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Volumn 8, Issue , 2009, Pages

Bioreactor mixing efficiency modulates the activity of a prpoS::GFP reporter gene in E. coli

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN; SIGMA FACTOR RPOS;

EID: 62149119307     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/1475-2859-8-15     Document Type: Article
Times cited : (53)

References (55)
  • 1
    • 34548497149 scopus 로고    scopus 로고
    • The scale-up of microbial batch and fed-batch fermentation processes
    • 17869604
    • Hewitt CJ Nienow AW The scale-up of microbial batch and fed-batch fermentation processes Advances in applied microbiology 2007, 62:105-135 17869604
    • (2007) Advances in Applied Microbiology , vol.62 , pp. 105-135
    • Hewitt, C.J.1    Nienow, A.W.2
  • 3
    • 33846885651 scopus 로고    scopus 로고
    • Living with heterogeneities in bioreactors - Understanding the effects of environmental gradients on cells
    • 17284782
    • Lara AR Galindo E Ramirez OT Palomares LA Living with heterogeneities in bioreactors - Understanding the effects of environmental gradients on cells Molecular biotechnology 2006, 34:355-381 17284782
    • (2006) Molecular Biotechnology , vol.34 , pp. 355-381
    • Lara, A.R.1    Galindo, E.2    Ramirez, O.T.3    Palomares, L.A.4
  • 4
    • 33644655595 scopus 로고    scopus 로고
    • A methodology for the design of scale-down bioreactors by the use of mixing and circulation stochastic models
    • Delvigne F Destain J Thonart P A methodology for the design of scale-down bioreactors by the use of mixing and circulation stochastic models Biochemical engineering journal 2006, 28(3):256-268
    • (2006) Biochemical Engineering Journal , vol.28 , Issue.3 , pp. 256-268
    • Delvigne, F.1    Destain, J.2    Thonart, P.3
  • 5
    • 33646816768 scopus 로고    scopus 로고
    • Modeling the dynamics of E. coli populations in the three-dimensional turbulent field of a stirred bioreactor - A structured-segregated approach
    • Lapin A Schmid J Reuss M Modeling the dynamics of E. coli populations in the three-dimensional turbulent field of a stirred bioreactor - A structured-segregated approach Chemical engineering science 2006, 61:4783-4797
    • (2006) Chemical Engineering Science , vol.61 , pp. 4783-4797
    • Lapin, A.1    Schmid, J.2    Reuss, M.3
  • 6
    • 32444447282 scopus 로고    scopus 로고
    • Stochastic models to study the impact of mixing on a fed-batch culture of Saccharomyces cerevisiae
    • 16454518
    • Delvigne F Lejeune A Destain J Thonart P Stochastic models to study the impact of mixing on a fed-batch culture of Saccharomyces cerevisiae Biotechnology progress 2006, 22:259-269 16454518
    • (2006) Biotechnology Progress , vol.22 , pp. 259-269
    • Delvigne, F.1    Lejeune, A.2    Destain, J.3    Thonart, P.4
  • 7
    • 3543021486 scopus 로고    scopus 로고
    • Dynamic behavior of microbial populations in stirred bioreactors simulated with Euler-Lagrange methods: Traveling along the lifelines of single cells
    • Lapin A Müller D Reuss M Dynamic behavior of microbial populations in stirred bioreactors simulated with Euler-Lagrange methods: Traveling along the lifelines of single cells Industrial and engineering chemistry research 2004, 43:4647-4656
    • (2004) Industrial and Engineering Chemistry Research , vol.43 , pp. 4647-4656
    • Lapin, A.1    Müller, D.2    Reuss, M.3
  • 8
    • 0024620358 scopus 로고
    • Effects of reactant heterogeneity and mixing on catabolite repression in cultures of Saccharomyces cerevisiae
