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Volumn 5, Issue 1, 2009, Pages

TraR, a homolog of a RNAP secondary channel interactor, modulates transcription

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; PROTEIN DKSA; PROTEIN PPGPP; PROTEIN TRAR; RIBOSOME RNA; RNA POLYMERASE; UNCLASSIFIED DRUG; AMINO ACID; BACTERIAL RNA; DKSA PROTEIN, E COLI; DNA DIRECTED RNA POLYMERASE; ESCHERICHIA COLI PROTEIN; TRANSCRIPTION FACTOR; TRAR PROTEIN, E COLI;

EID: 59249092262     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000345     Document Type: Article
Times cited : (43)

References (62)
  • 1
    • 0003174053 scopus 로고    scopus 로고
    • The stringent response
    • Neidhardt FC, Curtiss R 3rd, Ingraham EC, Lin ECC, Low KB, et al, eds, 2nd ed. Washington, D.C, American Society for Microbiology. pp
    • Cashel M, Gentry D, Hernandez VJ, Vinella D (1996) The stringent response. In: Neidhardt FC, Curtiss R 3rd, Ingraham EC, Lin ECC, Low KB, et al., eds. Escherichia coli and Salmonella: cellular and molecular biology. 2nd ed. Washington, D.C.: American Society for Microbiology. pp 1458-1496.
    • (1996) Escherichia coli and Salmonella: Cellular and molecular biology , pp. 1458-1496
    • Cashel, M.1    Gentry, D.2    Hernandez, V.J.3    Vinella, D.4
  • 4
    • 0036331056 scopus 로고    scopus 로고
    • DksA affects ppGpp induction of RpoS at a translational level
    • Brown L, Gentry D, Elliott T, Cashel M (2002) DksA affects ppGpp induction of RpoS at a translational level. J Bacteriol 184: 4455-4465.
    • (2002) J Bacteriol , vol.184 , pp. 4455-4465
    • Brown, L.1    Gentry, D.2    Elliott, T.3    Cashel, M.4
  • 5
    • 4043069926 scopus 로고    scopus 로고
    • DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
    • Paul BJ, Barker MM, Ross W, Schneider DA, Webb C, et al. (2004) DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. Cell 118: 311-322.
    • (2004) Cell , vol.118 , pp. 311-322
    • Paul, B.J.1    Barker, M.M.2    Ross, W.3    Schneider, D.A.4    Webb, C.5
  • 6
    • 20344363655 scopus 로고    scopus 로고
    • DksA potentiates direct activation of amino acid promoters by ppGpp
    • Paul BJ, Berkmen MB, Gourse RL (2005) DksA potentiates direct activation of amino acid promoters by ppGpp. Proc Natl Acad Sci USA 102: 7823-7828.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 7823-7828
    • Paul, B.J.1    Berkmen, M.B.2    Gourse, R.L.3
  • 7
    • 34447540221 scopus 로고    scopus 로고
    • Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli
    • Magnusson LU, Gummesson B, Joksimovic P, Farewell A, Nystrom T (2007) Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli. J Bacteriol 189: 5193-5202.
    • (2007) J Bacteriol , vol.189 , pp. 5193-5202
    • Magnusson, L.U.1    Gummesson, B.2    Joksimovic, P.3    Farewell, A.4    Nystrom, T.5
  • 8
    • 39849100395 scopus 로고    scopus 로고
    • Regulation of the fimB promoter: A case of differential regulation by ppGpp and DksA in vivo
    • Aberg A, Shingler V, Balsalobre C (2008) Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo. Mol Microbiol 67: 1223-1241.
    • (2008) Mol Microbiol , vol.67 , pp. 1223-1241
    • Aberg, A.1    Shingler, V.2    Balsalobre, C.3
  • 9
    • 0028236749 scopus 로고
    • Cloning, sequencing, and characterization of multicopy suppressors of a mukB mutation in Escherichia coli
    • Yamanaka K, Mitani T, Ogura T, Niki H, Hiraga S (1994) Cloning, sequencing, and characterization of multicopy suppressors of a mukB mutation in Escherichia coli. Mol Microbiol 13: 301-312.
    • (1994) Mol Microbiol , vol.13 , pp. 301-312
    • Yamanaka, K.1    Mitani, T.2    Ogura, T.3    Niki, H.4    Hiraga, S.5
  • 10
    • 21244457233 scopus 로고    scopus 로고
    • RecN protein and transcription factor DksA combine to promote faithful recombinational repair of DNA double-strand breaks
    • Meddows TR, Savory AP, Grove JI, Moore T, Lloyd RG (2005) RecN protein and transcription factor DksA combine to promote faithful recombinational repair of DNA double-strand breaks. Mol Microbiol 57: 97-110.
