-
1
-
-
33749519037
-
NMR in the SPINE structural proteomics project
-
Ab E, Atkinson AR, Banci L, Bertini I, Ciofi-Baffoni S, Brunner K, Diercks T, Dötsch V, Engelke F, Folkers GE, Griesinger C, Gronwald W, Günther U, Habeck M, de Jong RN, Kalbitzer HR, Kieffer B, Leeflang BR, Loss S, Luchinat C, Marquardsen T, Moskau D, Neidig KP, Nilges M, Piccioli M, Pierattelli R, Rieping W, Schippmann T, Schwalbe H, Travé G, Trenner J, Wöhnert J, Zweckstetter M, Kaptein R (2006) NMR in the SPINE structural proteomics project. Acta Cryst Sect D 62:1150-1161
-
(2006)
Acta Cryst Sect D
, vol.62
, pp. 1150-1161
-
-
Ab, E.1
Atkinson, A.R.2
Banci, L.3
Bertini, I.4
Ciofi-Baffoni, S.5
Brunner, K.6
Diercks, T.7
Dötsch, V.8
Engelke, F.9
Folkers, G.E.10
Griesinger, C.11
Gronwald, W.12
Günther, U.13
Habeck, M.14
de Jong, R.N.15
Kalbitzer, H.R.16
Kieffer, B.17
Leeflang, B.R.18
Loss, S.19
Luchinat, C.20
Marquardsen, T.21
Moskau, D.22
Neidig, K.P.23
Nilges, M.24
Piccioli, M.25
Pierattelli, R.26
Rieping, W.27
Schippmann, T.28
Schwalbe, H.29
Travé, G.30
Trenner, J.31
Wöhnert, J.32
Zweckstetter, M.33
Kaptein, R.34
more..
-
2
-
-
0037349612
-
The southeast collaboratory for structural genomics: A high-throughput gene to structure factory
-
Adams MWW, Dailey HA, Delucas LJ, Luo M, Prestegard JH, Rose JP, Wang BC (2003) The southeast collaboratory for structural genomics: A high-throughput gene to structure factory. Accounts Chem Res 36:191-198
-
(2003)
Accounts Chem Res
, vol.36
, pp. 191-198
-
-
Adams, M.W.W.1
Dailey, H.A.2
Delucas, L.J.3
Luo, M.4
Prestegard, J.H.5
Rose, J.P.6
Wang, B.C.7
-
3
-
-
4744344737
-
Automation of NMR structure determination of proteins
-
Altieri AS, Byrd RA (2004) Automation of NMR structure determination of proteins. Curr Opin Struct Biol 14:547-553
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 547-553
-
-
Altieri, A.S.1
Byrd, R.A.2
-
4
-
-
35448929112
-
A large data set comparison of protein structures determined by crystallography and NMR: Statistical test for structural differences and the effect of crystal packing
-
Andrec M, Snyder DA, Zhou ZY, Young J, Montelione GT, Levy RM (2007) A large data set comparison of protein structures determined by crystallography and NMR: Statistical test for structural differences and the effect of crystal packing. Proteins: Struct Funct Bioinf 69:449-465
-
(2007)
Proteins: Struct Funct Bioinf
, vol.69
, pp. 449-465
-
-
Andrec, M.1
Snyder, D.A.2
Zhou, Z.Y.3
Young, J.4
Montelione, G.T.5
Levy, R.M.6
-
5
-
-
3042788977
-
G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment
-
Atreya HS, Szyperski T (2004) G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment. Proc Natl Acad Sci USA 101:9642-9647
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9642-9647
-
-
Atreya, H.S.1
Szyperski, T.2
-
7
-
-
0003007299
-
Exponential sampling, an alternative method for sampling in two-dimensional NMR experiments
-
Barna JCJ, Laue ED, Mayger MR, Skilling J, Worrall SJP (1987) Exponential sampling, an alternative method for sampling in two-dimensional NMR experiments. J Magn Reson 73:69-77
-
(1987)
J Magn Reson
, vol.73
, pp. 69-77
-
-
Barna, J.C.J.1
Laue, E.D.2
Mayger, M.R.3
Skilling, J.4
Worrall, S.J.P.5
-
8
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
-
Bartels C, Xia TH, Billeter M, Güntert P, Wüthrich K (1995) The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J Biomol NMR 6:1-10
-
(1995)
J Biomol NMR
, vol.6
, pp. 1-10
-
-
Bartels, C.1
Xia, T.H.2
Billeter, M.3
Güntert, P.4
Wüthrich, K.5
-
9
-
-
0000441606
-
GARANT - A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra
-
Bartels C, Güntert P, Billeter M, Wüthrich K (1997) GARANT - A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J Comp Chem 18:139-149
-
(1997)
J Comp Chem
, vol.18
, pp. 139-149
-