    • Fowler JD Dunlop EH Effects of reactant heterogeneity and mixing on catabolite repression in cultures of Saccharomyces cerevisiae Biotechnology and bioengineering 1989, 33:1039-1046
    • (1989) Biotechnology and Bioengineering , vol.33 , pp. 1039-1046
    • Fowler, J.D.1    Dunlop, E.H.2
  • 10
    • 33645580745 scopus 로고    scopus 로고
    • Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-down system
    • Lara AR Leal L Flores N Gosset G Bolivar F Ramirez OT Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-down system Biotechnology and bioengineering 2005, 93(2):372-385
    • (2005) Biotechnology and Bioengineering , vol.93 , Issue.2 , pp. 372-385
    • Lara, A.R.1    Leal, L.2    Flores, N.3    Gosset, G.4    Bolivar, F.5    Ramirez, O.T.6
  • 11
    • 14244251570 scopus 로고    scopus 로고
    • Culture of Escherichia coli under dissolved oxygen gradients simulated in a two-compartment scale-down system: Metabolic response and production of recombinant protein
    • Sandoval-Basurto EA Gosset G Bolivar F Ramirez OT Culture of Escherichia coli under dissolved oxygen gradients simulated in a two-compartment scale-down system: Metabolic response and production of recombinant protein Biotechnology and bioengineering 2004, 89(4):453-463
    • (2004) Biotechnology and Bioengineering , vol.89 , Issue.4 , pp. 453-463
    • Sandoval-Basurto, E.A.1    Gosset, G.2    Bolivar, F.3    Ramirez, O.T.4
  • 12
    • 0029329082 scopus 로고
    • Influence of substrate oscillations on acetate formation and growth yield in Escherichia coli glucose limited fed-batch cultivations
    • Neubauer P Häggström L Enfors SO Influence of substrate oscillations on acetate formation and growth yield in Escherichia coli glucose limited fed-batch cultivations Biotechnology and bioengineering 1995, 47:139-146
    • (1995) Biotechnology and Bioengineering , vol.47 , pp. 139-146
    • Neubauer, P.1    Häggström, L.2    Enfors, S.O.3
  • 13
    • 33846906037 scopus 로고    scopus 로고
    • A Comparison of High Cell Density Fed-Batch Fermentations Involving Both Induced and Non-Induced Recombinant Escherichia coli Under Well-Mixed Small-Scale and Simulated Poorly Mixed Large-Scale Conditions
    • Hewitt CJ Onyeaka H Lewis G Taylor IW Nienow AW A Comparison of High Cell Density Fed-Batch Fermentations Involving Both Induced and Non-Induced Recombinant Escherichia coli Under Well-Mixed Small-Scale and Simulated Poorly Mixed Large-Scale Conditions Biotechnology and bioengineering 2007, 96(3):495-505
    • (2007) Biotechnology and Bioengineering , vol.96 , Issue.3 , pp. 495-505
    • Hewitt, C.J.1    Onyeaka, H.2    Lewis, G.3    Taylor, I.W.4    Nienow, A.W.5
  • 14
    • 33747175397 scopus 로고    scopus 로고
    • Towards a stochastic formulation of the microbial growth in relation with the bioreactor performances: Case study of an E. coli fed-batch process
    • 16889388
    • Delvigne F Destain J Thonart P Towards a stochastic formulation of the microbial growth in relation with the bioreactor performances: Case study of an E. coli fed-batch process Biotechnology progress 2006, 22(4):1114-1124 16889388
    • (2006) Biotechnology Progress , vol.22 , Issue.4 , pp. 1114-1124
    • Delvigne, F.1    Destain, J.2    Thonart, P.3
  • 16
    • 0033062007 scopus 로고    scopus 로고
    • Glucose overflow metabolism and mixed-acid fermentation in aerobic large-scale fed-batch processes with Escherichia coli
    • Xu B Jahic M Blomsten G Enfors SO Glucose overflow metabolism and mixed-acid fermentation in aerobic large-scale fed-batch processes with Escherichia coli Applied microbiology and biotechnology 1999, 51:564-571
