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Volumn 25, Issue 2, 1998, Pages 159-169

Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake

Author keywords

16S rRNA; Bacterial diversity; Denaturing gradient gel electrophoresis; Freshwater pelagic zone; Phylogeny; Prosthecobacter; Verrucomicrobium

Indexed keywords

BACTERIA; LAKE; SPECIES DIVERSITY; WATER COLUMN;

EID: 0031932022     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(97)00092-5     Document Type: Article
Times cited : (124)

References (44)
  • 2
    • 0018423107 scopus 로고
    • A tentative direct microscopic method for counting living marine bacteria
    • Kogure, K., Simidu, U. and Taga, N. (1979) A tentative direct microscopic method for counting living marine bacteria. Can. J. Microbiol. 25, 415-420.
    • (1979) Can. J. Microbiol. , vol.25 , pp. 415-420
    • Kogure, K.1    Simidu, U.2    Taga, N.3
  • 3
    • 0003101854 scopus 로고
    • The study of microorganisms in situ: Progress and problems
    • Fletcher, M., Gray, T.R. and Jones, J.G., Eds. Cambridge University Press, Cambridge
    • Brock, T.D. (1987) The study of microorganisms in situ: progress and problems. In: Symp. Soc. Gen. Microbiol. 41 (Fletcher, M., Gray, T.R. and Jones, J.G., Eds.), pp. 1-17. Cambridge University Press, Cambridge.
    • (1987) Symp. Soc. Gen. Microbiol. , vol.41 , pp. 1-17
    • Brock, T.D.1
  • 4
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D.M., Weller, R. and Bateson, M.M. (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345, 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 6
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C.R. (1987) Bacterial evolution. Microbiol. Rev. 51, 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 7
    • 0022083127 scopus 로고
    • Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences
    • Stahl, D.A., Lane, D.J., Olsen, G.J. and Pace, N.R. (1985) Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences. Appl. Environ. Microbiol. 49, 1379-1384.
    • (1985) Appl. Environ. Microbiol. , vol.49 , pp. 1379-1384
    • Stahl, D.A.1    Lane, D.J.2    Olsen, G.J.3    Pace, N.R.4
  • 8
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, N.R. (1997) A molecular view of microbial diversity and the biosphere. Science 276, 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 10
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M.T. and Giovannoni, S.J. (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62, 625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 12
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages
    • Delong, E.F., Franks, D.G. and Alldredge, A.L. (1993) Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages. Limnol. Oceanogr. 38, 924-934.
    • (1993) Limnol. Oceanogr. , vol.38 , pp. 924-934
    • Delong, E.F.1    Franks, D.G.2    Alldredge, A.L.3
  • 13
    • 0030619262 scopus 로고    scopus 로고
    • Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences
    • Fuhrman, J.A. and Davis, A.A. (1997) Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences. Mar. Ecol. Progr. Ser. 150, 275-285.
    • (1997) Mar. Ecol. Progr. Ser. , vol.150 , pp. 275-285
    • Fuhrman, J.A.1    Davis, A.A.2
  • 15
    • 0344970039 scopus 로고
    • Phosphorus dynamics following restoration measures in the Loosdrecht Lakes
    • The Netherlands
    • van Liere, L., Gulati, R.D., Wortelboer, F.G. and Lammens, E.H.R.R. (1990) Phosphorus dynamics following restoration measures in the Loosdrecht Lakes (The Netherlands). Hydrobiologia 191, 87-95.
    • (1990) Hydrobiologia , vol.191 , pp. 87-95
    • Van Liere, L.1    Gulati, R.D.2    Wortelboer, F.G.3    Lammens, E.H.R.R.4
  • 16
    • 0000998968 scopus 로고
    • The significance of wind resuspension for the predominance of filamentous cyanobacteria in a shallow, eutrophic lake
    • Gons, H.J., Otten, J.H. and Rijkeboer, M. (1991) The significance of wind resuspension for the predominance of filamentous cyanobacteria in a shallow, eutrophic lake. Mem. Ist. Ital. Idrobiol. 48, 233-249.
    • (1991) Mem. Ist. Ital. Idrobiol. , vol.48 , pp. 233-249
    • Gons, H.J.1    Otten, J.H.2    Rijkeboer, M.3
  • 17
    • 0018348464 scopus 로고
    • Length-independent separation of DNA restriction fragments in two dimensional gel electrophoresis
    • Fisher, S.G. and Lerman, L.S. (1979) Length-independent separation of DNA restriction fragments in two dimensional gel electrophoresis. Cell 16, 191-200.
    • (1979) Cell , vol.16 , pp. 191-200
    • Fisher, S.G.1    Lerman, L.S.2
  • 18
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W. and Stackebrandt, E. (1992) Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174, 5072-5078.
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 19
    • 0029584840 scopus 로고
    • Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria
    • Ward-Rainey, N., Rainey, F.A., Schlesner, H. and Stackebrandt, E. (1995) Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria. Microbiology 141, 3247-3250.
    • (1995) Microbiology , vol.141 , pp. 3247-3250
    • Ward-Rainey, N.1    Rainey, F.A.2    Schlesner, H.3    Stackebrandt, E.4
  • 20
    • 0029799964 scopus 로고    scopus 로고
    • Phylogeny of Prosthecobacter, the fusiform Caulobacters: Members of a recently discovered division of the Bacteria
    • Hedlund, B.P., Gosink, J.J. and Staley, J.T. (1996) Phylogeny of Prosthecobacter, the fusiform Caulobacters: members of a recently discovered division of the Bacteria. Int. J. Syst. Bacteriol. 46, 960-966.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 960-966
    • Hedlund, B.P.1    Gosink, J.J.2    Staley, J.T.3
  • 21
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt, E. and Goodfellow, M., Eds. John Wiley and Sons, Chichester
