAL GENETICS; GENE MUTATION; GENE REPLICATION; NONHUMAN; PROTEIN FUNCTION; YEAST; ANIMAL; DNA REPLICATION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MUTATION; PLASMID; SACCHAROMYCES CEREVISIAE;

ACETYLATION; ANIMALS; DNA REPLICATION; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; HISTONE DEACETYLASES; HISTONES; MUTATION; NUCLEAR PROTEINS; ORIGIN RECOGNITION COMPLEX; PLASMIDS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SIRTUINS;

EID: 56749105947     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-9-100     Document Type: Article

References (38)

1. Bell SP Dutta A: DNA replication in eukaryotic cells. Annu Rev Biochem 2002, 71:333-374. 10.1146/annurev.biochem.71.110601.135425 12045100
2. Marahrens Y Stillman B: A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science 1992, 255(5046):817-823. 10.1126/science.1536007 1536007
3. Lee DG Bell SP: Architecture of the yeast origin recognition complex bound to origins of DNA replication. Mol Cell Biol 1997, 17(12):7159-7168. 232573 9372948
4. Zou L Stillman B: Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase. Mol Cell Biol 2000, 20(9):3086-3096. 85601 10757793 10.1128/MCB.20.9.3086-3096.2000
5. Wilmes GM Bell SP; The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation. Proc Natl Acad Sci USA 2002, 99(1):101-106. 117521 11756674 10.1073/pnas.012578499
6. Diffley JF Stillman B: Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer. Proc Natl Acad Sci USA 1988, 85(7):2120-2124. 279940 3281162 10.1073/pnas.85.7.2120
7. Lipford JR Bell SP; Nucleosomes positioned by ORC facilitate the initiation of DNA replication. Mol Cell 2001, 7(1):21-30. 10.1016/ S1097-2765(01)00151-4 11172708
8. Kimmerly W Buchman A Kornberg R Rine J: Roles of two DNA-binding factors in replication, segregation and transcriptional repression mediated by a yeast silencer. Embo J 1988, 7(7):2241-2253. 454575 3046937
9. Chang VK Donato JJ Chan CS: Tye BK Mcm1 promotes replication initiation by binding specific elements at replication origins. Mol Cell Biol 2004, 24(14):6514-6524. 434236 15226450 10.1128/MCB.24.14.6514-6524.2004
10. Li R Yu DS Tanaka M Zheng L Berger SL Stillman B: Activation of chromosomal DNA replication in Saccharomyces cerevisiae by acidic transcriptional activation domains. Mol Cell Biol 1998, 18(3):1296-1302. 108842 9488444
11. Irlbacher H Franke J Manke T Vingron M Ehrenhofer-Murray AE: Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression. Genes Dev 2005, 19(15):1811-1822. 1182343 16077008 10.1101/gad.334805
12. Xie J Pierce M Gailus-Durner V Wagner M Winter E Vershon AK: Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae. Embo J 1999, 18(22):6448-6454. 1171707 10562556 10.1093/emboj/18.22.6448
13. Pierce M Benjamin KR Montano SP Georgiadis MM Winter E Vershon AK: Sum1 and Ndt80 proteins compete for binding to middle sporulation element sequences that control meiotic gene expression. Mol Cell Biol 2003, 23(14):4814-4825. 162219 12832469 10.1128/MCB.23.14.4814-4825.2003
14. McCord R Pierce M Xie J Wonkatal S Mickel C Vershon AK: Rfm1, a novel tethering factor required to recruit the Hst1 histone deacetylase for repression of middle sporulation genes. Mol Cell Biol 2003, 23(6):2009-2016. 149475 12612074 10.1128/MCB.23.6.2009-2016.2003
15. Suter B Tong A Chang M Yu L Brown GW Boone C Rine J: The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae. Genetics 2004, 167(2):579-591. 1470908 15238513 10.1534/genetics.103.024851
16. Lynch PJ Fraser HB Sevastopoulos E Rine J Rusche LN: Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in Saccharomyces cerevisiae. Mol Cell Biol 2005, 25(14):5920-5932. 1168811 15988008 10.1128/MCB.25.14.5920-5932.2005
17. Sutton A Heller RC Landry J Choy JS Sirko A Sternglanz R: A novel form of transcriptional silencing by Sum1-1 requires Hst1 and the origin recognition complex. Mol Cell Biol 2001, 21(10):3514-3522. 100273 11313477 10.1128/MCB.21.10.3514-3522.2001
