-
1
-
-
0842342616
-
A genome-wide oscillation in transcription gates DNA replication and cell cycle
-
Klevecz RR, Bolen J, Forrest G Murray DB (2004) A genome-wide oscillation in transcription gates DNA replication and cell cycle. Proc Natl Acad Sci USA 101, 1200 1205.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1200-1205
-
-
Klevecz, R.R.1
Bolen, J.2
Forrest, G.3
Murray, D.B.4
-
2
-
-
33750823409
-
A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change
-
Li CM Klevecz RR (2006) A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change. Proc Natl Acad Sci USA 103, 16254 16259.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 16254-16259
-
-
Li, C.M.1
Klevecz, R.R.2
-
4
-
-
48249114344
-
Evolution of the clock from yeast to man by period doubling of the cellular oscillator
-
in press.
-
Klevecz RR Li CM (2007) Evolution of the clock from yeast to man by period doubling of the cellular oscillator. Cold Springs Harbor Symposium 72, in press.
-
(2007)
Cold Springs Harbor Symposium
, vol.72
-
-
Klevecz, R.R.1
Li, C.M.2
-
6
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L, Friedman N Xie XS (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440, 358 362.
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
7
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
-
Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, DeRisi JL Weissman JS (2006) Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441, 840 846.
-
(2006)
Nature
, vol.441
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
Derisi, J.L.6
Weissman, J.S.7
-
9
-
-
0000498082
-
Control of oscillating glycolysis of yeast by stochastic, periodic, and steady source of substrate: A model and experimental study
-
Boiteux A, Goldbeter A Hess B (1975) Control of oscillating glycolysis of yeast by stochastic, periodic, and steady source of substrate: a model and experimental study. Proc Natl Acad Sci USA 72, 3829 3833.
-
(1975)
Proc Natl Acad Sci USA
, vol.72
, pp. 3829-3833
-
-
Boiteux, A.1
Goldbeter, A.2
Hess, B.3
-
11
-
-
34248993889
-
Gene expression waves. Cell cycle independent collective dynamics in cultured cells
-
Tsuchiya M, Wong ST, Yeo ZX, Colosimo A, Palumbo MC, Farina L, Crescenzi M, Mazzola A, Negri R, Bianchi MM et al. (2007) Gene expression waves. Cell cycle independent collective dynamics in cultured cells. FEBS J 274, 2878 2886.
-
(2007)
FEBS J
, vol.274
, pp. 2878-2886
-
-
Tsuchiya, M.1
Wong, S.T.2
Yeo, Z.X.3
Colosimo, A.4
Palumbo, M.C.5
Farina, L.6
Crescenzi, M.7
Mazzola, A.8
Negri, R.9
Bianchi, M.M.10
-
12
-
-
0037867771
-
Generation and maintenance of synchrony
-
In Saccharomyces cerevisiae continuous culture.
-
Murray DB, Klevecz RR Lloyd D (2003) Generation and maintenance of synchrony. In Saccharomyces cerevisiae continuous culture. Exp Cell Res 287, 10 15.
-
(2003)
Exp Cell Res
, vol.287
, pp. 10-15
-
-
Murray, D.B.1
Klevecz, R.R.2
Lloyd, D.3
-
13
-
-
0037157194
-
Respiratory oscillations is yeast: Clock-driven mitochondrial cycles of energization
-
Lloyd D, Eshantha L, Salgado J, Turner MP Murray DB (2002) Respiratory oscillations is yeast: Clock-driven mitochondrial cycles of energization. FEBS Lett 519, 41 44.
-
(2002)
FEBS Lett
, vol.519
, pp. 41-44
-
-
Lloyd, D.1
Eshantha, L.2
Salgado, J.3
Turner, M.P.4
Murray, D.B.5
-
14
-
-
1542572798
-
Metabolic integration during the evolutionary origin of mitochondria
-
Searcy DG (2003) Metabolic integration during the evolutionary origin of mitochondria. Cell Res 13, 229 238.
-
(2003)
Cell Res
, vol.13
, pp. 229-238
-
-
Searcy, D.G.1
-
15
-
-
0019440094
-
A mycoplasma-like archaebacterium possibly related to the nucleus and cytoplasms of eukaryotic cells
-
Searcy DG, Stein DB Searcy KB (1981) A mycoplasma-like archaebacterium possibly related to the nucleus and cytoplasms of eukaryotic cells. Ann NY Acad Sci 361, 312 324.