-
Bartels, C.1
Güntert, P.2
Billeter, M.3
Wüthrich, K.4
-
11
-
-
55649119346
-
Solution NMR determination of proteins revisited
-
Billeter M, Wagner G, Wüthrich K (2008) Solution NMR determination of proteins revisited. J Biomol NMR 42:155-158
-
(2008)
J Biomol NMR
, vol.42
, pp. 155-158
-
-
Billeter, M.1
Wagner, G.2
Wüthrich, K.3
-
12
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Cryst D 54:905-921
-
(1998)
Acta Cryst D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
13
-
-
0033757822
-
An overview of structural genomics
-
Burley SK (2000) An overview of structural genomics. Nature Struct Biol 7:932-934
-
(2000)
Nature Struct Biol
, vol.7
, pp. 932-934
-
-
Burley, S.K.1
-
14
-
-
31144467558
-
The impact of structural genomics: Expectations and outcomes
-
Chandonia JM, Brenner SE (2006) The impact of structural genomics: expectations and outcomes. Science 311:347-351
-
(2006)
Science
, vol.311
, pp. 347-351
-
-
Chandonia, J.M.1
Brenner, S.E.2
-
15
-
-
8844222708
-
TargetDB: A target registration database for structural genomics projects
-
Chen L, Oughtred R, Berman HM, Westbrook J (2004) TargetDB: A target registration database for structural genomics projects. Bioinformatics 20:2860-2862
-
(2004)
Bioinformatics
, vol.20
, pp. 2860-2862
-
-
Chen, L.1
Oughtred, R.2
Berman, H.M.3
Westbrook, J.4
-
16
-
-
0033785799
-
Structural proteomics of an archaeon
-
Christendat D, Yee A, Dharamsi A, Kluger Y, Savchenko A, Cort JR, Booth V, Mackereth CD, Saridakis V, Ekiel I, Kozlov G, Maxwell KL, Wu N, McIntosh LP, Gehring K, Kennedy MA, Davidson AR, Pai EF, Gerstein M, Edwards AM, Arrowsmith CH (2000) Structural proteomics of an archaeon. Nature Struct Biol 7:903-909
-
(2000)
Nature Struct Biol
, vol.7
, pp. 903-909
-
-
Christendat, D.1
Yee, A.2
Dharamsi, A.3
Kluger, Y.4
Savchenko, A.5
Cort, J.R.6
Booth, V.7
Mackereth, C.D.8
Saridakis, V.9
Ekiel, I.10
Kozlov, G.11
Maxwell, K.L.12
Wu, N.13
McIntosh, L.P.14
Gehring, K.15
Kennedy, M.A.16
Davidson, A.R.17
Pai, E.F.18
Gerstein, M.19
Edwards, A.M.20
Arrowsmith, C.H.21
more..
-
17
-
-
33749159694
-
'Big science' protein project under fire
-
Cyranoski D (2006) 'Big science' protein project under fire. Nature 443:382
-
(2006)
Nature
, vol.443
, pp. 382
-
-
Cyranoski, D.1
-
18
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on Unix pipe
-
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: A multidimensional spectral processing system based on Unix pipe. J Biomol NMR 6:277-293
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
20
-
-
19944364336
-
Influence of chemical shift tolerances on NMR structure calculations using ARIA protocols for assigning NOE data
-
Fossi M, Linge J, Labudde D, Leitner D, Nilges M, Oschkinat H (2005a) Influence of chemical shift tolerances on NMR structure calculations using ARIA protocols for assigning NOE data. J Biomol NMR 31:21-34
-
(2005)
J Biomol NMR
, vol.31
, pp. 21-34
-
-
Fossi, M.1
Linge, J.2
Labudde, D.3
Leitner, D.4
Nilges, M.5
Oschkinat, H.6
-
21
-
-
19944407188
-
Quantitative study of the effects of chemical shift tolerances and rates of SA cooling on structure calculation from automatically assigned NOE data
-
Fossi M, Oschkinat H, Nilges M, Ball LJ (2005b) Quantitative study of the effects of chemical shift tolerances and rates of SA cooling on structure calculation from automatically assigned NOE data. J Magn Reson 175:92-102
-
(2005)
J Magn Reson
, vol.175
, pp. 92-102
-
-
Fossi, M.1
Oschkinat, H.2
Nilges, M.3
Ball, L.J.4
-
22
-
-
38749142906
-
Protein production and purification
-
