Do neighboring lakes share common taxa of bacterioplankton? Comparison of 16S rDNA fingerprints and sequences from three geographic regions

Microbial Ecology

Volumn 44, Issue 1, 2002, Pages 1-9

  Lindstrom E S ^a   Leskinen, E ^b  

^a UPPSALA UNIVERSITY   (Sweden)

^b UNIVERSITY OF OULU   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPLANKTON; COMMUNITY COMPOSITION; DNA FINGERPRINTING; GEOGRAPHICAL VARIATION; INTERPOPULATION VARIATION; LAKE ECOSYSTEM;

EUROPE; SVALBARD AND JAN MAYEN;

ACTINOBACTERIA; NEGIBACTERIA; PROKARYOTA; PROTEOBACTERIA; UNCULTURED ALPHA PROTEOBACTERIUM;

FRESH WATER; RNA 16S;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; ANIMAL; ARTICLE; BACTERIAL GENE; CLASSIFICATION; DNA FINGERPRINTING; ECOSYSTEM; ELECTROPHORESIS; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PH; PHYLOGENY; RNA GENE; SCANDINAVIA;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; ANIMALS; DNA FINGERPRINTING; ECOSYSTEM; ELECTROPHORESIS; FRESH WATER; GENES, BACTERIAL; GENES, RRNA; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SCANDINAVIA;

EID: 0036635079     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-002-0007-6     Document Type: Article

References (31)

1. Bahr M, Hobbie JE, Sogin ML (1996) Bacterial diversity in an arctic lake: a freshwater SAR11 cluster. Aquat Microb Ecol 11:271-277
2. Blomqvist P, Jansson M, Drakare S, Bergström A-K, Brydsten L (2001) Effects of additions of DOC on pelagic biota in a clearwater system - results from a whole lake experiment in northern Sweden. Microb Ecol 42:383-394
3. Brunberg A-K, Blomqvist P (1998) Vatten i Uppsala län 1997. Rep. 8/1998, Upplandsstiftelsen
4. Casamayor EO, Schäfer H, Baneras L, Pedrós-Alió C, Muyzer G (2000) Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Appl Environ Microbiol 66:499-508
5. Glöckner FO, Amann R, Alfreider A, Pernthaler J, Psenner R, Trebesius K, Schleifer K-H (1996) An in situ hybridization protocol for detection and identification of planktonic bacteria. System Appl Microbiol 19:403-406
6. Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton composition of lakes and oceans: a first comparison based on fluorescence in situ hybridisation. Appl Environ Microbiol 65:3721-3726
7. Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A, Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl Environ Microbiol 66:5053-5065
8. Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8:189-191
9. Jansson M, Bergström A-K, Drakare S, Blomqvist P (2001) Nutrient limitation of bacterioplankton and phytoplankton in humic lakes in northern Sweden. Freshwat Biol 46:653-666
10. Kimura M (1980) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
11. Konopka A, Bercot T, Nakatsu C (1999) Bacterioplankton community diversity in a series of thermally stratified lakes. Microb Ecol 38:126-135
12. Kumar S, Tamura K, Nei M (1993) MEGA: Molecular evolutionary genetics analysis, version 1.01. The Pennsylvania State University, University Park, PA
13. Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA 82:6955-6959
14. Lindström ES (1998) Bacterioplankton community composition in a boreal forest lake. FEMS Microbiol Ecol 27:163-174
15. Lindström ES (2000) Bacterioplankton community composition in five lakes differing in trophic status and humic content. Microb Ecol 40:104-113
16. Lindström ES (2001) Investigating influential factors on bacterioplankton community composition - results from a field study of five mesotrophic lakes. Microb Ecol 42:598-605
17. Methé BA, Hiorns WD, Zehr JP (1998) Contrasts between marine and freshwater bacterial community composition: analyses of communities in Lake George and six other Adirondack lakes. Limnol Oceanogr 43:368-374
18. Methé BA, Zehr JP (1999) Diversity of bacterial communities in Adirondack lakes: do species assemblages reflect lake water chemistry? Hydrobiologia 401:77-96
19. Mullins TD, Britschgi TB, Krest RL, Giovannoni SJ (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol Oceanogr 40:148-158
20. Muyzer G, Smalla C (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73:127-141
21. Pinhassi J, Hagström Å (2000) Seasonal succession in marine bacterioplankton. Aquat Microb Ecol 21:245-256
22. Rappé MS, Vergin K, Giovannoni SJ (2000) Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol Ecol 33:219-232
23. Schauer M, Massana R, Pedrós-Alió C (2000) Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting. FEMS Microbiol Ecol 33:51-59
24. Simek K, Babenzien D, Bittl T, Koschel R, Macek M, Nedoma J, Vrba J (1998) Microbial food webs in an artificially divided acidic bog lake. Internat Rev Hydrobiol 83:3-18
25. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479-491
26. Swofford DL (1993) PAUP: Phylogenetic analysis using parsimony, Version 3.1. Computer program distributed by the Illinois Natural History Survey, Champaign, IL
27. Torsvik V, Daae FL, Sandaa R-A (1998) Novel techniques for analysing microbial diversity in natural and perturbed environments. J Biotechnol 64:53-62
28. Urbach E, Vergin KL, Young L, Morse A, Larson GL, Giovannoni SJ (2001) Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake. Limnol Oceanogr 46:557-572
29. Zwart G, Hiorns WD, Methé BA, van Agterveld MP, Huisman R, Nold SC, Zehr JP, Laanbroek HJ (1998) Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. System Appl Microbiol 21:546-556
30. Ørbæk JB, Svenøe T, Hessen DO (2001) Spectral properties and UV attenuation in Arctic freshwater systems. In: OD Hessen (ed) UV Radiation and Arctic Ecosystems. Ecological series 153. Springer Verlag, New York 57-72
31. Øvreås L, Forney L, Daae FL, Torsvik V (1997) Distribution of bacterioplankton in meromictic Lake Sælenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl Environ Microbiol 63:3367-3373