    • (1999) Applied Microbiology and Biotechnology , vol.51 , pp. 564-571
    • Xu, B.1    Jahic, M.2    Blomsten, G.3    Enfors, S.O.4
  • 17
    • 0033587372 scopus 로고    scopus 로고
    • Use of multi-staining flow cytometry to characterise the physiological state of Escherichia coli W3110 in high cell density fed-batch cultures
    • Hewitt CJ Nebe-Von Caron G Nienow AW Mc Farlane CM Use of multi-staining flow cytometry to characterise the physiological state of Escherichia coli W3110 in high cell density fed-batch cultures Biotechnology and bioengineering 1999, 63(6):705-711
    • (1999) Biotechnology and Bioengineering , vol.63 , Issue.6 , pp. 705-711
    • Hewitt, C.J.1    Nebe-Von Caron, G.2    Nienow, A.W.3    Mc Farlane, C.M.4
  • 18
    • 0034694211 scopus 로고    scopus 로고
    • Studies related to the scale-up of high-cell-density E. coli fed-batch fermentations using multiparameter flow cytometry: Effect of a changing microenvironment with respect to glucose and dissolved oxygen concentration
    • Hewitt CJ Nebe-Von Caron G Axelsson B Mc Farlane CM Nienow AW Studies related to the scale-up of high-cell-density E. coli fed-batch fermentations using multiparameter flow cytometry: Effect of a changing microenvironment with respect to glucose and dissolved oxygen concentration Biotechnology and bioengineering 2000, 70(4):381-390
    • (2000) Biotechnology and Bioengineering , vol.70 , Issue.4 , pp. 381-390
    • Hewitt, C.J.1    Nebe-Von Caron, G.2    Axelsson, B.3    Mc Farlane, C.M.4    Nienow, A.W.5
  • 19
    • 21644447627 scopus 로고    scopus 로고
    • Segregation to non-dividing cells in recombinant Escherichia coli fed-batch fermentation processes
    • 15604793
    • Sundstrom H Wallberg F Ledung E Norrman B Hewitt CJ Enfors SO Segregation to non-dividing cells in recombinant Escherichia coli fed-batch fermentation processes Biotechnology letters 2004, 26:1533-1539 15604793
    • (2004) Biotechnology Letters , vol.26 , pp. 1533-1539
    • Sundstrom, H.1    Wallberg, F.2    Ledung, E.3    Norrman, B.4    Hewitt, C.J.5    Enfors, S.O.6
  • 21
    • 0037104993 scopus 로고    scopus 로고
    • Stress and the single cell: Intrapopulation diversity is a mechanism to ensure survival upon exposure to stress
    • 12222634
    • Booth IR Stress and the single cell: Intrapopulation diversity is a mechanism to ensure survival upon exposure to stress International journal of food microbiology 2002, 78:19-30 12222634
    • (2002) International Journal of Food Microbiology , vol.78 , pp. 19-30
    • Booth, I.R.1
  • 24
    • 13244264814 scopus 로고    scopus 로고
    • Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach
    • 544888 15603590
    • Ma HW Buer J Zeng AP Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach BMC bioinformatics 2004, 5:199 544888 15603590
    • (2004) BMC Bioinformatics , vol.5 , pp. 199
    • Ma, H.W.1    Buer, J.2    Zeng, A.P.3
  • 25
    • 0036331056 scopus 로고    scopus 로고
    • DksA Affects ppGpp Induction of RpoS at a Translational Level
    • 135238 12142416
    • Brown L Gentry D Elliott T Cashel M DksA Affects ppGpp Induction of RpoS at a Translational Level Journal of bacteriology 2002, 184(16):4455-4465 135238 12142416
    • (2002) Journal of Bacteriology , vol.184 , Issue.16 , pp. 4455-4465
    • Brown, L.1    Gentry, D.2    Elliott, T.3    Cashel, M.4
  • 26
    • 0036183459 scopus 로고    scopus 로고
    • Fluorescent monitoring of cellular physiological status depending on the accumulation of ppGpp
    • Funabashi H Mie M Yanagida Y Kobatake E Aizawa M Fluorescent monitoring of cellular physiological status depending on the accumulation of ppGpp Biotechnology letters 2002, 24:269-273