Gräslund S, Nordlund P, Weigelt J, Bray J, Hallberg BM, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, Dhe-Paganon S, Park HW, Savchenko A, Yee A, Edwards A, Vincentelli R, Cambillau C, Kim R, Kim SH, Rao Z, Shi Y, Terwilliger TC, Kim CY, Hung LW, Waldo GS, Peleg Y, Albeck S, Unger T, Dym O, Prilusky J, Sussman JL, Stevens RC, Lesley SA, Wilson IA, Joachimiak A, Collart F, Dementieva I, Donnelly MI, Eschenfeldt WH, Kim Y, Stols L, Wu R, Zhou M, Burley SK, Emtage JS, Sauder JM, Thompson D, Bain K, Luz J, Gheyi T, Zhang F, Atwell S, Almo SC, Bonanno JB, Fiser A, Swaminathan S, Studier FW, Chance MR, Sali A, Acton TB, Xiao R, Zhao L, Ma LC, Hunt JF, Tong L, Cunningham K, Inouye M, Anderson S, Janjua H, Shastry R, Ho CK, Wang DY, Wang H, Jiang M, Montelione GT, Stuart DI, Owens RJ, Daenke S, Schütz A, Heinemann U, Yokoyama S, Büssow K, Gunsalus KC (2008) Protein production and purification. Nature Methods 5:135-146
-
(2008)
Nature Methods
, vol.5
, pp. 135-146
-
-
Gräslund, S.1
Nordlund, P.2
Weigelt, J.3
Bray, J.4
Hallberg, B.M.5
Gileadi, O.6
Knapp, S.7
Oppermann, U.8
Arrowsmith, C.9
Hui, R.10
Ming, J.11
Dhe-Paganon, S.12
Park, H.W.13
Savchenko, A.14
Yee, A.15
Edwards, A.16
Vincentelli, R.17
Cambillau, C.18
Kim, R.19
Kim, S.H.20
Rao, Z.21
Shi, Y.22
Terwilliger, T.C.23
Kim, C.Y.24
Hung, L.W.25
Waldo, G.S.26
Peleg, Y.27
Albeck, S.28
Unger, T.29
Dym, O.30
Prilusky, J.31
Sussman, J.L.32
Stevens, R.C.33
Lesley, S.A.34
Wilson, I.A.35
Joachimiak, A.36
Collart, F.37
Dementieva, I.38
Donnelly, M.I.39
Eschenfeldt, W.H.40
Kim, Y.41
Stols, L.42
Wu, R.43
Zhou, M.44
Burley, S.K.45
Emtage, J.S.46
Sauder, J.M.47
Thompson, D.48
Bain, K.49
Luz, J.50
Gheyi, T.51
Zhang, F.52
Atwell, S.53
Almo, S.C.54
Bonanno, J.B.55
Fiser, A.56
Swaminathan, S.57
Studier, F.W.58
Chance, M.R.59
Sali, A.60
Acton, T.B.61
Xiao, R.62
Zhao, L.63
Ma, L.C.64
Hunt, J.F.65
Tong, L.66
Cunningham, K.67
Inouye, M.68
Anderson, S.69
Janjua, H.70
Shastry, R.71
Ho, C.K.72
Wang, D.Y.73
Wang, H.74
Jiang, M.75
Montelione, G.T.76
Stuart, D.I.77
Owens, R.J.78
Daenke, S.79
Schütz, A.80
Heinemann, U.81
Yokoyama, S.82
Büssow, K.83
Gunsalus, K.C.84
more..
-
23
-
-
0037076277
-
CLOUDS, a protocol for deriving a molecular proton density via NMR
-
Grishaev A, Llinás M (2002) CLOUDS, a protocol for deriving a molecular proton density via NMR. Proc Natl Acad Sci USA 99:6707-6712
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6707-6712
-
-
Grishaev, A.1
Llinás, M.2
-
24
-
-
24344445864
-
ABACUS, a direct method for protein NMR structure computation via assembly of fragments
-
Grishaev A, Steren CA, Wu B, Pineda-Lucena A, Arrowsmith C, Llinás M (2005) ABACUS, a direct method for protein NMR structure computation via assembly of fragments. Proteins: Struct Funct Bioinf 61:36-43
-
(2005)
Proteins: Struct Funct Bioinf
, vol.61
, pp. 36-43
-
-
Grishaev, A.1
Steren, C.A.2
Wu, B.3
Pineda-Lucena, A.4
Arrowsmith, C.5
Llinás, M.6
-
25
-
-
1842486886
-
Automated structure determination of proteins by NMR spectroscopy
-
Gronwald W, Kalbitzer HR (2004) Automated structure determination of proteins by NMR spectroscopy. Progr Nucl Magn Reson Spectrosc 44:33-96
-
(2004)
Progr Nucl Magn Reson Spectrosc
, vol.44
, pp. 33-96
-
-
Gronwald, W.1
Kalbitzer, H.R.2
-
26
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Güntert P, Mumenthaler C, Wüthrich K (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 273:283-298
-
(1997)
J Mol Biol
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
27
-
-
4344698912
-
Automated NMR protein structure calculation
-
Güntert P (2003) Automated NMR protein structure calculation. Progr NMR Spectrosc 43:105-125
-
(2003)
Progr NMR Spectrosc
, vol.43
, pp. 105-125
-
-
Güntert, P.1
-
28
-
-
58849162221
-
Automated structure determination from NMR spectra
-
(in press)
-
Güntert P (2008) Automated structure determination from NMR spectra. Eur Biophys J 38 (in press)
-
(2008)
Eur Biophys J
, vol.38
-
-
Güntert, P.1
-
29
-
-
0033757915
-
Structural genomics in Europe: Slow start, strong finish?