-
(1981)
Ann NY Acad Sci
, vol.361
, pp. 312-324
-
-
Searcy, D.G.1
Stein, D.B.2
Searcy, K.B.3
-
16
-
-
27944487902
-
Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes
-
Tu BP, Kudlicki A, Rowicka M McKnight SL (2005) Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310, 1152 1158.
-
(2005)
Science
, vol.310
, pp. 1152-1158
-
-
Tu, B.P.1
Kudlicki, A.2
Rowicka, M.3
McKnight, S.L.4
-
17
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C Feldman MW (2002) Evolutionary rate in the protein interaction network. Science 296, 750 752.
-
(2002)
Science
, vol.296
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
18
-
-
23144441172
-
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry
-
Tao WA, Wollscheid B, O'Brien R, Eng JK, Li XJ, Bodenmiller B, Watts JD, Hood L Aebersold R (2005) Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. Nat Methods 2, 579 580.
-
(2005)
Nat Methods
, vol.2
, pp. 579-580
-
-
Tao, W.A.1
Wollscheid, B.2
O'Brien, R.3
Eng, J.K.4
Li, X.J.5
Bodenmiller, B.6
Watts, J.D.7
Hood, L.8
Aebersold, R.9
-
19
-
-
32544434809
-
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data
-
Macisaac KD, Gordon DB, Nekludova L, Odom DT, Schreiber J, Gifford DK, Young RA Fraenkel E (2006) A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data. Bioinformatics 22, 423 429.
-
(2006)
Bioinformatics
, vol.22
, pp. 423-429
-
-
MacIsaac, K.D.1
Gordon, D.B.2
Nekludova, L.3
Odom, D.T.4
Schreiber, J.5
Gifford, D.K.6
Young, R.A.7
Fraenkel, E.8
-
20
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
et al. (
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M Ayivi-Guedehoussou N et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 43, 1173 1178.
-
(2005)
Nature
, vol.43
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
-
21
-
-
20144381803
-
Integration with the human genome of peptide sequences obtained by high-throughput mass specrometry
-
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S et al. (2004) Integration with the human genome of peptide sequences obtained by high-throughput mass specrometry. Genome Biol 6, R9.
-
(2004)
Genome Biol
, vol.6
-
-
Desiere, F.1
Deutsch, E.W.2
Nesvizhskii, A.I.3
Mallick, P.4
King, N.L.5
Eng, J.K.6
Aderem, A.7
Boyle, R.8
Brunner, E.9
Donohoe, S.10
-
22
-
-
0344464733
-
Gene Expression Dynamics Inspector (GEDI): For integrative analysis of expression profiles
-
Eichler GS, Huang S Ingber DE (2003) Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles. Bioinformatics 19, 2321 2322.
-
(2003)
Bioinformatics
, vol.19
, pp. 2321-2322
-
-
Eichler, G.S.1
Huang, S.2
Ingber, D.E.3
-
23
-
-
0015173025
-
Oscillatory phenomena in biochemistry
-
Hess B Boiteux A (1971) Oscillatory phenomena in biochemistry. Annu Rev Biochem 40, 237 258.
-
(1971)
Annu Rev Biochem
, vol.40
, pp. 237-258
-
-
Hess, B.1
Boiteux, A.2
-
24
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter O, Brown PO Botstein D (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci USA 97, 10101 10106.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
25
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ et al. (1998) A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell 2, 65 73.
-
(1998)
Mol Cell
, vol.2
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.G.7
Gabrielian, A.E.8
Landsman, D.9
Lockhart, D.J.10
-
26
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D Futcher B (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9, 3273 3297.
-
(1998)
Mol Biol Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
27
-
-
0034682504
-
Fundamental patterns underlying gene expression profiles: Simplicity from complexity
-
Holter NS, Mitra M, Maritan A, Cieplak M, Banavar JR Fedoroff NV (2000) Fundamental patterns underlying gene expression profiles: simplicity from complexity. Proc Natl Acad Sci USA 97, 8409 8414.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 8409-8414
-
-
Holter, N.S.1
Mitra, M.2
Maritan, A.3
Cieplak, M.4
Banavar, J.R.5
Fedoroff, N.V.6
-
28
-
-
0033809582
-
Tuning in the transcriptome: Basins of attraction in the yeast cell cycle
-
Klevecz RR Dowse HB (2000) Tuning in the transcriptome: basins of attraction in the yeast cell cycle. Cell Proliferat 33, 209 218.
-
(2000)
Cell Proliferat
, vol.33
, pp. 209-218
-
-
Klevecz, R.R.1
Dowse, H.B.2
-
29
-
-
0034334515
-
Dynamic architecture of the yeast cell cycle uncovered by wavelet decomposition of expression microarray data
-
Klevecz RR (2000) Dynamic architecture of the yeast cell cycle uncovered by wavelet decomposition of expression microarray data. Funct Integrat Genomics 1, 186 192.
