메뉴 건너뛰기




Volumn 24, Issue 13, 2008, Pages

Contact replacement for NMR resonance assignment

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

EID: 46249086182     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn167     Document Type: Article
Times cited : (18)

References (35)
  • 1
    • 0033677333 scopus 로고    scopus 로고
    • The NOESY jigsaw: Automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data
    • Bailey-Kellogg,C. et al. (2000) The NOESY jigsaw: Automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data. J. Comp. Biol., 7, 537-558.
    • (2000) J. Comp. Biol , vol.7 , pp. 537-558
    • Bailey-Kellogg, C.1
  • 2
    • 23844549876 scopus 로고    scopus 로고
    • A random graph approach to NMR sequential assignment
    • Bailey-Kellogg,C. et al. (2005) A random graph approach to NMR sequential assignment. J. Comp. Biol., 12, 569-583.
    • (2005) J. Comp. Biol , vol.12 , pp. 569-583
    • Bailey-Kellogg, C.1
  • 3
    • 0000441606 scopus 로고    scopus 로고
    • Garant - a general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra
    • Bartels,C. et al. (1997) Garant - a general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J Comp. Chem., 18, 139-149.
    • (1997) J Comp. Chem , vol.18 , pp. 139-149
    • Bartels, C.1
  • 5
    • 11944253901 scopus 로고    scopus 로고
    • Cambridge University Press, Cambridge, UK
    • Bollobas,B. (2001) Random Graphs. Cambridge University Press, Cambridge, UK.
    • (2001) Random Graphs
    • Bollobas, B.1
  • 6
    • 0027434240 scopus 로고
    • Mapping of the binding interfaces ofthe proteins of the bacterial phosphotransferase system, HPr and IIAglc
    • Chen,Y. et al. (1993) Mapping of the binding interfaces ofthe proteins of the bacterial phosphotransferase system, HPr and IIAglc. Biochemistry, 32, 32-37.
    • (1993) Biochemistry , vol.32 , pp. 32-37
    • Chen, Y.1
  • 7
    • 0033027208 scopus 로고    scopus 로고
    • Completeness of NOEs in protein structures: A statistical analysis of NMR data
    • Doreleijers,J. et al. (1999) Completeness of NOEs in protein structures: A statistical analysis of NMR data. J. Biomol. NMR, 14, 123-132.
    • (1999) J. Biomol. NMR , vol.14 , pp. 123-132
    • Doreleijers, J.1
  • 8
    • 2442475806 scopus 로고    scopus 로고
    • Rapid protein structure detection and assignment using residual dipolar couplings
    • Technical Report CMU-CS-02-195, School of Computer Science, Carnegie Mellon University
    • Erdmann,M. and Rule,G. (2002) Rapid protein structure detection and assignment using residual dipolar couplings. Technical Report CMU-CS-02-195, School of Computer Science, Carnegie Mellon University.
    • (2002)
    • Erdmann, M.1    Rule, G.2
  • 10
    • 0036588883 scopus 로고    scopus 로고
    • Approximating the longest cycle problem in sparse graphs
    • Feder,T. et al. (2002) Approximating the longest cycle problem in sparse graphs. SIAM J. Comput., 31, 1596-1607.
    • (2002) SIAM J. Comput , vol.31 , pp. 1596-1607
    • Feder, T.1
  • 12
    • 0001309322 scopus 로고
    • The planar hamiltonian circuit problem is NP-complete
    • Garey,M. et al. (1976) The planar hamiltonian circuit problem is NP-complete. SIAM J. Comput., 5, 704-714.
    • (1976) SIAM J. Comput , vol.5 , pp. 704-714
    • Garey, M.1
  • 13
    • 0033757115 scopus 로고    scopus 로고
    • Sequence-specific NMR assignment of proteins by global fragment mapping with program Mapper
    • Günte,P. et al. (2000) Sequence-specific NMR assignment of proteins by global fragment mapping with program Mapper. J. Biomol. NMR, 17, 129-137.
    • (2000) J. Biomol. NMR , vol.17 , pp. 129-137
    • Günte, P.1
  • 14
    • 0030708525 scopus 로고    scopus 로고