-
Heinemann U (2000) Structural genomics in Europe: Slow start, strong finish? Nature Struct Biol 7:940-942
-
(2000)
Nature Struct Biol
, vol.7
, pp. 940-942
-
-
Heinemann, U.1
-
30
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
Herrmann T, Güntert P, Wüthrich K (2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol 319:209-227
-
(2002)
J Mol Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
31
-
-
34848903007
-
Sequence-specific resonance assignment of soluble nonglobular proteins by 7D APSY-NMR Spectroscopy
-
Hiller S, Wasmer C, Wider G, Wüthrich K (2007) Sequence-specific resonance assignment of soluble nonglobular proteins by 7D APSY-NMR Spectroscopy. J Am Chem Soc 129:10823-10828
-
(2007)
J Am Chem Soc
, vol.129
, pp. 10823-10828
-
-
Hiller, S.1
Wasmer, C.2
Wider, G.3
Wüthrich, K.4
-
32
-
-
0037266406
-
MONTE: An automated Monte Carlo based approach to nuclear magnetic resonance assignment of proteins
-
Hitchens TK, Lukin JA, Zhan YP, McCallum SA, Rule GS (2003) MONTE: An automated Monte Carlo based approach to nuclear magnetic resonance assignment of proteins. J Biomol NMR 25:1-9
-
(2003)
J Biomol NMR
, vol.25
, pp. 1-9
-
-
Hitchens, T.K.1
Lukin, J.A.2
Zhan, Y.P.3
McCallum, S.A.4
Rule, G.S.5
-
33
-
-
16244377434
-
An integrated platform for automated analysis of protein NMR structures
-
Huang YPJ, Moseley HNB, Baran MC, Arrowsmith C, Powers R, Tejero R, Szyperski T, Montelione GT (2005) An integrated platform for automated analysis of protein NMR structures. Methods Enzymol 394:111-141
-
(2005)
Methods Enzymol
, vol.394
, pp. 111-141
-
-
Huang, Y.P.J.1
Moseley, H.N.B.2
Baran, M.C.3
Arrowsmith, C.4
Powers, R.5
Tejero, R.6
Szyperski, T.7
Montelione, G.T.8
-
34
-
-
34548484836
-
Perspectives of biomolecular NMR in drug discovery: The blessing and curse of versatility
-
Jahnke W (2007) Perspectives of biomolecular NMR in drug discovery: The blessing and curse of versatility. J Biomol NMR 39:87-90
-
(2007)
J Biomol NMR
, vol.39
, pp. 87-90
-
-
Jahnke, W.1
-
35
-
-
0242355012
-
Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment
-
Jee J, Güntert P (2003) Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment. J Struct Funct Genomics 4:179-189
-
(2003)
J Struct Funct Genomics
, vol.4
, pp. 179-189
-
-
Jee, J.1
Güntert, P.2
-
36
-
-
34249765651
-
NMRView: A computer program for the visualization and analysis of NMR data
-
Johnson BA, Blevins RA (1994) NMRView: A computer program for the visualization and analysis of NMR data. J Biomol NMR 4:603-614
-
(1994)
J Biomol NMR
, vol.4
, pp. 603-614
-
-
Johnson, B.A.1
Blevins, R.A.2
-
37
-
-
32144464187
-
An efficient randomized algorithm for contact-based NMR backbone resonance assignment
-
Kamisetty H, Bailey-Kellogg C, Pandurangan G (2006) An efficient randomized algorithm for contact-based NMR backbone resonance assignment. Bioinformatics 22:172-180
-
(2006)
Bioinformatics
, vol.22
, pp. 172-180
-
-
Kamisetty, H.1
Bailey-Kellogg, C.2
Pandurangan, G.3
-
38
-
-
34547923673
-
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies
-
Kobayashi N, Iwahara J, Koshiba S, Tomizawa T, Tochio N, Güntert P, Kigawa T, Yokoyama S (2007) KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies. J Biomol NMR 39:31-52
-
(2007)
J Biomol NMR
, vol.39
, pp. 31-52
-
-
Kobayashi, N.1
Iwahara, J.2
Koshiba, S.3
Tomizawa, T.4
Tochio, N.5
Güntert, P.6
Kigawa, T.7
Yokoyama, S.8
-
39
-
-
34247187326
-
Fast high-resolution protein structure determination by using unassigned NMR data
-
Korukottu J, Bayrhuber M, Montaville P, Vijayan V, Jung YS, Becker S, Zweckstetter M (2007) Fast high-resolution protein structure determination by using unassigned NMR data. Angewandte Chemie Int Ed 46:1176-1179
-
(2007)
Angewandte Chemie Int Ed
, vol.46
, pp. 1176-1179
-
-
Korukottu, J.1
Bayrhuber, M.2