    • (2002) Biotechnology Letters , vol.24 , pp. 269-273
    • Funabashi, H.1    Mie, M.2    Yanagida, Y.3    Kobatake, E.4    Aizawa, M.5
  • 27
    • 0037171596 scopus 로고    scopus 로고
    • Non-destructive monitoring of rpoS promoter activity as stress marker for evaluating cellular physiological status
    • 11879714
    • Funabashi H Haruyama T Mie M Yanagida Y Kobatake E Aizawa M Non-destructive monitoring of rpoS promoter activity as stress marker for evaluating cellular physiological status Journal of biotechnology 2002, 95(1):85-93 11879714
    • (2002) Journal of Biotechnology , vol.95 , Issue.1 , pp. 85-93
    • Funabashi, H.1    Haruyama, T.2    Mie, M.3    Yanagida, Y.4    Kobatake, E.5    Aizawa, M.6
  • 28
    • 60149104219 scopus 로고    scopus 로고
    • Microbial nar-GFP cell sensors reveal oxygen limitations in highly agitated and aerated laboratory-scale fermentors
    • 2630296 19146688
    • Garcia JR Cha HJ Rao GG Marten MR Bentley WE Microbial nar-GFP cell sensors reveal oxygen limitations in highly agitated and aerated laboratory-scale fermentors Microbial cell factories 2009, 8:6 2630296 19146688
    • (2009) Microbial Cell Factories , vol.8 , pp. 6
    • Garcia, J.R.1    Cha, H.J.2    Rao, G.G.3    Marten, M.R.4    Bentley, W.E.5
  • 29
    • 19544381068 scopus 로고    scopus 로고
    • Growing E. coli to high cell density - A historical perspective on method development
    • 15899573
    • Shiloach J Fass R Growing E. coli to high cell density - A historical perspective on method development Biotechnology advances 2005, 23:345-357 15899573
    • (2005) Biotechnology Advances , vol.23 , pp. 345-357
    • Shiloach, J.1    Fass, R.2
  • 30
    • 0029924025 scopus 로고    scopus 로고
    • Induction of RpoS-dependent functions in glucose-limited continuous culture: What level of nutrient limitation induces the stationary phase of Escherichia coli
    • 177823 8631726
    • Notley L Ferenci T Induction of RpoS-dependent functions in glucose-limited continuous culture: What level of nutrient limitation induces the stationary phase of Escherichia coli Journal of bacteriology 1996, 178(5):1465-1468 177823 8631726
    • (1996) Journal of Bacteriology , vol.178 , Issue.5 , pp. 1465-1468
    • Notley, L.1    Ferenci, T.2
  • 31
    • 0036181664 scopus 로고    scopus 로고
    • rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses
    • 139526 11790751
    • Notley-McRobb L King T Ferenci T rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses Journal of bacteriology 2002, 184(3):806-811 139526 11790751
    • (2002) Journal of Bacteriology , vol.184 , Issue.3 , pp. 806-811
    • Notley-McRobb, L.1    King, T.2    Ferenci, T.3
  • 32
    • 0029927276 scopus 로고    scopus 로고
    • Impact of plasmid presence and induction on cellular responses in fed batch cultures of Escherichia coli
    • 8672292
    • Andersson L Yang S Neubauer P Enfors SO Impact of plasmid presence and induction on cellular responses in fed batch cultures of Escherichia coli Journal of biotechnology 1996, 46:255-263 8672292
    • (1996) Journal of Biotechnology , vol.46 , pp. 255-263
    • Andersson, L.1    Yang, S.2    Neubauer, P.3    Enfors, S.O.4
  • 34
    • 0033527396 scopus 로고    scopus 로고
    • Monitoring GFP operon fusion protein expression during high cell density cultivation of Escherichia coli using an on-line optical sensor
    • 10440671