    • Drug design: Discovering high-affinity ligands for proteins
    • Hajduk,P. et al. (1997) Drug design: Discovering high-affinity ligands for proteins, Science, 278, 497-499.
    • (1997) Science , vol.278 , pp. 497-499
    • Hajduk, P.1
  • 15
    • 4644234334 scopus 로고    scopus 로고
    • MARS - robust automatic backbone assignment of proteins
    • Jung,J. and Zweckstetter,M. (2004) MARS - robust automatic backbone assignment of proteins. J. Biomol. NMR, 30, 11-32.
    • (2004) J. Biomol. NMR , vol.30 , pp. 11-32
    • Jung, J.1    Zweckstetter, M.2
  • 16
    • 32144464187 scopus 로고    scopus 로고
    • An efficient randomized algorithm for contact-based NMR backbone resonance assignment
    • Kamisetty,H. et al. (2006) An efficient randomized algorithm for contact-based NMR backbone resonance assignment. Bioinformatics, 22, 172-180.
    • (2006) Bioinformatics , vol.22 , pp. 172-180
    • Kamisetty, H.1
  • 17
    • 0031853060 scopus 로고    scopus 로고
    • Protein dynamics from NMR
    • Kay,L. (1998) Protein dynamics from NMR. Nat. Struct. Biol., 5 (Suppl), 513-517.
    • (1998) Nat. Struct. Biol , vol.5 , Issue.SUPPL. , pp. 513-517
    • Kay, L.1
  • 18
    • 1842555458 scopus 로고    scopus 로고
    • An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments
    • Langmead,C. and Donald,B. (2004) An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments. J. Biomol. NMR, 29, 111-138.
    • (2004) J. Biomol. NMR , vol.29 , pp. 111-138
    • Langmead, C.1    Donald, B.2
  • 19
    • 3142588772 scopus 로고    scopus 로고
    • A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments
    • Langmead,C. et al. (2004) A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. J. Comp. Biol., 11, 277-298.
    • (2004) J. Comp. Biol , vol.11 , pp. 277-298
    • Langmead, C.1
  • 20
    • 2442498884 scopus 로고    scopus 로고
    • An efficient branch-and-bound algorithm for assignment of protein backbone NMR peaks
    • Palo Alto, CA, USA. pp
    • Lin,G. et al. (2002) An efficient branch-and-bound algorithm for assignment of protein backbone NMR peaks. In Proceedings of the Computer Society Conference on Bioinformatics, Palo Alto, CA, USA. pp. 165-174.
    • (2002) Proceedings of the Computer Society Conference on Bioinformatics , pp. 165-174
    • Lin, G.1
  • 21
    • 0033768267 scopus 로고    scopus 로고
    • Protein NMR spectroscopy in structural genomics
    • Montelione,G. et al. (2000) Protein NMR spectroscopy in structural genomics. Nat. Struct. Biol., 7 (Suppl), 982-985.
    • (2000) Nat. Struct. Biol , vol.7 , Issue.SUPPL. , pp. 982-985
    • Montelione, G.1
  • 22
    • 0032857781 scopus 로고    scopus 로고
    • Automated analysis of NMR assignments and structures for proteins
    • Moseley,H. and Montelione,G. (1999) Automated analysis of NMR assignments and structures for proteins. Curr. Opin. Struct. Biol. 9, 635-642.
    • (1999) Curr. Opin. Struct. Biol , vol.9 , pp. 635-642
    • Moseley, H.1    Montelione, G.2
  • 23
    • 0030217514 scopus 로고    scopus 로고
    • Nuclear magnetic resonance studies of biopolymer dynamics
    • Palmer III,A. et al. (1996) Nuclear magnetic resonance studies of biopolymer dynamics. J. Phys. Chem., 100, 13293-13310.
    • (1996) J. Phys. Chem , vol.100 , pp. 13293-13310
    • Palmer III, A.1
  • 24
    • 18844370980 scopus 로고    scopus 로고
    • On a simple randomized algorithm for finding a 2-factor in sparse graphs
    • Pandurangan,G. (2005) On a simple randomized algorithm for finding a 2-factor in sparse graphs. Inform. Process. Lett., 95, 321-327.
    • (2005) Inform. Process. Lett , vol.95 , pp. 321-327
    • Pandurangan, G.1
  • 25
    • 0039933545 scopus 로고