Montaville, P.3
Vijayan, V.4
Jung, Y.S.5
Becker, S.6
Zweckstetter, M.7
-
40
-
-
2442687868
-
Projection-reconstruction technique for speeding up multidimensional NMR spectroscopy
-
Kupěe E, Freeman R (2004) Projection-reconstruction technique for speeding up multidimensional NMR spectroscopy. J Am Chem Soc 126:6429-6440
-
(2004)
J Am Chem Soc
, vol.126
, pp. 6429-6440
-
-
Kupěe, E.1
Freeman, R.2
-
41
-
-
2442717620
-
Completely automated, highly error-tolerant macromolecular structure determination from multidimensional nuclear Overhauser enhancement spectra and chemical shift assignments
-
Kuszewski J, Schwieters CD, Garrett DS, Byrd RA, Tjandra N, Clore GM (2004) Completely automated, highly error-tolerant macromolecular structure determination from multidimensional nuclear Overhauser enhancement spectra and chemical shift assignments. J Am Chem Soc 126:6258-6273
-
(2004)
J Am Chem Soc
, vol.126
, pp. 6258-6273
-
-
Kuszewski, J.1
Schwieters, C.D.2
Garrett, D.S.3
Byrd, R.A.4
Tjandra, N.5
Clore, G.M.6
-
42
-
-
50449105226
-
Automated error-tolerant macromolecular structure determination from multidimensional nuclear Overhauser enhancement spectra and chemical shift assignments: Improved robustness and performance of the PASD algorithm
-
Kuszewski JJ, Thottungal RA, Clore GM, Schwieters CD (2008) Automated error-tolerant macromolecular structure determination from multidimensional nuclear Overhauser enhancement spectra and chemical shift assignments: Improved robustness and performance of the PASD algorithm. J Biomol NMR 41:221-239
-
(2008)
J Biomol NMR
, vol.41
, pp. 221-239
-
-
Kuszewski, J.J.1
Thottungal, R.A.2
Clore, G.M.3
Schwieters, C.D.4
-
43
-
-
33847616971
-
Growth of novel protein structural data
-
Levitt M (2007) Growth of novel protein structural data. Proc Natl Acad Sci USA 104:3183-3188
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 3183-3188
-
-
Levitt, M.1
-
44
-
-
0037316363
-
ARIA: Automated NOE assignment and NMR structure calculation
-
Linge JP, Habeck M, Rieping W, Nilges M (2003a) ARIA: Automated NOE assignment and NMR structure calculation. Bioinformatics 19:315-316
-
(2003)
Bioinformatics
, vol.19
, pp. 315-316
-
-
Linge, J.P.1
Habeck, M.2
Rieping, W.3
Nilges, M.4
-
45
-
-
0037441524
-
Refinement of protein structures in explicit solvent
-
Linge JP, Williams MA, Spronk CAEM, Bonvin AMJJ, Nilges M (2003b) Refinement of protein structures in explicit solvent. Proteins: Struct Funct Bioinf 50:496-506
-
(2003)
Proteins: Struct Funct Bioinf
, vol.50
, pp. 496-506
-
-
Linge, J.P.1
Williams, M.A.2
Spronk, C.A.E.M.3
Bonvin, A.M.J.J.4
Nilges, M.5
-
46
-
-
23044509110
-
NMR data collection and analysis protocol for high-throughput protein structure determination
-
Liu GH, Shen Y, Atreya HS, Parish D, Shao Y, Sukumaran DK, Xiao R, Yee A, Lemak A, Bhattacharya A, Acton TA, Arrowsmith CH, Montelione GT, Szyperski T (2005) NMR data collection and analysis protocol for high-throughput protein structure determination. Proc Natl Acad Sci USA 102:10487-10492
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10487-10492
-
-
Liu, G.H.1
Shen, Y.2
Atreya, H.S.3
Parish, D.4
Shao, Y.5
Sukumaran, D.K.6
Xiao, R.7
Yee, A.8
Lemak, A.9
Bhattacharya, A.10
Acton, T.A.11
Arrowsmith, C.H.12
Montelione, G.T.13
Szyperski, T.14
-
47
-
-
33749524593
-
Automated protein structure determination from NMR spectra
-
López-Méndez B, Güntert P (2006) Automated protein structure determination from NMR spectra. J Am Chem Soc 128:13112-13122
-
(2006)
J Am Chem Soc
, vol.128
, pp. 13112-13122
-
-
López-Méndez, B.1
Güntert, P.2
-
48
-
-
0043027070
-
Fully automated sequence-specific resonance assignments of heteronuclear protein spectra
-
Malmodin D, Papavoine CHM, Billeter M (2003) Fully automated sequence-specific resonance assignments of heteronuclear protein spectra. J Biomol NMR 27:69-79