    • (2005) Mol Microbiol , vol.57 , pp. 97-110
    • Meddows, T.R.1    Savory, A.P.2    Grove, J.I.3    Moore, T.4    Lloyd, R.G.5
  • 11
    • 0025266330 scopus 로고
    • Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation
    • Kang PJ, Craig EA (1990) Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation. J Bacteriol 172: 2055-2064.
    • (1990) J Bacteriol , vol.172 , pp. 2055-2064
    • Kang, P.J.1    Craig, E.A.2
  • 12
    • 4544239714 scopus 로고    scopus 로고
    • ppGpp-dependent stationary phase induction of genes on Salmonella pathogenicity island 1
    • Song M, Kim HJ, Kim EY, Shin M, Lee HC, et al. (2004) ppGpp-dependent stationary phase induction of genes on Salmonella pathogenicity island 1. J Biol Chem 279: 34183-34190.
    • (2004) J Biol Chem , vol.279 , pp. 34183-34190
    • Song, M.1    Kim, H.J.2    Kim, E.Y.3    Shin, M.4    Lee, H.C.5
  • 13
    • 33745221184 scopus 로고    scopus 로고
    • ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes
    • Nakanishi N, Abe H, Ogura Y, Hayashi T, Tashiro K, et al. (2006) ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes. Mol Microbiol 61: 194-205.
    • (2006) Mol Microbiol , vol.61 , pp. 194-205
    • Nakanishi, N.1    Abe, H.2    Ogura, Y.3    Hayashi, T.4    Tashiro, K.5
  • 14
    • 33749571323 scopus 로고    scopus 로고
    • The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella
    • Thompson A, Rolfe MD, Lucchini S, Schwerk P, Hinton JC, et al. (2006) The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella. J Biol Chem 281: 30112-30121.
    • (2006) J Biol Chem , vol.281 , pp. 30112-30121
    • Thompson, A.1    Rolfe, M.D.2    Lucchini, S.3    Schwerk, P.4    Hinton, J.C.5
  • 15
    • 4043108470 scopus 로고    scopus 로고
    • Regulation through the secondary channel-structural framework for ppGpp-DksA synergism during transcription
    • Perederina A, Svetlov V, Vassylyeva MN, Tahirov TH, Yokoyama S, et al. (2004) Regulation through the secondary channel-structural framework for ppGpp-DksA synergism during transcription. Cell 118: 297-309.
    • (2004) Cell , vol.118 , pp. 297-309
    • Perederina, A.1    Svetlov, V.2    Vassylyeva, M.N.3    Tahirov, T.H.4    Yokoyama, S.5
  • 17
    • 0027761137 scopus 로고
    • Multiple RNA polymerase conformations and GreA: Control of the fidelity of transcription
    • Erie DA, Hajiseyedjavadi O, Young MC, von Hippel PH (1993) Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription. Science 262: 867-873.
    • (1993) Science , vol.262 , pp. 867-873
    • Erie, D.A.1    Hajiseyedjavadi, O.2    Young, M.C.3    von Hippel, P.H.4
  • 18
    • 0346258014 scopus 로고    scopus 로고
    • Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
    • Shaevitz JW, Abbondanzieri EA, Landick R, Block SM (2003) Backtracking by single RNA polymerase molecules observed at near-base-pair resolution. Nature 426: 684-687.
    • (2003) Nature , vol.426 , pp. 684-687
    • Shaevitz, J.W.1    Abbondanzieri, E.A.2    Landick, R.3    Block, S.M.4
  • 19
    • 0043244876 scopus 로고    scopus 로고
    • Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage
    • Kettenberger H, Armache KJ, Cramer P (2003) Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage. Cell 114: 347-357.
    • (2003) Cell , vol.114 , pp. 347-357
    • Kettenberger, H.1    Armache, K.J.2    Cramer, P.3
  • 20
    • 0028840106 scopus 로고
    • Crystal structure of the GreA transcript cleavage factor from Escherichia coli
    • Stebbins CE, Borukhov S, Orlova M, Polyakov A, Goldfarb A, et al. (1995) Crystal structure of the GreA transcript cleavage factor from Escherichia coli. Nature 373: 636-640.
    • (1995) Nature , vol.373 , pp. 636-640
    • Stebbins, C.E.1    Borukhov, S.2    Orlova, M.3    Polyakov, A.4    Goldfarb, A.5
  • 21
    • 0043244877 scopus 로고    scopus 로고
    • Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase
    • Opalka N, Chlenov M, Chacon P, Rice WJ, Wriggers W, et al. (2003) Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase. Cell 114: 335-345.
