Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations

Applied and Environmental Microbiology

Volumn 68, Issue 4, 2002, Pages 1706-1714

  Casamayor, Emilio O ^a   Pedrós Alió, Carlos ^a   Muyzer, Gerard ^a   Amann, Rudolf ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; DNA; ECOLOGY; ELECTROPHORESIS; GELS; MICROSCOPIC EXAMINATION;

PLANKTONIC POPULATION;

MICROBIOLOGY;

RIBOSOME DNA; RIBOSOME RNA;

BACTERIOPLANKTON; DNA FINGERPRINTING; FLOW CYTOMETRY; FLUORESCENCE; HETEROGENEITY; MICROSCOPY; TEMPORAL VARIATION;

ARTICLE; BACTERIOPLANKTON; CHLOROBIUM; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA SEQUENCE; EPIFLUORESCENCE MICROSCOPY; EVOLUTIONARY ADAPTATION; FLOW CYTOMETRY; FLUORESCENCE IN SITU HYBRIDIZATION; GENETIC VARIABILITY; GRAM NEGATIVE BACTERIUM; LAKE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RNA SEQUENCE; SEQUENCE HOMOLOGY; SULFUR BACTERIUM;

ANIMALS; BACTERIA; DNA, RIBOSOMAL; ECOSYSTEM; ELECTROPHORESIS; FLOW CYTOMETRY; FRESH WATER; IN SITU HYBRIDIZATION, FLUORESCENCE; MICROSCOPY, FLUORESCENCE; MOLECULAR SEQUENCE DATA; PLANKTON; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; VARIATION (GENETICS);

BACTERIA (MICROORGANISMS); BACTEROIDES; CHLOROBIUM; CHLOROBIUM PHAEOBACTEROIDES; CYTOPHAGA; CYTOPHAGA FERMENTANS; CYTOPHAGA SP.; ENVIRONMENTAL SEQUENCE; FLAVOBACTERIUM; NEGIBACTERIA; SYNECHOCOCCUS; SYNECHOCOCCUS SP.; THIOCYSTIS; THIOCYSTIS MINOR;

EID: 0036205618     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.4.1706-1714.2002     Document Type: Article

References (58)

1. Basic local alignment search tool
2. In situ visualization of high genetic diversity in a natural microbial community
3. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
4. Contribution of photosynthetic sulfur bacteria to the alkaline phosphatase activity in anoxic aquatic ecosystems
5. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
6. Molecular microbial diversity of an agricultural soil in Wisconsin
7. Composition and temporal dynamics of planktonic archaeal assemblages from anaerobic sulfurous environments studied by 16S rDNA denaturing gradient gel electrophoresis and sequencing
8. Comparison of pure cultures and natural assemblages of planktonic photosynthetic sulfur bacteria by low molecular mass RNA fingerprinting
9. Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: Comparison by microscopy and denaturing gradient gel electrophoresis
10. Diversity of cultivable and uncultivable oral spirochetes from a patient with severe destructive periodontitis
11. Archaea in coastal marine environments
12. Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing
13. Genetic diversity among Synechococcus spp. (cyanobacteria) isolated from the pelagial of Lake Constance
14. Niche adaptation in ocean cyanobacteria
15. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
16. Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
17. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
18. Microbial microdiversity
19. Novel major archaebacterial group from marine plankton
20. Genetic diversity in Sargasso Sea bacterioplankton
21. An in situ hybridization protocol for detection and identification of planktonic bacteria
22. Communities of phototrophic sulfur bacteria in lakes of the Spanish Mediterranean region
23. Phototrophic sulfur bacteria in two Spanish lakes: Vertical distribution and limiting factors
24. Physiological adaptation and growth of purple and green sulfur bacteria in a meromictic lake (Vilà) as compared to a holomictic lake (Sisó)
25. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
26. Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton
27. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment
28. Storage products in purple and green sulfur bacteria
29. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
30. Ecology and physiology of the competition between Chlorobium limicola and Chlorobium phaeobacteroides
31. Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
32. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
33. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
34. Structure, function, and dynamics of microbial communities: The molecular biological approach
35. Denaturing gradient gel electrophoresis (DGGE) in microbial ecology
36. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
37. PCR primers to amplify 16S rRNA genes from cyanobacteria
38. A molecular view of microbial diversity and the biosphere
39. The analysis of natural microbial populations by ribosomal RNA sequences
40. Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
41. Diversity of bacterioplankton
42. Microbial ecology in Lake Cisó
43. Mechanisms of dominance: Coexistence of picocyanobacterial genotypes in a freshwater ecosystem
44. Light causes selection among two phycoerythrin-rich Synechococcus isolates from Lake Constance
45. High genetic and physiological diversity of sulfate-reducing bacteria isolated from an oligotrophic lake sediment
46. High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis
47. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
48. Genetic diversity in Prochlorococcus populations flow cytometrically sorted from the Sargasso Sea and Gulf Stream
49. Coexistence of organisms competing for the same substrate: An example among the purple sulfur bacteria
50. Flow sorting of microorganisms for molecular analysis
51. A natural species concept for prokaryotes
52. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
53. 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides
54. Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides
55. Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean
56. Prokaryotes: The unseen majority
57. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
58. Bacterial evolution