Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton

FEMS Microbiology Ecology

Volumn 36, Issue 2-3, 2001, Pages 153-164

  Jaspers, Elke ^a   Nauhaus, Katja ^c   Cypionka, Heribert ^a   Overmann, Jörg ^a,b  

^a UNIVERSITY OF OLDENBURG   (Germany)

^b UNIVERSITY OF MUNICH   (Germany)

^c NONE

Author keywords

16S rRNA; Bacterioplankton; Culturability cultivation; Cytophaga; Diversity; Flavobacterium; Genomic fingerprinting

Indexed keywords

CARBON; RNA 16S;

BACTERIOPLANKTON; EUTROPHIC ENVIRONMENT; PHYLOGENETICS; TEMPORAL VARIATION;

ANIMAL CELL; ARTICLE; BACTERIAL GROWTH; BACTERIUM; BACTERIUM CULTURE; BACTERIUM ISOLATION; BIODIVERSITY; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; ECOLOGY; ENVIRONMENT; FLAVOBACTERIUM; FLEXIBACTERACEAE; GENOME; GERMANY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; PLANKTON; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA SEQUENCE; TIME;

BACTERIA (MICROORGANISMS); CYTOPHAGA; ENTEROBACTERIACEAE; FLAVOBACTERIA; FLAVOBACTERIUM;

EID: 0034933418     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(01)00129-5     Document Type: Article

References (53)

1. Bacterial production in fresh and saltwater ecosystems: A cross-system overview
2. Respiration rates in bacteria exceed phytoplankton production in unproductive aquatic systems
3. The ecological role of water-column microbes in the sea
4. Oceanic distribution of ammonium-oxidizing bacteria determined by immunofluorescent assay
5. Analysis of soil and bacterioplankton community DNA by melting profiles and reassociation kinetics
6. Bacterial community composition during two consecutive NE monsoon periods in the Arabian Sea studied by denaturing gradient gel electrophoresis (DGGE) of rRNA genes
7. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
8. Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample
9. High abundance of archaea in Antarctic marine picoplankton
10. Combination of fluorescent in situ hybridization and microautoradiography - A new tool for structure-function analyses in microbial ecology
11. Bacterial diversity at surface water in three locations within the Baltic sea as revealed by culture-dependent molecular techniques
12. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
13. High genetic and physiological diversity of sulfate-reducing bacteria isolated from an oligotrophic lake sediment
14. Detection of abundant sulphate-reducing bacteria in marine oxic sediment layers by a combined cultivation and molecular approach
15. Evaluation of cell activity and of methods for the cultivation of bacteria from a natural lake community
16. Separation of bacterial cells by isoelectric focusing: A new method for the analysis of complex microbial communities
17. Use of DAPI for identifying and counting aquatic microflora
18. Detection of viable, but non-culturable Pseudomonas fluorescens DF57 in soil using a microcolony epifluorescence technique
19. A computer program for the determination of most probable number and its confidence limits
20. Sulfate-reducing bacteria and their activities in cyanobacterial mats of Solar Lake (Sinai, Egypt)
21. Denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified 16S rDNA-a new molecular approach to analyse the genetic diversity of mixed microbial communities
22. Specific detection of different phylogenetic groups of chemocline bacteria based on PCR and denaturing gradient gel electrophoresis of 16S rRNA gene fragments
23. Phylogeny and molecular fingerprinting of green sulfur bacteria
24. 16S/23S rRNA sequencing
25. GenBank
26. The ribosomal database project
27. PHYLIP, phylogenetic inference package (version 3.2)
28. Measures of the amount of ecological association between species
29. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
30. The order Cytophagales
31. Culturability and in situ abundance of pelagic bacteria from the North Sea
32. Dominant marine bacterioplankton species found among colony-forming bacteria
33. Enumeration and detection of anaerobic ferrous iron-oxidizing, nitrate-reducing bacteria from diverse European sediments
34. Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level
35. Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA
36. Stability and diversity of the genetic structure of a Shewanella putrefaciens population in the water column of the central Baltic
37. Persistence and genetic diversity among strains of phycoerythrin-rich cyanobacteria from the picoplankton of Lake Constance
38. Taxonomic characterisation of Ochrobactrum sp. isolates from soil samples and wheat roots, and description of Ochrobactrum tritici sp. nov. and Ochrobactrum grignonense sp. nov.
39. Physiological diversity among strains of Tetragenococcus halophilus
40. Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake
41. Bacterial population dynamics in a meromictic lake
42. Novel techniques for analysing microbial diversity in natural and perturbed environments
43. Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing
44. Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
45. Seasonal community and population dynamics of pelagic bacteria and archaea in a high mountain lake
46. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
47. Bacterial diversity and community composition in the chemocline of the mromictic alpine Lake Cadagno as revealed by 16S rDNA analysis
48. High phylogenetic diversity in a marine-snow-associated bacterial assemblage
49. Variability in bacterial community structure during upwelling in the coastal ocean
50. Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
51. Genotyping of heterotrophic bacteria from the Central Baltic Sea by use of low-molecular-weight RNA profiles