Biochemical and biophysical analyses of concerted (U5/U3) integration

Methods

Volumn 47, Issue 4, 2009, Pages 229-236

  Grandgenett, Duane P ^a   Bera, Sibes ^a   Pandey, Krishan K ^a   Vora, Ajaykumar C ^a   Zahm, Jacob ^a   Sinha, Sapna ^a  

^a SAINT LOUIS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Integrase; Preintegration complex; Reconstituted system; Retrovirus concerted integration; Synaptic complex

Indexed keywords

HEPARIN; INTEGRASE; LENS EPITHELIUM DERIVED GROWTH FACTOR; PROTEIN P75; RALTEGRAVIR; SEPHAROSE; RNA, U3 SMALL NUCLEOLAR; SMALL NUCLEAR RNA; SMALL NUCLEOLAR RNA; U5 SMALL NUCLEAR RNA; VIRUS DNA;

ACQUIRED IMMUNE DEFICIENCY SYNDROME; AGAR GEL ELECTROPHORESIS; ARTICLE; COLUMN CHROMATOGRAPHY; CYTOLYSIS; FLUORESCENCE RESONANCE ENERGY TRANSFER; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; IN VITRO STUDY; PRIORITY JOURNAL; PROTEIN INTERACTION; VIRUS DNA CELL DNA INTERACTION; CHEMISTRY; PHYSIOLOGY; PROTEIN DOMAIN;

DNA, VIRAL; HIV-1; HUMANS; PROTEIN INTERACTION DOMAINS AND MOTIFS; RNA, SMALL NUCLEAR; RNA, SMALL NUCLEOLAR; VIRUS INTEGRATION;

HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 64649089647     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2008.11.002     Document Type: Article

References (50)