-
(2003)
J Biomol NMR
, vol.27
, pp. 69-79
-
-
Malmodin, D.1
Papavoine, C.H.M.2
Billeter, M.3
-
49
-
-
19944411144
-
High-throughput analysis of protein NMR spectra
-
Malmodin D, Billeter M (2005) High-throughput analysis of protein NMR spectra. Progr NMR Spectrosc 46:109-129
-
(2005)
Progr NMR Spectrosc
, vol.46
, pp. 109-129
-
-
Malmodin, D.1
Billeter, M.2
-
51
-
-
0346103679
-
Rapid protein fold determination using unassigned NMR data
-
Meiler J, Baker D (2003) Rapid protein fold determination using unassigned NMR data. Proc Natl Acad Sci USA 100:15404-15409
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15404-15409
-
-
Meiler, J.1
Baker, D.2
-
52
-
-
0034923123
-
Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data
-
Moseley HNB, Monleon D, Montelione GT (2001) Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data. Methods Enzymol 339:91-108
-
(2001)
Methods Enzymol
, vol.339
, pp. 91-108
-
-
Moseley, H.N.B.1
Monleon, D.2
Montelione, G.T.3
-
53
-
-
4544269370
-
A generalized approach to automated NMR peak list editing: Application to reduced dimensionality triple resonance spectra
-
Moseley HNB, Riaz N, Aramini JM, Szyperski T, Montelione GT (2004a) A generalized approach to automated NMR peak list editing: Application to reduced dimensionality triple resonance spectra. J Magn Reson 170:263-277
-
(2004)
J Magn Reson
, vol.170
, pp. 263-277
-
-
Moseley, H.N.B.1
Riaz, N.2
Aramini, J.M.3
Szyperski, T.4
Montelione, G.T.5
-
54
-
-
1442306656
-
Assignment validation software suite for the evaluation and presentation of protein resonance assignment data
-
Moseley HNB, Sahota G, Montelione GT (2004b) Assignment validation software suite for the evaluation and presentation of protein resonance assignment data. J Biomol NMR 28:341-355
-
(2004)
J Biomol NMR
, vol.28
, pp. 341-355
-
-
Moseley, H.N.B.1
Sahota, G.2
Montelione, G.T.3
-
55
-
-
2442610955
-
DRESS: A database of REfined solution NMR structures
-
Nabuurs SB, Nederveen AJ, Vranken W, Doreleijers JF, Bonvin AMJJ, Vuister GW, Vriend G, Spronk CAEM (2004) DRESS: A database of REfined solution NMR structures. Proteins: Struct Funct Bioinf 55:483-486
-
(2004)
Proteins: Struct Funct Bioinf
, vol.55
, pp. 483-486
-
-
Nabuurs, S.B.1
Nederveen, A.J.2
Vranken, W.3
Doreleijers, J.F.4
Bonvin, A.M.J.J.5
Vuister, G.W.6
Vriend, G.7
Spronk, C.A.E.M.8
-
56
-
-
21044449889
-
RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
-
Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CAEM, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AMJJ (2005) RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins: Struct Funct Bioinf 59:662-672
-
(2005)
Proteins: Struct Funct Bioinf
, vol.59
, pp. 662-672
-
-
Nederveen, A.J.1
Doreleijers, J.F.2
Vranken, W.3
Miller, Z.4
Spronk, C.A.E.M.5
Nabuurs, S.B.6
Güntert, P.7
Livny, M.8
Markley, J.L.9
Nilges, M.10
Ulrich, E.L.11
Kaptein, R.12
Bonvin, A.M.J.J.13
-
57
-
-
0028907436
-
Calculation of protein structures with ambiguous distance restraints: Automated assignment of ambiguous NOE crosspeaks and disulfide connectivities
-
Nilges M (1995) Calculation of protein structures with ambiguous distance restraints: Automated assignment of ambiguous NOE crosspeaks and disulfide connectivities. J Mol Biol 245:645-660
-
(1995)
J Mol Biol
, vol.245
, pp. 645-660
-
-
Nilges, M.1
-
58
-
-
0347988396
-
Ambiguous NOEs and automated NOE assignment
-
Nilges M, O'Donoghue SI (1998) Ambiguous NOEs and automated NOE assignment. Progr NMR Spectrosc 32:107-139
-
(1998)
Progr NMR Spectrosc
, vol.32
, pp. 107-139
-
-
Nilges, M.1
O'Donoghue, S.I.2
-
59
-
-
15844424159
-
APART: Automated preprocessing for NMR assignments with reduced tedium
-
