Diversity of cyanobacteria and heterotrophic bacteria in cyanobacterial blooms in Lake Joutikas, Finland

Aquatic Microbial Ecology

Volumn 36, Issue 3, 2004, Pages 201-211

  Kolmonen, E ^a   Sivonen, K ^a   Rapala, J ^b,c   Haukka, K ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b FINNISH ENVIRONMENT INSTITUTE   (Finland)

^c Natl Prod Contr Agy Welf Hlth   (Finland)

Author keywords

Cyanobacteria; DGGE; Diversity; DNA; Heterotrophic bacteria; RNA

Indexed keywords

ACTINOBACTERIA; ANABAENA; APHANIZOMENON; BACTERIA (MICROORGANISMS); BACTERIODES; BACTEROIDES; BACTEROIDETES; CHLOROFLEXI (CLASS); CYANOBACTERIA; CYTOPHAGA; DELTAPROTEOBACTERIA; FLAVOBACTERIUM; MICROCYSTIS; PROTEOBACTERIA; SYNECHOCOCCUS; VERRUCOMICROBIA;

EID: 6344294929     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame036201     Document Type: Article

References (61)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Bernard L, Schäfer H, Joux F, Courues C, Muyzer G, Lebaron P (2000) Genetic diversity of total, active and culturable marine bacteria in coastal seawater. Aquat Microb Ecol 23:1-11
3. Binder BJ, Liu YC (1998) Growth rate regulation of rRNA content of a marine Synechococcus (Cyanobacterium) strain. Appl Environ Microbiol 64:3346-3351
4. Björnsson L, Hugenholtz P, Tyson GW, Blackall LL (2002) Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology 148:2309-2318
5. Bosshard PP, Santini Y, Grüter D, Stettler R, Bachofen R (2000) Bacterial diversity and community composition in the chemocline of the meromictic alpine Lake Cadagno as revealed by 16S rDNA analysis. FEMS Microbiol Ecol 31:173-182
6. Bouvy M, Pagano M, Troussellier M (2001) Effects of a cyanobacterial bloom (Cylindrospermopsis raciborskii) on the bacteria and zooplankton communities in Ingazeira reservoir (northeast Brazil). Aquat Microb Ecol 25:215-227
7. Casamayor EO, Schäfer H, Baneras L, Pedrós-Alió C, Muyzer G (2000) Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Appl Environ Microbiol 66:499-508
8. Casamayor EO, Pedrós-Alió C, Muyzer G, Amann R (2002) Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations. Appl Environ Microbiol 68:1706-1714
9. Castenholz RW (2001) Phylum BX. Cyanobacteria. In: Boone, DR, Castenholz RW (eds) Bergey's Manual of Systematic Bacteriology, 2nd edn, Vol 1. Springer-Verlag, New York, p 566-571
10. Cottrell MT, Kirchman DL (2000) Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66:1692-1697
11. Crump BC, Armbrust EV, Baross JA (1999) Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65:3192-3204
12. Fegatella F, Lim J, Kjelleberg S, Cavicchioli R (1998) Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256. Appl Environ Microbiol 64:4433-4438
13. Flärdh K, Cohen PS, Kjelleberg S (1992) Ribosomes exist in large excess over the apparent demand for protein synthesis during carbon starvation in marine Vibrio sp. strain CCUG 15956. J Bacteriol 174:6780-6788
14. Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A, Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl Environ Microbiol 66:5053-5065
15. Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66:5488-5491
16. Gugger M, Lyra C, Henriksen P, Couté A, Humbert JF, Sivonen K (2002) Phylogenetic comparison of the cyanobacterial genera Anabaena and Aphanizomenon. Int J Syst Evol Microbiol 52:1867-1880
17. Hiorns WD, Methe BA, Nierzwicki-Bauer SA, Zehr JP (1997) Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl Environ Microbiol 63:2957-2960
18. Höfle MG, Haas H, Dominik K (1999) Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl Environ Microbiol 65:3164-3174
19. Iteman I, Rippka R, Tandeau de Marsac N, Herdman M (2002) rDNA analyses of planktonic heterocystous cyanobacteria, including members of the genera Anabaenopsis and Cyanospira. Microbiology 148:481-496
20. Jaspers E, Nauhaus K, Cypionka H, Overmann J (2001) Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton. FEMS Microbiol Ecol 36:153-164
21. Kemp PF, Lee S, LaRoche J (1993) Estimating the growth rate of slowly growing marine bacteria from RNA content. Appl Environ Microbiol 59:2594-2601
22. Kenzaka T, Yamaguchi N, Tani K, Nasu M (1998) rRNA-targeted fluorescent in situ hybridization analysis of bacterial community structure in river water. Microbiology 144:2085-2093
23. Kisand V, Wikner J (2003) Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences. J Microbiol Methods 54:183-191
24. Klappenbach JA, Dunbar JM, Schmidt TM (2000) rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol 66:1328-1333
25. Konopka A, Bercot T, Nakatsu C (1999) Bacterioplankton community diversity in a series of thermally stratified lakes. Microb Ecol 38:126-135
26. Kuiper-Goodman T, Falconer I, Fitzgerald J (1999) Human health aspects. In: Chorus I, Bartram J (eds) Toxic cyanobacteria in water. E & FN Spon on behalf of WHO, London, p 113-153
27. Larkin JM (1989) Nonphotosynthetic, nonfruiting, gliding bacteria. In: Staley JT, Bryant MP, Pfennig, Holt JG (eds) Bergey's Manual of Systematic Bacteriology, 1st edn, Vol 3. Williams & Wilkins, Baltimore, p 2010-2050
28. Lee SH, Kemp PF (1994) Single-Cell RNA content of natural marine planktonic bacteria measured by hybridization with multiple 16S rRNA-targeted fluorescent probes. Limnol Oceanogr 39:869-879