1. Craigie R. In: Craig N.L., Craigie R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), ASM Press, Washington, DC 613-630
2. Miller M.D., Farnet C.M., and Bushman F.D. J. Virol. 71 (1997) 5382-5390
3. Chen H., and Engelman A. Mol. Cell. Biol. 21 (2001) 6758-6767
4. Hazuda D.J., Felock P., Witmer M., Wolfe A., Stillmock K., Grobler J.A., Espeseth A., Gabryelski L., Schleif W., Blau C., and Miller M.D. Science 287 (2000) 646-650
5. Hazuda D.J., Anthony N.J., Gomez R.P., Jolly S.M., Wai J.S., Zhuang L., Fisher T.E., Embrey M., Guare Jr. J.P., Egbertson M.S., Vacca J.P., Huff J.R., Felock P.J., Witmer M.V., Stillmock K.A., Danovich R., Grobler J., Miller M.D., Espeseth A.S., Jin L., Chen I.W., Lin J.H., Kassahun K., Ellis J.D., Wong B.K., Xu W., Pearson P.G., Schleif W.A., Cortese R., Emini E., Summa V., Holloway M.K., and Young S.D. Proc. Natl. Acad. Sci. USA 101 (2004) 11233-11238
6. Evering T.H., and Markowitz M. Drugs Today (Barc) 43 (2007) 865-877
7. Goodarzi G., Im G.J., Brackmann K., and Grandgenett D. J. Virol. 69 (1995) 6090-6097
8. Sinha S., Pursley M.H., and Grandgenett D.P. J. Virol. 76 (2002) 3105-3113
9. Sinha S., and Grandgenett D. J. Virol. 79 (2005) 8208-8216
10. Li M., and Craigie R. J. Biol. Chem. 280 (2005) 29334-29339
11. Li M., Mizuuchi M., Burke Jr. T.R., and Craigie R. EMBO J. 25 (2006) 1295-1304
12. Pandey K.K., Bera S., Zahm J., Vora A., Stillmock K., Hazuda D., and Grandgenett D.P. J. Virol. 81 (2007) 12189-12199
13. Pandey K.K., Sinha S., and Grandgenett D.P. J. Virol. 81 (2007) 3969-3979
14. McCord M., Stahl S.J., Mueser T.C., Hyde C.C., Vora A.C., and Grandgenett D.P. Protein Expr. Purif. 14 (1998) 167-177
15. Hindmarsh P., Johnson M., Reeves R., and Leis J. J. Virol. 75 (2001) 1132-1141
16. Chiu R., and Grandgenett D.P. J. Virol. 77 (2003) 6482-6492
17. Vora A.C., and Grandgenett D.P. J. Virol. 69 (1995) 7483-7488
18. Vora A.C., Chiu R., McCord M., Goodarzi G., Stahl S.J., Mueser T.C., Hyde C.C., and Grandgenett D.P. J. Biol. Chem. 272 (1997) 23938-23945
19. Vora A., and Grandgenett D.P. J. Virol. 75 (2001) 3556-3567
20. Zahm J.A., Bera S., Pandey K.K., Vora A., Stillmock K., Hazuda D., and Grandgenett D.P. Antimicrob. Agents Chemother. 52 (2008) 3358-3368
21. Grandgenett D.P., Inman R.B., Vora A.C., and Fitzgerald M.L. J. Virol. 67 (1993) 2628-2636
22. Cherepanov P., Surratt D., Toelen J., Pluymers W., Griffith J., De Clercq E., and Debyser Z. Nucleic Acids Res. 27 (1999) 2202-2210
23. Vora A.C., McCord M., Fitzgerald M.L., Inman R.B., and Grandgenett D.P. Nucleic Acids Res. 22 (1994) 4454-4461
24. Bushman F.D., and Craigie R. Proc. Natl. Acad. Sci. USA 88 (1991) 1339-1343
25. Vora A., Bera S., and Grandgenett D. J. Biol. Chem. 279 (2004) 18670-18678
26. Goodarzi G., Chiu R., Brackmann K., Kohn K., Pommier Y., and Grandgenett D.P. Virology 231 (1997) 210-217
27. Goodarzi G., Pursley M., Felock P., Witmer M., Hazuda D., Brackmann K., and Grandgenett D. J. Virol. 73 (1999) 8104-8111
28. Chen H., Wei S.Q., and Engelman A. J. Biol. Chem. 274 (1999) 17358-17364
29. Farnet C.M., and Haseltine W.A. Proc. Natl. Acad. Sci. USA 87 (1990) 4164-4168
30. Moreau K., Torne-Celer C., Faure C., Verdier G., and Ronfort C. Virology 278 (2000) 133-136
31. Brin E., and Leis J. J. Biol. Chem. 277 (2002) 18357-18364
32. Hindmarsh P., Ridky T., Reeves R., Andrake M., Skalka A.M., and Leis J. J. Virol. 73 (1999) 2994-3003
33. Fitzgerald M.L., and Grandgenett D.P. J. Virol. 68 (1994) 4314-4321
34. Aiyar A., Hindmarsh P., Skalka A.M., and Leis J. J. Virol. 70 (1996) 3571-3580
35. Brin E., and Leis J. J. Biol. Chem. 277 (2002) 10938-10948
36. Moreau K., Faure C., Violot S., Verdier G., and Ronfort C. Eur. J. Biochem. 270 (2003) 4426-4438
37. Hazuda D.J., Young S.D., Guare J.P., Anthony N.J., Gomez R.P., Wai J.S., Vacca J.P., Handt L., Motzel S.L., Klein H.J., Dornadula G., Danovich R.M., Witmer M.V., Wilson K.A., Tussey L., Schleif W.A., Gabryelski L.S., Jin L., Miller M.D., Casimiro D.R., Emini E.A., and Shiver J.W. Science 305 (2004) 528-532
38. Engelman A., and Cherepanov P. PLoS Pathog. 4 (2008) e1000046
39. Poeschla E.M. Cell. Mol. Life Sci. 65 (2008) 1403-1424
40. Llano M., Saenz D.T., Meehan A., Wongthida P., Peretz M., Walker W.H., Teo W., and Poeschla E.M. Science 314 (2006) 461-464
41. Marshall H.M., Ronen K., Berry C., Llano M., Sutherland H., Saenz D., Bickmore W., Poeschla E., and Bushman F.D. PLoS ONE 2 (2007) e1340
42. Shun M.C., Raghavendra N.K., Vandegraaff N., Daigle J.E., Hughes S., Kellam P., Cherepanov P., and Engelman A. Genes Dev. 21 (2007) 1767-1778
43. Holman A.G., and Coffin J.M. Proc. Natl. Acad. Sci. USA 102 (2005) 6103-6107
44. Wu X., Li Y., Crise B., Burgess S.M., and Munroe D.J. J. Virol. 79 (2005) 5211-5214
45. Cherepanov P., Maertens G., Proost P., Devreese B., Van Beeumen J., Engelborghs Y., De Clercq E., and Debyser Z. J. Biol. Chem. 278 (2003) 372-381
46. Cherepanov P., Sun Z.Y., Rahman S., Maertens G., Wagner G., and Engelman A. Nat. Struct. Mol. Biol. 12 (2005) 526-532
47. Raghavendra N.K., and Engelman A. Virology 360 (2007) 1-5
48. Bera S., Vora A.C., Chiu R., Heyduk T., and Grandgenett D.P. Biochemistry 44 (2005) 15106-15114
49. Al-Mawsawi L.Q., Christ F., Dayam R., Debyser Z., and Neamati N. FEBS Lett. 582 (2008) 1425-1430
50. Hayouka Z., Rosenbluh J., Levin A., Loya S., Lebendiker M., Veprintsev D., Kotler M., Hizi A., Loyter A., and Friedler A. Proc. Natl. Acad. Sci. USA 104 (2007) 8316-8321