Pawley NH, Gans JD, Michalczyk R (2005) APART: Automated preprocessing for NMR assignments with reduced tedium. Bioinformatics 21:680-682
-
(2005)
Bioinformatics
, vol.21
, pp. 680-682
-
-
Pawley, N.H.1
Gans, J.D.2
Michalczyk, R.3
-
60
-
-
62949126043
-
Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study
-
(in press)
-
Ramelot TA, Raman S, Kuzin AP, Xiao R, Ma LC, Acton TB, Hunt JF, Montelione GT, Baker D, Kennedy MA (2009) Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study. Proteins: Struct Funct Bioinf (in press)
-
(2009)
Proteins: Struct Funct Bioinf
-
-
Ramelot, T.A.1
Raman, S.2
Kuzin, A.P.3
Xiao, R.4
Ma, L.C.5
Acton, T.B.6
Hunt, J.F.7
Montelione, G.T.8
Baker, D.9
Kennedy, M.A.10
-
61
-
-
33847283016
-
ARIA2: Automated NOE assignment and data integration in NMR structure calculation
-
Rieping W, Habeck M, Bardiaux B, Bernard A, Malliavin TE, Nilges M (2007) ARIA2: Automated NOE assignment and data integration in NMR structure calculation. Bioinformatics 23:381-382
-
(2007)
Bioinformatics
, vol.23
, pp. 381-382
-
-
Rieping, W.1
Habeck, M.2
Bardiaux, B.3
Bernard, A.4
Malliavin, T.E.5
Nilges, M.6
-
63
-
-
33746238240
-
Fully automated structure determinations of the Fes SH2 domain using different sets of NMR spectra
-
Scott A, López-Méndez B, Güntert P (2006) Fully automated structure determinations of the Fes SH2 domain using different sets of NMR spectra. Magn Reson Chem 44:S83-S88
-
(2006)
Magn Reson Chem
, vol.44
-
-
Scott, A.1
López-Méndez, B.2
Güntert, P.3
-
64
-
-
21244479278
-
G-matrix Fourier transform NOESY-based protocol for high-quality protein structure determination
-
Shen Y, Atreya HS, Liu GH, Szyperski T (2005) G-matrix Fourier transform NOESY-based protocol for high-quality protein structure determination. J Am Chem Soc 127:9085-9099
-
(2005)
J Am Chem Soc
, vol.127
, pp. 9085-9099
-
-
Shen, Y.1
Atreya, H.S.2
Liu, G.H.3
Szyperski, T.4
-
65
-
-
42449146665
-
Consistent blind protein structure generation from NMR chemical shift data
-
Shen Y, Lange O, Delaglio F, Rossi P, Aramini JM, Liu GH, Eletsky A, Wu YB, Singarapu KK, Lemak A, Ignatchenko A, Arrowsmith CH, Szyperski T, Montelione GT, Baker D, Bax A (2008) Consistent blind protein structure generation from NMR chemical shift data. Proc Natl Acad Sci USA 105:4685-4690
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4685-4690
-
-
Shen, Y.1
Lange, O.2
Delaglio, F.3
Rossi, P.4
Aramini, J.M.5
Liu, G.H.6
Eletsky, A.7
Wu, Y.B.8
Singarapu, K.K.9
Lemak, A.10
Ignatchenko, A.11
Arrowsmith, C.H.12
Szyperski, T.13
Montelione, G.T.14
Baker, D.15
Bax, A.16
-
66
-
-
36349027062
-
Improved segmental isotope labeling methods for the NMR study of multidomain or large proteins: Application to the RRMs of Npl3p and hnRNP L
-
Skrisovska L, Allain FHT (2008) Improved segmental isotope labeling methods for the NMR study of multidomain or large proteins: Application to the RRMs of Npl3p and hnRNP L. J Mol Biol 375:151-164
-
(2008)
J Mol Biol
, vol.375
, pp. 151-164
-
-
Skrisovska, L.1
Allain, F.H.T.2
-
67
-
-
0142211244
-
Smartnotebook: A semi-automated approach to protein sequential NMR resonance assignments
-
Slupsky CM, Boyko RF, Booth VK, Sykes BD (2003) Smartnotebook: A semi-automated approach to protein sequential NMR resonance assignments. J Biomol NMR 27:313-321
-
(2003)
J Biomol NMR
, vol.27
, pp. 313-321
-
-
Slupsky, C.M.1
Boyko, R.F.2
Booth, V.K.3
Sykes, B.D.4
-
69
-
-
0037357143
-
The precision of NMR structure ensembles revisited
-
Spronk CAEM, Nabuurs SB, Bonvin AMJJ, Krieger E, Vuister GW, Vriend G (2003) The precision of NMR structure ensembles revisited. J Biomol NMR 25:225-234
-
(2003)
J Biomol NMR
, vol.25
, pp. 225-234
-
-
Spronk, C.A.E.M.1
Nabuurs, S.B.2
Bonvin, A.M.J.J.3
Krieger, E.4
Vuister, G.W.5
Vriend, G.6
-
70
-
-
9944221417
-
Validation of protein structures derived by NMR spectroscopy