    • DeLisa MP Li J Rao G Weigand WA Bentley WE Monitoring GFP operon fusion protein expression during high cell density cultivation of Escherichia coli using an on-line optical sensor Biotechnology and bioengineering 1999, 65(1):54-64 10440671
    • (1999) Biotechnology and Bioengineering , vol.65 , Issue.1 , pp. 54-64
    • DeLisa, M.P.1    Li, J.2    Rao, G.3    Weigand, W.A.4    Bentley, W.E.5
  • 36
    • 37749024824 scopus 로고    scopus 로고
    • ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigma E in Escherichia coli by both direct and indirect mechanisms
    • Costanzo A Nicoloff H Barchinger SE Banta AB Gourse RL Ades SE ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigma E in Escherichia coli by both direct and indirect mechanisms Molecular microbiology 2008, 67(3):61-632
    • (2008) Molecular Microbiology , vol.67 , Issue.3 , pp. 61-632
    • Costanzo, A.1    Nicoloff, H.2    Barchinger, S.E.3    Banta, A.B.4    Gourse, R.L.5    Ades, S.E.6
  • 37
    • 9344261804 scopus 로고    scopus 로고
    • Stress and how bacteria cope with death and survival
    • 15646400
    • Aertsen A Michiels CW Stress and how bacteria cope with death and survival Critical reviews in microbiology 2004, 30:263-273 15646400
    • (2004) Critical Reviews in Microbiology , vol.30 , pp. 263-273
    • Aertsen, A.1    Michiels, C.W.2
  • 38
    • 0035209724 scopus 로고    scopus 로고
    • Hungry bacteria - Definition and properties of a nutritional state
    • 11722540
    • Ferenci T Hungry bacteria - definition and properties of a nutritional state Environmental microbiology 2001, 3(10):605-611 11722540
    • (2001) Environmental Microbiology , vol.3 , Issue.10 , pp. 605-611
    • Ferenci, T.1
  • 39
    • 0035203361 scopus 로고    scopus 로고
    • Viability of Escherichia coli cells under long-term cultivation in a rich nutrient medium
    • 11817642
    • Fukuda T Nakahigashi K Inokuchi H Viability of Escherichia coli cells under long-term cultivation in a rich nutrient medium Genes and genetic systems 2001, 76:271-278 11817642
    • (2001) Genes and Genetic Systems , vol.76 , pp. 271-278
    • Fukuda, T.1    Nakahigashi, K.2    Inokuchi, H.3
  • 40
    • 2942650309 scopus 로고    scopus 로고
    • Escherichia coli evolution during stationary phase
    • 15207864
    • Zinser ER Kolter R Escherichia coli evolution during stationary phase Research in microbiology 2004, 155:328-336 15207864
    • (2004) Research in Microbiology , vol.155 , pp. 328-336
    • Zinser, E.R.1    Kolter, R.2
  • 41
    • 0032984789 scopus 로고    scopus 로고
    • Growth rate related concentration changes of the starvation response regulators sigma S and ppGpp in glucose-limited fed-batch and continuous cultures of Escherichia coli
    • 9933522
    • Teich A Meyer S Lin HY Andersson L Enfors SO Neubauer P Growth rate related concentration changes of the starvation response regulators sigma S and ppGpp in glucose-limited fed-batch and continuous cultures of Escherichia coli Biotechnology progress 1999, 15:123-129 9933522
    • (1999) Biotechnology Progress , vol.15 , pp. 123-129
    • Teich, A.1    Meyer, S.2    Lin, H.Y.3    Andersson, L.4    Enfors, S.O.5    Neubauer, P.6
  • 42
    • 0028829643 scopus 로고
    • Response of guanosine tetraphosphate to glucose fluctuations in fed-batch cultivations of Escherichia coli
    • 8590645
    • Neubauer P Ahman M Törnkvist M Larsson G Enfors SO Response of guanosine tetraphosphate to glucose fluctuations in fed-batch cultivations of Escherichia coli Journal of biotechnology 1995, 43:195-204 8590645
    • (1995) Journal of Biotechnology , vol.43 , pp. 195-204
    • Neubauer, P.1    Ahman, M.2    Törnkvist, M.3    Larsson, G.4    Enfors, S.O.5
  • 44