-
(2000)
Funct Integrat Genomics
, vol.1
, pp. 186-192
-
-
Klevecz, R.R.1
-
30
-
-
0036739284
-
Geometry of gene expression dynamics
-
Rifkin SA Kim J (2002) Geometry of gene expression dynamics. Bioinformatics 18, 1176 1183.
-
(2002)
Bioinformatics
, vol.18
, pp. 1176-1183
-
-
Rifkin, S.A.1
Kim, J.2
-
31
-
-
0037452966
-
Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms
-
Alter O, Brown PO Botstein D (2003) Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms. Proc Natl Acad Sci USA 100, 3351 3356.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 3351-3356
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
32
-
-
0034863048
-
Processing and modeling genome-wide expression data using singular value decomposition
-
Alter O, Brown PO Botstein D (2001) Processing and modeling genome-wide expression data using singular value decomposition. Microarrays: Opt Technol Informatics 4266, 171 186.
-
(2001)
Microarrays: Opt Technol Informatics
, vol.4266
, pp. 171-186
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
33
-
-
0018891216
-
Mammalian cell cycles need two random transitions
-
Brooks RF, Bennett DC Smith JA (1980) Mammalian cell cycles need two random transitions. Cell 19, 493 504.
-
(1980)
Cell
, vol.19
, pp. 493-504
-
-
Brooks, R.F.1
Bennett, D.C.2
Smith, J.A.3
-
34
-
-
84990623205
-
Quasi-exponential generation time distributions from a limit cycle oscillator
-
Klevecz RR Shymko RM (1985) Quasi-exponential generation time distributions from a limit cycle oscillator. Cell Tissue Kinet 18, 263 271.
-
(1985)
Cell Tissue Kinet
, vol.18
, pp. 263-271
-
-
Klevecz, R.R.1
Shymko, R.M.2
-
35
-
-
0008559457
-
Quantized generation time in mammalian cells as an expression of the cellular clock
-
Klevecz RR (1976) Quantized generation time in mammalian cells as an expression of the cellular clock. Proc Natl Acad Sci USA 73, 4012 4016.
-
(1976)
Proc Natl Acad Sci USA
, vol.73
, pp. 4012-4016
-
-
Klevecz, R.R.1
-
36
-
-
0034720002
-
Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
-
Warrington JA, Nair A, Mahadevappa M Tsyganskaya M (2000) Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes. Physiol Genomics 2, 143 147.
-
(2000)
Physiol Genomics
, vol.2
, pp. 143-147
-
-
Warrington, J.A.1
Nair, A.2
Mahadevappa, M.3
Tsyganskaya, M.4
-
38
-
-
0000514377
-
Self-Organization in biological tissues: Analysis of asynchronous and synchronous periodicity, turbulence and synchronous chaos emergent in coupled chaotic arrays
-
Klevecz RR, Bolen J Duran O (1992) Self-Organization in biological tissues: analysis of asynchronous and synchronous periodicity, turbulence and synchronous chaos emergent in coupled chaotic arrays. Int J Bifurcation Chaos 2, 941 953.
-
(1992)
Int J Bifurcation Chaos
, vol.2
, pp. 941-953
-
-
Klevecz, R.R.1
Bolen, J.2
Duran, O.3
-
39
-
-
0007876868
-
Amplification and damping of deterministic noise in coupled cellular arrays
-
Bolen JL, Duran O Klevecz RR (1993) Amplification and damping of deterministic noise in coupled cellular arrays. Physica D 67, 245 256.
-
(1993)
Physica D
, vol.67
, pp. 245-256
-
-
Bolen, J.L.1
Duran, O.2
Klevecz, R.R.3
-
40
-
-
0032303288
-
Phenotypic heterogeneity and genotypic instability in coupled cellular arrays
-
Klevecz RR (1998) Phenotypic heterogeneity and genotypic instability in coupled cellular arrays. Physica D 124, 1 10.
-
(1998)
Physica D
, vol.124
, pp. 1-10
-
-
Klevecz, R.R.1
-
41
-
-
0037795575
-
Toward a detailed computational model for the mammalian circadian clock
-
Leloup JC Goldbeter A (2003) Toward a detailed computational model for the mammalian circadian clock. Proc Natl Acad Sci USA 100, 7051 7056.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7051-7056
-
-
Leloup, J.C.1
Goldbeter, A.2
|