29. Lindström ES, Leskinen E (2002) Do neighboring lakes share common taxa of bacterioplankton? Comparison of 16S rDNA fingerprints and sequences from three geographic regions. Microb Ecol 44:1-9
30. Mayer J, Dokulil MT, Salbrechter M, Berger M and 6 others (1997) Seasonal successions and trophic relations between phytoplankton, zooplankton, ciliate and bacteria in a hypertrophic shallow lake in Vienna, Austria. Hydrobiologia 342/343:165-174
31. Muylaert K, Van Der Gucht K, Vloemans N, Meester LD, Gillis M, Vyverman W (2002) Relationship between bacterial community composition and bottom-up versus topdown variables in four eutrophic shallow lakes. Appl Environ Microbiol 68:4740-4750
32. Muyzer G, Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73:127-141
33. Muyzer G, de Waal E, Uitterlinden A (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
34. Muyzer G, Teske A, Wirsen CO, Jannasch HW (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch Microbiol 164:165-172
35. Norris TB, Wraith JM, Castenholz RW, McDermott TR (2002) Soil microbial community structure across a thermal gradient following a geothermal heating event. Appl Environ Microbiol 68:6300-6309
36. Nübel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W, Backhaus H (1996) Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 178:5636-5643
37. O'Sullivan LA, Weightman AJ, Fry JC (2002) New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. Appl Environ Microbiol 68:201-210
38. 2 fixation products from Anabaena oscillarioides to associated bacteria during inorganic carbon sufficiency and deficiency. J Phycol 20:600-608
39. Pernthaler J, Glöckner FO, Unterholzner S, Alfreider A, Psenner R, Amann R (1998) Seasonal community and population dynamics of pelagic bacteria and archaea in a high mountain lake. Appl Environ Microbiol 64:4299-4306
40. Pernthaler A, Pernthaler J, Eilers H, Amann R (2001) Growth patterns of two marine isolates: adaptations to substrate patchiness? Appl Environ Microbiol 67:4077-4083
41. Pernthaler J, Posch T, Šimek K, Vrba J and 5 others (2001) Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Appl Environ Microbiol 67:2145-2155
42. Poulsen LK, Ballard G, Stahl DA (1993) Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl Environ Microbiol 59:1354-1360
43. Rapala J, Lahti K, Räsänen LA, Esala AL, Niemelä SI, Sivonen K (2002) Endotoxins associated with cyanobacteria and their removal during drinking water treatment. Water Res 36:2627-2635
44. Riemann L, Steward GF, Azam F (2000) Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl Environ Microbiol 66:578-587
45. Schäfer H, Bernard L, Courues C, Lebaron P and 7 others (2001) Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations. FEMS Microbiol Ecol 34:243-253
46. Sekar R, Pernthaler A, Pernthaler J, Warnecke F, Posch T, Amann R (2003) An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl Environ Microbiol 69:2928-2935
47. Sekiguchi H, Watanabe M, Nakahara T, Xu B, Uchiyama H (2002) Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl Environ Microbiol 68:5142-5150
48. Sivonen K, Niemelä SI, Niemi RM, Lepistö L, Luoma TH, Räsänen LA (1990) Toxic cyanobacteria (blue-green algae) in Finnish fresh and coastal waters. Hydrobiologia 190:267-275
49. Teske A, Wawer C, Muyzer G, Ramsing NB (1996) Distribution of sulfate-reducing bacteria in a stratified fjord (Manager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl Environ Microbiol 62:1405-1415
50. Troussellier M, Schäfer H, Batailler N, Bernard L and 5 others (2002) Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France). Aquat Microb Ecol 28:13-24
51. Trusova MY, Gladyshev MI (2002) Phylogenetic diversity of winter bacterioplankton of eutrophic Siberian reservoirs as revealed by 16S rRNA gene sequence. Microb Ecol 44:252-259
52. Urbach E, Vergin KL, Young L, Morse A (2001) Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake. Limnol Oceanogr 46:557-572
53. Van der Gucht K, Sabbe K, De Meester L, Vloemans N, Zwart G, Gillis M, Vyverman W (2001) Contrasting bacterio-plankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes. Environ Microbiol 3:680-690
54. van Hannen EJ, Mooij W, van Agterveld MP, Gons HJ, Laanbroek HJ (1999a) Detritus-dependent development of the microbial community in an experimental system: qualitative analysis by denaturing gradient gel electrophoresis. Appl Environ Microbiol 65:2478-2484
55. van Hannen EJ, Zwart G, van Agterveld MP, Gons HJ, Ebert J, Laanbroek HJ (1999b) Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl Environ Microbiol 65:795-801
56. Wang L, Priscu JC (1994) Stimulation of aquatic bacterial activity by cyanobacteria. Hydrobiologia 277:145-158
57. Winter C, Moeseneder MM, Herndl GJ (2001) Impact of UV radiation on bacterioplankton community composition. Appl Environ Microbiol 67:665-672
58. Wintzingerode F, Göbel UB, Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21:213-229
59. Worden AZ, Binder BJ (2003) Growth regulation of rRNA content in Prochlorococcus and Synechococcus (marine cyanobacteria) measured by whole-cell hybridization of rRNA-targeted peptide nucleic acids. J Phycol 39:527-534
60. Zwart G, Huismans R, van Agterveld MP, Van de Peer Y and 6 others (1998) Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake. FEMS Microbol Ecol 25:159-169
61. Zwart G, Crump BC, Kamst-van Agterveld MP, Hagen F, Han S (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28:141-155