18. Rusche LN Rine J: Conversion of a gene-specific repressor to a regional silencer. Genes Dev 2001, 15(8):955-967. 312676 11316790 10.1101/ gad.873601
19. Weinreich M Palacios DeBeer MA Fox CA: The activities of eukaryotic replication origins in chromatin. Biochim Biophys Acta 2004, 1677(1-3):142-157. 15020055
20. Flanagan JF Peterson CL: A role for the yeast SWI/SNF complex in DNA replication. Nucleic Acids Res 1999, 27(9):2022-2028. 148416 10198436 10.1093/nar/27.9.2022
21. Vogelauer M Rubbi L Lucas I Brewer BJ Grunstein M: Histone acetylation regulates the time of replication origin firing. Mol Cell 2002, 10:1223-1233. 10.1016/S1097-2765(02)00702-5 12453428
22. Aparicio JG Viggiani CJ Gibson DG Aparicio OM: The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae. Mol Cell Biol 2004, 24(11):4769-4780. 416400 15143171 10.1128/MCB.24.11.4769-4780.2004
23. Pappas DL Jr Frisch R Weinreich M: The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication. Genes Dev 2004, 18(7):769-781. 387417 15082529 10.1101/gad.1173204
24. Crampton A Chang F Pappas DL Jr Frisch R Weinreich M: An ARS Element Inhibits DNA Replication through a SIR2-Dependent Mechanism. Mol Cell 2008, 30(2):156-166. 10.1016/j.molcel.2008.02.019 18439895
25. Bedalov A Hirao M Posakony J Nelson M Simon JA: NAD+-dependent deacetylase Hst1p controls biosynthesis and cellular NAD+ levels in Saccharomyces cerevisiae. Mol Cell Biol 2003, 23(19):7044-7054. 193940 12972620 10.1128/MCB.23.19.7044-7054.2003
26. Wyrick JJ Aparicio JG Chen T Barnett JD Jennings EG Young RA Bell SP Aparicio OM: Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: High-resolution mapping of replication origins. Science 2001, 294(5550):2357-2360. 10.1126/science.1066101 11743203
27. Robert F Pokholok DK Hannett NM Rinaldi NJ Chandy M Rolfe A Workman JL Gifford DK Young RA: Global position and recruitment of HATs and HDACs in the yeast genome. Mol Cell 2004, 16(2):199-209. 10.1016/ j.molcel.2004.09.021 15494307
28. Megee PC Morgan BA Mittman BA Smith MM: Genetic analysis of histone H4: essential role of lysines subject to reversible acetylation. Science 1990, 247(4944):841-845. 10.1126/science.2106160 2106160
29. Imai S Armstrong CM Kaeberlein M Guarente L: Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase. Nature 2000, 403(6771):795-800. 10.1038/35001622 10693811
30. Becker PB Horz W: ATP-dependent nucleosome remodeling. Annu Rev Biochem 2002, 71:247-273. 10.1146/annurev.biochem.71.110601.135400 12045097
31. Snyder M Sapolsky RJ Davis RW: Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae. Mol Cell Biol 1988, 8(5):2184-2194. 363400 3290652
32. Lupien M Eeckhoute J Meyer CA Wang Q Zhang Y Li W Carroll JS Liu XS Brown M: FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 2008, 132(6):958-970. 2323438 18358809 10.1016/j.cell.2008.01.018
33. Shimada K Gasser SM: The origin recognition complex functions in sister-chromatid cohesion in Saccharomyces cerevisiae. Cell 2007, 128(1):85-99. 10.1016/j.cell.2006.11.045 17218257
34. Kohzaki H Murakami Y: Transcription factors and DNA replication origin selection. Bioessays 2005, 27(11):1107-1116. 10.1002/bies.20316 16237674
35. Sambrook J Fritsch EF Maniatis T: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor: Cold Spring Harbor Laboratory press 1989
36. Wach A Brachat A Pohlmann R Philippsen P: New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 1994, 10(13):1793-1808. 10.1002/yea.320101310 7747518
37. McNally FJ Rine J: A synthetic silencer mediates SIR-dependent functions in Saccharomyces cerevisiae. Mol Cell Biol 1991, 11(11):5648-5659. 361936 1922068
38. Sikorski RS Hieter P: A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 1989, 122(1):19-27. 1203683 2659436