Host site selection for concerted integration by human immunodeficiency virus type-1 virions in vitro

Virology

Volumn 231, Issue 2, 1997, Pages 210-217

  Goodarzi, Goodarz ^a   Chiu, Roger ^a   Brackmann, Karl ^b   Kohn, Kurt ^c   Pommier, Yves ^c   Grandgenett, Duane P ^a  

^a SAINT LOUIS UNIVERSITY   (United States)

^b Genetics Systems Corporation   (United States)

^c NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INTEGRASE;

ARTICLE; DNA SEQUENCE; GENE DELETION; GENE DUPLICATION; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRUS REPLICATION;

EID: 0030908147     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8558     Document Type: Article

References (31)

1. Aiyar A., Hindmarsh P., Skalka A. M., Leis J. Concerted integration of linear retroviral DNA by the avian sarcoma virus integrase in vitro: Dependence on both long terminal repeat termini. J. Virol. 70:1996;3571-3580.
2. Brenner S., Beckwith J. R. Oche mutants, a new class of suppressible nonsense mutants. J. Mol. Biol. 13:1965;629-637.
3. Brown P. O., Bowerman B., Varmus H. E., Bishop J. M. Correct integration of retroviral DNA in vitro. Cell. 49:1987;347-356.
4. Bushman F. D., Fujiwara T., Craigie R. Retroviral DNA integration directed by HIV integration protein in vitro. Science. 249:1990;1555-1558.
5. Ellison V., Abrams H., Roe T., Lifson J., Brown P. Human immunodeficiency virus integration in a cell-free system. J. Virol. 64:1990;2711-2715.
6. Ellison V., Gerton J., Vincent K. A., Brown P. An essential interaction between distinct domains of HIV-1 integrase mediates assembly of the active multimer. J. Biol. Chem. 270:1995;3320-3326.
7. Engelman A., Bushman F. D., Craigie R. Identification of discrete functional domains of HIV-1 integrase and their organization within an active multimeric complex. EMBO J. 12:1993;3269-3275.
8. Farnet C. M., Haseltine W. A. Integration of human immunodeficiency virus type 1 DNA in vitro. Proc. Natl. Acad. Sci. USA. 87:1990;4164-4168.
9. Fitzgerald M. L., Vora A. C., Zeh W. G., Grandgenett D. P. Concerted integration of viral DNA termini by purified avian myeloblastosis virus integrase. J. Virol. 66:1992;6257-6263.
10. Fitzgerald M. L., Grandgenett D. P. Retroviral integration: In vitro host site selection by avian integrase. J. Virol. 68:1994;4314-4321.
11. Fujiwara T., Mizuuchi K. Retroviral DNA integration: Structure of an integration intermediate. Cell. 54:1989;497-504.
12. Goff S. P. Genetics of retroviral integration. Annu. Rev. Genet. 26:1992;527-544.
13. Goodarzi G., Im G.-J., Brackmann K., Grandgenett D. P. Concerted integration of retrovirus-like DNA by human immunodeficiency virus type I integrase. J. Virol. 69:1995;6090-6097.
14. Grandgenett D. P., Inman R. B., Vora A. C., Fitzgerald M. F. Comparison of DNA binding and integration half-site selection by avian myeloblastosis virus integrase. J. Virol. 67:1993;2628-2636.
15. Kitamura Y., Lee Y. M., Coffin J. M. Nonrandom integration of retroviral DNA in vitro: Effect of CpG methylation. Proc. Natl. Acad. Sci. USA. 89:1992;5532-5536.
16. Lapadat-Taposlky M., Rocquigny H. D., van Gent D., Roques B., Plasterk R., Darlix J.-L. Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle. Nucleic Acid. Res. 7:1993;831-839.
17. Lee Y. M., Coffin J. M. Relationship of avian retrovirus DNA synthesis to integration in vitro. Mol. Cell. Biol. 11:1991;1419-1430.
18. Lutz C. T., Hollifield W. C., Seed B., Davie J. M., Huang H. V. Syrinx 2A: An improved λ phage vector designed for screening DNA libraries by recombinationin vivo. Proc. Natl. Acad. Sci. USA. 84:1987;4379-4383.
19. Misra T. K., Grandgenett D. P., Parsons J. T. Avian retrovirus pp32 DNA binding protein. I. Recognition of specific sequences on retrovirus DNA terminal repeats. J. Virol. 44:1982;330-343.
20. 2+2+. J. Biol. Chem. 271:1996;1498-1506.
21. Pryciak P. M., Sil A., Varmus H. E. Retroviral integration into minichromosomes in vitro. EMBO J. 11:1992;291-303.
22. Sandmeyer S. B., Hansen L. J., Chalker D. L. Integration specificity of retrotransposons and retroviruses. Annu. Rev. Genet. 24:1990;491-518.
23. Stevens S. W., Griffith J. D. Sequence analysis of the human DNA flanking site of human immunodeficiency virus type 1 integration. J. Virol. 70:1996;6459-6462.
24. Tanizawa A., Kohn K. W., Pommier Y. Induction of cleavage in topoisomerase I c-DNA by topoisomerase I enzymes from calf thymus and wheat germ in the presence and absence of camptothecin. Nucleic Acid. Res. 21:1993;5157-5166.
25. Tsuchihashi Z., Brown P. DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein. J. Virol. 68:1994;5863-5870.
26. van Gent D. C., Vink C., Oude, Groenger A. A. M., Plasterk R. H. A. Complementation between HIV integrase proteins mutated in different domains. EMBO J. 12:1993;3261-3267.
27. H. E. Varmus, 1983, Retroviruses, Mobile Genetic Elements, 411, 503, Academic Press, New York.
28. Vora A. C., Grandgenett D. P. Assembly and catalytic properties of retrovirus integrase-DNA complexes capable of efficiently performing concerted integration. J. Virol. 69:1995;7483-7488.
29. Vora A. C., McCord M., Fitzgerald M. L., Inman R. B., Grandgenett D. P. Efficient concerted integration of retrovirus-like DNA in vitro by avian myeloblastosis virus integrase. Nucleic Acids Res. 22:1994;4454-4461.
30. Withers-Ward E. S., Kitamura Y., Barnes J. B., Coffin J. M. Distribution of targets for avian retrovirus DNA integration in vivo. Genes Dev. 8:1994;1473-1487.
31. Wolfe A. L., Felock P. J., Hastings J. C., Uncapher Blau C., Hazuda D. J. The role of manganese in promoting multimerization and assembly of human imunodeficiency virus type 1 integrase as a catalytically active complex on immobilized long terminal repeat substrates. J. Virol. 70:1996;1424-1432.