-
Spronk CAEM, Nabuurs SB, Krieger E, Vriend G, Vuister GW (2004) Validation of protein structures derived by NMR spectroscopy. Progr NMR Spectrosc 45:315-337
-
(2004)
Progr NMR Spectrosc
, vol.45
, pp. 315-337
-
-
Spronk, C.A.E.M.1
Nabuurs, S.B.2
Krieger, E.3
Vriend, G.4
Vuister, G.W.5
-
71
-
-
39149093421
-
Automated structure determination of proteins with the SAIL-FLYA NMR method
-
Takeda M, Ikeya T, Güntert P, Kainosho M (2007) Automated structure determination of proteins with the SAIL-FLYA NMR method. Nat Protoc 2:2896-2902
-
(2007)
Nat Protoc
, vol.2
, pp. 2896-2902
-
-
Takeda, M.1
Ikeya, T.2
Güntert, P.3
Kainosho, M.4
-
72
-
-
0033757870
-
Structural genomics in North America
-
Terwilliger TC (2000) Structural genomics in North America. Nature Struct Biol 7:935-939
-
(2000)
Nature Struct Biol
, vol.7
, pp. 935-939
-
-
Terwilliger, T.C.1
-
73
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinás P, Ulrich EL, Markley JL, Ionides J, Laue ED (2005) The CCPN data model for NMR spectroscopy: Development of a software pipeline. Proteins: Struct Funct Bioinf 59:687-696
-
(2005)
Proteins: Struct Funct Bioinf
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
Boucher, W.2
Stevens, T.J.3
Fogh, R.H.4
Pajon, A.5
Llinás, P.6
Ulrich, E.L.7
Markley, J.L.8
Ionides, J.9
Laue, E.D.10
-
77
-
-
18244366113
-
An NMR approach to structural proteomics
-
Yee A, Chang XQ, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH (2002) An NMR approach to structural proteomics. Proc Natl Acad Sci USA 99:1825-1830
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 1825-1830
-
-
Yee, A.1
Chang, X.Q.2
Pineda-Lucena, A.3
Wu, B.4
Semesi, A.5
Le, B.6
Ramelot, T.7
Lee, G.M.8
Bhattacharyya, S.9
Gutierrez, P.10
Denisov, A.11
Lee, C.H.12
Cort, J.R.13
Kozlov, G.14
Liao, J.15
Finak, G.16
Chen, L.17
Wishart, D.18
Lee, W.19
McIntosh, L.P.20
Gehring, K.21
Kennedy, M.A.22
Edwards, A.M.23
Arrowsmith, C.H.24
more..
-
78
-
-
0037349452
-
Structural proteomics: Toward high-throughput structural biology as a tool in functional genomics
-
Yee A, Pardee K, Christendat D, Savchenko A, Edwards AM, Arrowsmith CH (2003) Structural proteomics: Toward high-throughput structural biology as a tool in functional genomics. Accounts Chem Res 36:183-189
-
(2003)
Accounts Chem Res
, vol.36
, pp. 183-189
-
-
Yee, A.1
Pardee, K.2
Christendat, D.3
Savchenko, A.4
Edwards, A.M.5
Arrowsmith, C.H.6
-
80
-
-
0033762813
-
Structural genomics projects in Japan
-
Yokoyama S, Hirota H, Kigawa T, Yabuki T, Shlrouzu M, Terada T, Ito Y, Matsuo Y, Kuroda Y, Nishimura Y, Kyogoku Y, Miki K, Masui R, Kuramitsu S (2000) Structural genomics projects in Japan. Nature Struct Biol 7:943-945
-
(2000)
Nature Struct Biol
, vol.7
, pp. 943-945
-
-
Yokoyama, S.1
Hirota, H.2
Kigawa, T.3
Yabuki, T.4
Shlrouzu, M.5
Terada, T.6
Ito, Y.7
Matsuo, Y.8
Kuroda, Y.9
Nishimura, Y.10
Kyogoku, Y.11
Miki, K.12
Masui, R.13
Kuramitsu, S.14
-
81
-
-
33846045025
-
RIKEN aids international structural genomics efforts
-
Yokoyama S, Terwilliger TC, Kuramitsu S, Moras D, Sussman JL, Comm IE (2007) RIKEN aids international structural genomics efforts. Nature 445:21
-
(2007)
Nature
, vol.445
, pp. 21
-
-
Yokoyama, S.1
Terwilliger, T.C.2
Kuramitsu, S.3
Moras, D.4
Sussman, J.L.5
Comm, I.E.6
-
82
-
-
0031580198
-
Automated analysis of protein NMR assignments using methods from artificial intelligence
-
Zimmerman DE, Kulikowski CA, Huang YP, Feng WQ, Tashiro M, Shimotakahara S, Chien CY, Powers R, Montelione GT (1997) Automated analysis of protein NMR assignments using methods from artificial intelligence. J Mol Biol 269:592-610
-
(1997)
J Mol Biol
, vol.269
, pp. 592-610
-
-
Zimmerman, D.E.1
Kulikowski, C.A.2
Huang, Y.P.3
Feng, W.Q.4
Tashiro, M.5
Shimotakahara, S.6
Chien, C.Y.7
Powers, R.8
Montelione, G.T.9
|