    • The NP-completeness of the Hamiltonian cycle problem in planar digraphs with degree bound two
    • Plesnik,J. (1979) The NP-completeness of the Hamiltonian cycle problem in planar digraphs with degree bound two. Inform. Process. Lett., 8, 199-201.
    • (1979) Inform. Process. Lett , vol.8 , pp. 199-201
    • Plesnik, J.1
  • 26
    • 0032866939 scopus 로고    scopus 로고
    • RESCUE: An artificial neural network tool for the NMR spectral assignment of proteins
    • Pons,J. and Delsuc,M. (1999) RESCUE: An artificial neural network tool for the NMR spectral assignment of proteins. J. Biomol. NMR, 15 15-26.
    • (1999) J. Biomol. NMR , vol.15 , pp. 15-26
    • Pons, J.1    Delsuc, M.2
  • 27
    • 0036462495 scopus 로고    scopus 로고
    • Semiautomatic sequence-specific assignment of proteins based on the tertiary structure-the program ST2NMR
    • Pristovek,P. et al. (2002) Semiautomatic sequence-specific assignment of proteins based on the tertiary structure-the program ST2NMR. J. Comp. Chem., 23, 335-340.
    • (2002) J. Comp. Chem , vol.23 , pp. 335-340
    • Pristovek, P.1
  • 28
    • 0002660809 scopus 로고
    • The detection of sub-units within the crystallographic asymmetric unit
    • Rossman,M. and Blow,D. (1962) The detection of sub-units within the crystallographic asymmetric unit. Acta. Cryst., 15, 24-31.
    • (1962) Acta. Cryst , vol.15 , pp. 24-31
    • Rossman, M.1    Blow, D.2
  • 29
    • 0029836953 scopus 로고    scopus 로고
    • Discovering high-affinity ligands for proteins: SAR by NMR
    • Shuker,S. et al. (1996) Discovering high-affinity ligands for proteins: SAR by NMR. Science, 274, 1531-1534.
    • (1996) Science , vol.274 , pp. 1531-1534
    • Shuker, S.1
  • 30
    • 14644426041 scopus 로고    scopus 로고
    • Model-based assignment and inference of protein backbone nuclear magnetic resonances
    • Article 6
    • Vitek,O. et al. (2004) Model-based assignment and inference of protein backbone nuclear magnetic resonances. Stat. Appli. Gene. Mol. Biol., 3, Article 6, 1-33. http://www.bepress.com/sagmb/vol3/ iss1/art6/.
    • (2004) Stat. Appli. Gene. Mol. Biol , vol.3 , pp. 1-33
    • Vitek, O.1
  • 31
    • 27544498317 scopus 로고    scopus 로고
    • Reconsidering complete search algorithms for protein backbone NMR assignment
    • ii230-236
    • Vitek,O. et al. (2005) Reconsidering complete search algorithms for protein backbone NMR assignment. Bioinformatics, 21, ii230-236.
    • (2005) Bioinformatics , vol.21
    • Vitek, O.1
  • 32
    • 33746636070 scopus 로고    scopus 로고
    • Inferential backbone assignment for sparse data
    • Vitek,O. et al. (2006) Inferential backbone assignment for sparse data. J. Biomol. NMR, 35, 187-208.
    • (2006) J. Biomol. NMR , vol.35 , pp. 187-208
    • Vitek, O.1
  • 33
    • 46249122287 scopus 로고    scopus 로고
    • A hierarchical grow-and-match algorithm for backbone resonance assignments given 3D structure
    • Boston, MA. USA. pp
    • Xiong,F. and Bailey-Kellogg,C. (2007) A hierarchical grow-and-match algorithm for backbone resonance assignments given 3D structure. In Proceedings of IEEE Bioinformatics and Bioengineering, Boston, MA. USA. pp. 403-410.
    • (2007) Proceedings of IEEE Bioinformatics and Bioengineering , pp. 403-410
    • Xiong, F.1    Bailey-Kellogg, C.2
  • 35
    • 0031580198 scopus 로고    scopus 로고
    • Automated analysis of protein NMR assignments using methods from artificial intelligence
    • Zimmerman,D. et al. (1997) Automated analysis of protein NMR assignments using methods from artificial intelligence. J. Mol. Biol. 269, 592-610.
    • (1997) J. Mol. Biol , vol.269 , pp. 592-610
    • Zimmerman, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.