-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. L. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.L.7
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
3
-
-
0030011823
-
Molecular microbial diversity of an agricultural soil in Wisconsin
-
Borneman, J., P. W. Skroch, K. M. O'Sullivan, J. A. Palus, N. G. Rumjanek, J. L. Jansen, J. Nienhuis, and E. W. Triplett. 1996. Molecular microbial diversity of an agricultural soil in Wisconsin. Appl. Environ. Microbiol. 62:1935-1943.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1935-1943
-
-
Borneman, J.1
Skroch, P.W.2
O'Sullivan, K.M.3
Palus, J.A.4
Rumjanek, N.G.5
Jansen, J.L.6
Nienhuis, J.7
Triplett, E.W.8
-
4
-
-
0030860238
-
Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
-
Borneman, J., and E. W. Triplett. 1997. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63:2647-2653.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2647-2653
-
-
Borneman, J.1
Triplett, E.W.2
-
5
-
-
0031662637
-
Use of phospholipid fatty acids and carbon source utilization patterns to track microbial community succesion in developing compost
-
Carpenter-Boggs, L., A. C. Kennedy, and J. P. Reganold. 1998. Use of phospholipid fatty acids and carbon source utilization patterns to track microbial community succesion in developing compost. Appl. Environ. Microbiol. 64:4062-4064.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4062-4064
-
-
Carpenter-Boggs, L.1
Kennedy, A.C.2
Reganold, J.P.3
-
6
-
-
0021366558
-
Yellowstone magmatic evolution: Its bearing on understanding large-volume explosive volcanism
-
Geophysics Study Committee, Geophysics Research Forum, Commission on Physical Sciences, Mathematics, and Resources, National Research Council. National Academy Press, Washington, D.C.
-
Christiansen, R. L. 1984. Yellowstone magmatic evolution: its bearing on understanding large-volume explosive volcanism, p. 84-95. In Studies in geophysics. Explosive volcanism: inception, evolution and hazards. Geophysics Study Committee, Geophysics Research Forum, Commission on Physical Sciences, Mathematics, and Resources, National Research Council. National Academy Press, Washington, D.C.
-
(1984)
Studies in Geophysics. Explosive Volcanism: Inception, Evolution and Hazards
, pp. 84-95
-
-
Christiansen, R.L.1
-
7
-
-
0035075108
-
Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA
-
Dees, P. M., and W. C. Ghiorse. 2001. Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol. Ecol. 35:207-216.
-
(2001)
FEMS Microbiol. Ecol.
, vol.35
, pp. 207-216
-
-
Dees, P.M.1
Ghiorse, W.C.2
-
8
-
-
0032914126
-
Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
-
Dunbar, J., S. Takala, S. M. Barns, J. A. Davis, and C. R. Kuske. 1999. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65:1662-1669.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1662-1669
-
-
Dunbar, J.1
Takala, S.2
Barns, S.M.3
Davis, J.A.4
Kuske, C.R.5
-
9
-
-
0031909733
-
Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands)
-
Felske, A., A. Wolterink, R. van Lis, and A. D. L. Akkermans. 1998. Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl. Environ. Microbiol. 64:871-879.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 871-879
-
-
Felske, A.1
Wolterink, A.2
Van Lis, R.3
Akkermans, A.D.L.4
-
10
-
-
0030063913
-
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
-
Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62:340-346.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 340-346
-
-
Ferris, M.J.1
Muyzer, G.2
Ward, D.M.3
-
11
-
-
0024856989
-
Geochemistry and dynamics of the Yellowstone National Park system
-
Fournier, R. O. 1989. Geochemistry and dynamics of the Yellowstone National Park system. Annu. Rev. Earth Planet. Sci. 17:13-53.
-
(1989)
Annu. Rev. Earth Planet. Sci.
, vol.17
, pp. 13-53
-
-
Fournier, R.O.1
-
12
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180:4765-4774.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
13
-
-
0035212191
-
Molecular analysis of microbial community structure in an arsenite-oxidizing acidic thermal spring
-
Jackson, C. R., H. W. Langner, J. Donahoe-Christiansen, W. P. Inskeep, and T. R. McDermott. 2001. Molecular analysis of microbial community structure in an arsenite-oxidizing acidic thermal spring. Environ. Microbiol. 3:532-542.
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 532-542
-
-
Jackson, C.R.1
Langner, H.W.2
Donahoe-Christiansen, J.3
Inskeep, W.P.4
McDermott, T.R.5
-
14
-
-
0030868433
-
Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
-
Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3614-3621
-
-
Kuske, C.R.1
Barns, S.M.2
Busch, J.D.3
-
15
-
-
0343503030
-
Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
-
Lüdemann, H., I. Arth, and W. Liesack. 2000. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl. Environ. Microbiol. 66:754-762.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 754-762
-
-
Lüdemann, H.1
Arth, I.2
Liesack, W.3
-
16
-
-
0032916067
-
Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
-
McCaig, A. E., L. A. Glover, and J. I. Prosser. 1999. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 65:1721-1730.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1721-1730
-
-
McCaig, A.E.1
Glover, L.A.2
Prosser, J.I.3
-
17
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
18
-
-
0035064602
-
Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans
-
Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodinitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodinitrificans
-
Nazina, T. N., T. P. Tourova, A. B. Poltaraus, E. V. Novikova, A. A. Grígoryan, A. E. Ivanova, A. M. Lysenko, V. V. Petrunyaka, G. A. Osipov, S. S. Belyaev, and M. V. Ivanov. 2001. Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodinitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodinitrificans. Int. J. Syst. Evol. Microbiol. 51:433-446.