    • 0037093379 scopus 로고    scopus 로고
    • Regulation of sigma factor competition by the alarmone ppGpp
    • 12023304
    • Jishage M Kvint K Shingler V Nyström T Regulation of sigma factor competition by the alarmone ppGpp Genes and development 2002, 16:1260-1270 12023304
    • (2002) Genes and Development , vol.16 , pp. 1260-1270
    • Jishage, M.1    Kvint, K.2    Shingler, V.3    Nyström, T.4
  • 45
    • 34447540221 scopus 로고    scopus 로고
    • Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli
    • 1951846 17496080
    • Magnusson LU Gummesson B Joksimovic P Farewell A Nyström T Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli Journal of bacteriology 2007, 189(14):5193-5202 1951846 17496080
    • (2007) Journal of Bacteriology , vol.189 , Issue.14 , pp. 5193-5202
    • Magnusson, L.U.1    Gummesson, B.2    Joksimovic, P.3    Farewell, A.4    Nyström, T.5
  • 46
    • 33748058888 scopus 로고    scopus 로고
    • Bistability in bacteria
    • 16879639
    • Dubnau D Losick R Bistability in bacteria Molecular microbiology 2006, 61(3):564-572 16879639
    • (2006) Molecular Microbiology , vol.61 , Issue.3 , pp. 564-572
    • Dubnau, D.1    Losick, R.2
  • 47
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: Theory and experimental approaches
    • 17510665
    • Alon U Network motifs: Theory and experimental approaches Nature 2007, 8:450-461 17510665
    • (2007) Nature , vol.8 , pp. 450-461
    • Alon, U.1
  • 48
    • 33645293152 scopus 로고    scopus 로고
    • An excitable gene regulatory circuit induces transient cellular differentiation
    • 16554821
    • Süel GM Garcia-Ojalvo J Liberman LM Elowitz MB An excitable gene regulatory circuit induces transient cellular differentiation Nature 2006, 440(23):545-550 16554821
    • (2006) Nature , vol.440 , Issue.23 , pp. 545-550
    • Süel, G.M.1    Garcia-Ojalvo, J.2    Liberman, L.M.3    Elowitz, M.B.4
  • 49
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • 11967538
    • Shen-Orr SS Milo R Manga S Alon U Network motifs in the transcriptional regulation network of Escherichia coli Nature genetics 2002, 31:64-68 11967538
    • (2002) Nature Genetics , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Manga, S.3    Alon, U.4
  • 50
    • 25444489027 scopus 로고    scopus 로고
    • Phenotypic diversity, population growth and information in fluctuating environments
    • 16123265
    • Kussell E Leibler S Phenotypic diversity, population growth and information in fluctuating environments Science 2005, 309:2075-2078 16123265
    • (2005) Science , vol.309 , pp. 2075-2078
    • Kussell, E.1    Leibler, S.2
  • 52
    • 0034646790 scopus 로고    scopus 로고
    • Influence of controlled glucose oscillations on a fed-batch process of recombinant Escherichia coli
    • 10817339
    • Lin HY Neubauer P Influence of controlled glucose oscillations on a fed-batch process of recombinant Escherichia coli Journal of biotechnology 2000, 79:27-37 10817339
    • (2000) Journal of Biotechnology , vol.79 , pp. 27-37
    • Lin, H.Y.1    Neubauer, P.2
  • 55
    • 0037186259 scopus 로고    scopus 로고
    • Flow cytometry as a useful tool for process development: Rapid evaluation of expression systems
    • 11755986
    • Patkar A Vijayasankaran N Urry DW Srienc F Flow cytometry as a useful tool for process development: Rapid evaluation of expression systems Journal of biotechnology 2002, 93:217-229 11755986
    • (2002) Journal of Biotechnology , vol.93 , pp. 217-229
    • Patkar, A.1    Vijayasankaran, N.2    Urry, D.W.3    Srienc, F.4


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