    • Lane, D.J. (1991) 16S/23S rRNA sequencing. In: Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt, E. and Goodfellow, M., Eds.), pp. 115-175. John Wiley and Sons, Chichester.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 22
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E.C. and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 25
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D.J. and Pearson, W.R. (1985) Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 26
    • 0023989064 scopus 로고
    • Improved tools for biological sequence analysis
    • Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence analysis. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 29
    • 0027732016 scopus 로고
    • DCSE v2.54, an interactive tool for sequence alignment and secondary structure research
    • De Rijk, P. and De Wachter, R. (1993) DCSE v2.54, an interactive tool for sequence alignment and secondary structure research. Comput. Appl. Biosci. 9, 735-740.
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 735-740
    • De Rijk, P.1    De Wachter, R.2
  • 30
    • 0028509254 scopus 로고
    • TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer, Y. and De Wachter, R. (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10, 569-570.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 569-570
    • Van de Peer, Y.1    De Wachter, R.2
  • 31
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro H.N., Ed. Academic Press, New York
    • Jukes, T.H. and Cantor, C.R. (1969) Evolution of protein molecules. In: Mammalian Protein Metabolism, Vol. 3 (Munro H.N., Ed.), pp. 21-132. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 32
    • 0025370148 scopus 로고
    • Small ribosomal subunit RNA sequences, evolutionary relationships among different life forms, and mitochondrial origins
    • Van de Peer, Y., Neefs, J.M. and De Wachter, R. (1990) Small ribosomal subunit RNA sequences, evolutionary relationships among different life forms, and mitochondrial origins. J. Mol. Evol. 30, 463-476.
    • (1990) J. Mol. Evol. , vol.30 , pp. 463-476
    • Van de Peer, Y.1    Neefs, J.M.2    De Wachter, R.3
  • 33
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 35
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., Kishino, H. and Yano, T. (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21, 160-174.
    • (1985) J. Mol. Evol. , vol.21 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 36
    • 0002378395 scopus 로고
    • Prokaryote systematics: The evolution of a science
    • Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds. Springer-Verlag, New York
    • Woese, C.R. (1992) Prokaryote systematics: The evolution of a science. In: The Prokaryotes, 2nd edn. (Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds.), pp. 3-18. Springer-Verlag, New York.
    • (1992) The Prokaryotes, 2nd Edn. , pp. 3-18
    • Woese, C.R.1
  • 37
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
    • Lee, S.-Y., Bollinger, J., Bezdicek, D. and Ogram, A. (1996) Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl. Environ. Microbiol. 62, 3787-3793.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3787-3793
    • Lee, S.-Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4
  • 38
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman, J. and Triplett, E.W. (1997) Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63, 2647-2653.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 39
    • 0030613347 scopus 로고    scopus 로고
    • Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: Confirmation of novel taxa
    • Wise, M.G., Mcarthur, J.V. and Shimkets, L.J. (1997) Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: confirmation of novel taxa. Appl. Environ. Microbiol. 63, 1505-1514.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1505-1514
    • Wise, M.G.1    McArthur, J.V.2    Shimkets, L.J.3
  • 40
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences
    • Hiorns, W.D., Methe, B.A., Nierzwickibauer, S.A. and Zehr, J.P. (1997) Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl. Environ. Microbiol. 63, 2957-2960.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methe, B.A.2    Nierzwickibauer, S.A.3    Zehr, J.P.4
  • 41
    • 0030613344 scopus 로고    scopus 로고
    • Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
    • Janssen, P.H., Schuhmann, A., Morschel, E. and Rainey, F.A. (1997) Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl. Environ. Microbiol. 63, 1382-1388.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1382-1388
    • Janssen, P.H.1    Schuhmann, A.2    Morschel, E.3    Rainey, F.A.4
  • 42
    • 51249171800 scopus 로고
    • Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria
    • Liesack, W., Weyland, H. and Stackebrandt, E. (1991) Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microb. Ecol. 21, 191-198.
    • (1991) Microb. Ecol. , vol.21 , pp. 191-198
    • Liesack, W.1    Weyland, H.2    Stackebrandt, E.3
  • 43
    • 0029972052 scopus 로고    scopus 로고
    • The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species
    • Wang, G.C.Y. and Wang, Y. (1996) The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species. Microbiology UK 142, 1107-1114.
    • (1996) Microbiology UK , vol.142 , pp. 1107-1114
    • Wang, G.C.Y.1    Wang, Y.2
  • 44
    • 0002783909 scopus 로고
    • The genus Verrucomicrobium
    • Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds. Springer-Verlag, New York
    • Schlesner, H. (1992) The genus Verrucomicrobium. In: The Prokaryotes, 2nd edn. (Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds.), pp. 3806-3808. Springer-Verlag, New York.
    • (1992) The Prokaryotes, 2nd Edn. , pp. 3806-3808
    • Schlesner, H.1


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