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 433-446
-
-
Nazina, T.N.1
Tourova, T.P.2
Poltaraus, A.B.3
Novikova, E.V.4
Grígoryan, A.A.5
Ivanova, A.E.6
Lysenko, A.M.7
Petrunyaka, V.V.8
Osipov, G.A.9
Belyaev, S.S.10
Ivanov, M.V.11
-
19
-
-
0035321749
-
Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of a polychlorinated biphenyl-polluted soil
-
Nogales, B., E. R. B. Moore, E. Llobet-Brossa, R. Rossello-Mora, R. Amann, and K. N. Timmis. 2001. Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of a polychlorinated biphenyl-polluted soil. Appl. Environ. Microbiol. 67:1874-1884.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1874-1884
-
-
Nogales, B.1
Moore, E.R.B.2
Llobet-Brossa, E.3
Rossello-Mora, R.4
Amann, R.5
Timmis, K.N.6
-
20
-
-
0036247129
-
The long-term effects of UV exclusion on the microbial composition and photosynthetic competence of bacteria in hot spring microbial mats
-
Norris, T. B., T. R. McDermott, and R. W. Castenholz. 2002. The long-term effects of UV exclusion on the microbial composition and photosynthetic competence of bacteria in hot spring microbial mats. FEMS Microbiol. Ecol. 39:193-209.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 193-209
-
-
Norris, T.B.1
McDermott, T.R.2
Castenholz, R.W.3
-
21
-
-
0029796310
-
Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
-
Nübel, U., B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R. I. Amann, W. Ludwig, and H. Backhaus. 1996. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178:5636-5643.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5636-5643
-
-
Nübel, U.1
Engelen, B.2
Felske, A.3
Snaidr, J.4
Wieshuber, A.5
Amann, R.I.6
Ludwig, W.7
Backhaus, H.8
-
22
-
-
0031867816
-
Microbial community changes in a perturbed agricultural soil investigated by molecular and physiological approaches
-
Øvreås, L., S. Jensen, F. L. Daae, and V. Torsvik. 1998. Microbial community changes in a perturbed agricultural soil investigated by molecular and physiological approaches. Appl. Environ. Microbiol. 64:2739-2742.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2739-2742
-
-
Øvreås, L.1
Jensen, S.2
Daae, F.L.3
Torsvik, V.4
-
23
-
-
0003482588
-
-
Soil Science Society of America, Madison, Wis.
-
Page, A. L., R. H. Miller, and D. R. Keeney. 1982. Methods of soil analysis, Part 2. Soil Science Society of America, Madison, Wis.
-
(1982)
Methods of Soil Analysis, Part 2
-
-
Page, A.L.1
Miller, R.H.2
Keeney, D.R.3
-
24
-
-
0034105806
-
Succession of microbial communities during hot composting as detected by PCR-single-stranded-conformation polymorphism-based genetic profiles of small-subunit rRNA genes
-
Peters, S., S. Koschinsky, F. Schwieger, and C. C. Tebbe. 2000. Succession of microbial communities during hot composting as detected by PCR-single-stranded-conformation polymorphism-based genetic profiles of small-subunit rRNA genes. Appl. Environ. Microbiol. 66:930-936.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 930-936
-
-
Peters, S.1
Koschinsky, S.2
Schwieger, F.3
Tebbe, C.C.4
-
25
-
-
0029759760
-
Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method
-
Purdy, K. J., T. M. Embley, S. Takii, and D. B. Nedwell. 1996. Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl. Environ. Microbiol. 62:3905-3907.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3905-3907
-
-
Purdy, K.J.1
Embley, T.M.2
Takii, S.3
Nedwell, D.B.4
-
26
-
-
0027405765
-
In vivo and in vitro footprinting of a light-regulated promoter in the cyanobacterium Fremyella diplosiphon
-
Schmidt-Goff, C. M., and N. A. Federspiel. 1993. In vivo and in vitro footprinting of a light-regulated promoter in the cyanobacterium Fremyella diplosiphon. J. Bacteriol. 175:1806-1813.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 1806-1813
-
-
Schmidt-Goff, C.M.1
Federspiel, N.A.2
-
27
-
-
0035344248
-
Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
-
Smit, E., P. Leeflang, S. Gommans, J. van den Broek, S. van Mil, and K. Wernars. 2001. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl. Environ. Microbiol. 67:2284-2291.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2284-2291
-
-
Smit, E.1
Leeflang, P.2
Gommans, S.3
Van den Broek, J.4
Van Mil, S.5
Wernars, K.6
-
28
-
-
0003986281
-
-
Soil Science Society of America, Madison, Wis.
-
Sparks, D. L., A. L. Page, P. A. Helmke, and R. H. Loeppert. 1996. Methods of soil analysis, part 3. Soil Science Society of America, Madison, Wis.
-
(1996)
Methods of Soil Analysis, Part 3
-
-
Sparks, D.L.1
Page, A.L.2
Helmke, P.A.3
Loeppert, R.H.4
-
29
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
30
-
-
0028091275
-
The regulation of ribosomal RNA synthesis and bacterial cell growth
-
Wagner, R. 1994. The regulation of ribosomal RNA synthesis and bacterial cell growth. Arch. Microbiol. 161:100-109.
-
(1994)
Arch. Microbiol.
, vol.161
, pp. 100-109
-
-
Wagner, R.1
-
31
-
-
0031436948
-
Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
-
Zhou, J., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology 143:3913-3919.
-
(1997)
Microbiology
, vol.143
, pp. 3913-3919
-
-
Zhou, J.1
Davey, M.E.2
Figueras, J.B.3
Rivkina, E.4
Gilichinsky, D.5
Tiedje, J.M.6
|