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Volumn 2, Issue 11, 2007, Pages 2896-2902

Automated structure determination of proteins with the sail-flya nmr method

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CARBON; NITROGEN; PROTEIN;

EID: 39149093421     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2007.423     Document Type: Article
Times cited : (46)

References (18)
  • 1
    • 33644774471 scopus 로고    scopus 로고
    • Optimal isotope labelling for NMR protein structure determinations
    • Kainosho, M. et al. Optimal isotope labelling for NMR protein structure determinations. Nature 440, 52-57 (2006).
    • (2006) Nature , vol.440 , pp. 52-57
    • Kainosho, M.1
  • 2
    • 33746217519 scopus 로고    scopus 로고
    • Evaluation of stereo-array isotope labeling (SAIL) patterns for automated structural analysis of proteins with CYANA
    • Ikeya, T., Terauchi, T., GUntert, P. & Kainosho, M. Evaluation of stereo-array isotope labeling (SAIL) patterns for automated structural analysis of proteins with CYANA. Magn. Reson. Chem. 44, S152-S157 (2006).
    • (2006) Magn. Reson. Chem , vol.44 , pp. S152-S157
    • Ikeya, T.1    Terauchi, T.2    Guntert, P.3    Kainosho, M.4
  • 3
    • 33749524593 scopus 로고    scopus 로고
    • Automated protein structure determination from NMR spectra
    • Lopez-Mendez, B. & Guntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112-13122 (2006).
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 13112-13122
    • Lopez-Mendez, B.1    Guntert, P.2
  • 4
    • 0000441606 scopus 로고    scopus 로고
    • GARANT—a general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra
    • Bartels, C., Guntert, P., Billeter, M. & Wuthrich, K. GARANT—a general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J. Comput. Chem. 18, 139-149 (1997).
    • (1997) J. Comput. Chem , vol.18 , pp. 139-149
    • Bartels, C.1    Guntert, P.2    Billeter, M.3    Wuthrich, K.4
  • 5
    • 0000714031 scopus 로고    scopus 로고
    • Automated sequence-specific NMR assignment of homologous proteins using the program GARANT
    • Bartels, C., Billeter, M., Guntert, P. & Wuthrich, K. Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR 7, 207-213 (1996).
    • (1996) J. Biomol. NMR , vol.7 , pp. 207-213
    • Bartels, C.1    Billeter, M.2    Guntert, P.3    Wuthrich, K.4
  • 6
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Guntert, P., Mumenthaler, C. & Wuthrich, K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273, 283-298 (1997).
    • (1997) J. Mol. Biol , vol.273 , pp. 283-298
    • Guntert, P.1    Mumenthaler, C.2    Wuthrich, K.3
  • 7
    • 0036308102 scopus 로고    scopus 로고
    • Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
    • Herrmann, T., Guntert, P. & Wuthrich, K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 319, 209-227 (2002).
    • (2002) J. Mol. Biol , vol.319 , pp. 209-227
    • Herrmann, T.1    Guntert, P.2    Wuthrich, K.3
  • 8
    • 4644340524 scopus 로고    scopus 로고
    • Automated NMR structure calculation with CYANA
    • Guntert, P. Automated NMR structure calculation with CYANA. Methods Mol. Biol. 278, 353-378 (2004).
    • (2004) Methods Mol. Biol , vol.278 , pp. 353-378
    • Guntert, P.1
  • 9
    • 11244300993 scopus 로고    scopus 로고
    • Efficient production of isotopically labeled proteins by cell-free synthesis: A practical protocol
    • Torizawa, T., Shimizu, M., Taoka, M., Miyano, H. & Kainosho, M. Efficient production of isotopically labeled proteins by cell-free synthesis: a practical protocol. J. Biomol. NMR 30, 311-325 (2004).
    • (2004) J. Biomol. NMR , vol.30 , pp. 311-325
    • Torizawa, T.1    Shimizu, M.2    Taoka, M.3    Miyano, H.4    Kainosho, M.5
  • 11
    • 24744440330 scopus 로고    scopus 로고
    • NMR assignment methods for the aromatic ring resonances of phenylalanine and tyrosine residues in proteins
    • Torizawa, T., Ono, A.M., Terauchi, T. & Kainosho, M. NMR assignment methods for the aromatic ring resonances of phenylalanine and tyrosine residues in proteins. J. Am. Chem. Soc. 127, 12620-12626 (2005).
    • (2005) J. Am. Chem. Soc , vol.127 , pp. 12620-12626
    • Torizawa, T.1    Ono, A.M.2    Terauchi, T.3    Kainosho, M.4
  • 12
    • 0029126557 scopus 로고
    • Comparison of Milli-Q PF Plus water to DEPC-treated water in the preparation and analysis of RNA
    • Huang, Y.H., Leblanc, P., Apostolou, V., Stewart, B. & Moreland, R.B. Comparison of Milli-Q PF Plus water to DEPC-treated water in the preparation and analysis of RNA. Biotechniques 19, 656-661 (1995).
    • (1995) Biotechniques , vol.19 , pp. 656-661
    • Huang, Y.H.1    Leblanc, P.2    Apostolou, V.3    Stewart, B.4    Moreland, R.B.5
  • 13
    • 0343459675 scopus 로고
    • The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
    • Bartels, C., Xia, T.H., Billeter, M., Guntert, P. & Wuthrich, K. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 6, 1-10 (1995).
    • (1995) J. Biomol. NMR , vol.6 , pp. 1-10
    • Bartels, C.1    Xia, T.H.2    Billeter, M.3    Guntert, P.4    Wuthrich, K.5
  • 14
    • 4644259437 scopus 로고    scopus 로고
    • Using NMRView to visualize and analyze the NMR spectra of macromolecules
    • Johnson, B.A. Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol. Biol. 278, 313-352 (2004).
    • (2004) Methods Mol. Biol , vol.278 , pp. 313-352
    • Johnson, B.A.1
  • 15
    • 0032247126 scopus 로고    scopus 로고
    • Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY
    • Koradi, R., Billeter, M., Engeli, M., Guntert, P. & Wuthrich, K. Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY. J. Magn. Reson. 135, 288-297 (1998).
    • (1998) J. Magn. Reson , vol.135 , pp. 288-297
    • Koradi, R.1    Billeter, M.2    Engeli, M.3    Guntert, P.4    Wuthrich, K.5
  • 16
    • 0033003335 scopus 로고    scopus 로고
    • Protein backbone angle restraints from searching a database for chemical shift and sequence homology
    • Cornilescu, G., Delaglio, F. & Bax, A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13, 289-302 (1999).
    • (1999) J. Biomol. NMR , vol.13 , pp. 289-302
    • Cornilescu, G.1    Delaglio, F.2    Bax, A.3
  • 17
    • 0242355012 scopus 로고    scopus 로고
    • Influence ofthe completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment
    • Jee, J. & Guntert, P. Influence ofthe completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment. J. Struct. Funct. Genomics 4, 179-189 (2003).
    • (2003) J. Struct. Funct. Genomics , vol.4 , pp. 179-189
    • Jee, J.1    Guntert, P.2
  • 18
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M. & Wuthrich, K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14, 51-55 (1996).
    • (1996) J. Mol. Graph , vol.14 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wuthrich, K.3


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