    • (2003) Cell , vol.114 , pp. 335-345
    • Opalka, N.1    Chlenov, M.2    Chacon, P.3    Rice, W.J.4    Wriggers, W.5
  • 22
    • 33744962968 scopus 로고    scopus 로고
    • Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA
    • Potrykus K, Vinella D, Murphy H, Szalewska-Palasz A, D'Ari R, et al. (2006) Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA. J Biol Chem 281: 15238-15248.
    • (2006) J Biol Chem , vol.281 , pp. 15238-15248
    • Potrykus, K.1    Vinella, D.2    Murphy, H.3    Szalewska-Palasz, A.4    D'Ari, R.5
  • 23
    • 33846604629 scopus 로고    scopus 로고
    • Effects of DksA, GreA, and GreB on transcription initiation: Insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase
    • Rutherford ST, Lemke JJ, Vrentas CE, Gaal T, Ross W, et al. (2007) Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase. J Mol Biol 366: 1243-1257.
    • (2007) J Mol Biol , vol.366 , pp. 1243-1257
    • Rutherford, S.T.1    Lemke, J.J.2    Vrentas, C.E.3    Gaal, T.4    Ross, W.5
  • 24
    • 40049090539 scopus 로고    scopus 로고
    • Still looking for the magic spot: The crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation
    • Vrentas CE, Gaal T, Berkmen MB, Rutherford ST, Haugen SP, et al. (2008) Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation. J Mol Biol 377: 551-564.
    • (2008) J Mol Biol , vol.377 , pp. 551-564
    • Vrentas, C.E.1    Gaal, T.2    Berkmen, M.B.3    Rutherford, S.T.4    Haugen, S.P.5
  • 25
    • 0028260496 scopus 로고
    • Molecular analysis of the F plasmid traVR region: TraV encodes a lipoprotein
    • Doran TJ, Loh SM, Firth N, Skurray RA (1994) Molecular analysis of the F plasmid traVR region: traV encodes a lipoprotein. J Bacteriol 176: 4182-4186.
    • (1994) J Bacteriol , vol.176 , pp. 4182-4186
    • Doran, T.J.1    Loh, S.M.2    Firth, N.3    Skurray, R.A.4
  • 26
    • 33750607431 scopus 로고    scopus 로고
    • Of what use is sex to bacteria?
    • Narra HP, Ochman H (2006) Of what use is sex to bacteria? Curr Biol 16: R705-710.
    • (2006) Curr Biol , vol.16
    • Narra, H.P.1    Ochman, H.2
  • 27
    • 0028335140 scopus 로고
    • Analysis of the sequence and gene products of the transfer region of the F sex factor
    • Frost LS, Ippen-Ihler K, Skurray RA (1994) Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiol Rev 58: 162-210.
    • (1994) Microbiol Rev , vol.58 , pp. 162-210
    • Frost, L.S.1    Ippen-Ihler, K.2    Skurray, R.A.3
  • 28
    • 0023404786 scopus 로고
    • Analysis of transfer genes and gene products within the traB-traC region of the Escherichia coli fertility factor, F
    • Moore D, Wu JH, Kathir P, Hamilton CM, Ippen-Ihler K (1987) Analysis of transfer genes and gene products within the traB-traC region of the Escherichia coli fertility factor, F. J Bacteriol 169: 3994-4002.
    • (1987) J Bacteriol , vol.169 , pp. 3994-4002
    • Moore, D.1    Wu, J.H.2    Kathir, P.3    Hamilton, C.M.4    Ippen-Ihler, K.5
  • 29
    • 0027523485 scopus 로고
    • Construction and analysis of F plasmid traR, trbJ, and trbH mutants
    • Maneewannakul K, Ippen-Ihler K (1993) Construction and analysis of F plasmid traR, trbJ, and trbH mutants. J Bacteriol 175: 1528-1531.
    • (1993) J Bacteriol , vol.175 , pp. 1528-1531
    • Maneewannakul, K.1    Ippen-Ihler, K.2
  • 30
    • 0019489081 scopus 로고
    • Guanosine polyphosphate production of Escherichia coli stringent and relaxed strains in the stationary phase of growth
    • Kramer M, Kecskes E, Horvath I (1981) Guanosine polyphosphate production of Escherichia coli stringent and relaxed strains in the stationary phase of growth. Acta Microbiol Acad Sci Hung 28: 165-170.
    • (1981) Acta Microbiol Acad Sci Hung , vol.28 , pp. 165-170
    • Kramer, M.1    Kecskes, E.2    Horvath, I.3
  • 31
    • 33644909105 scopus 로고    scopus 로고
    • Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli
    • Will WR, Frost LS (2006) Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli. J Bacteriol 188: 124-131.
    • (2006) J Bacteriol , vol.188 , pp. 124-131
    • Will, W.R.1    Frost, L.S.2
  • 32
    • 30744437713 scopus 로고    scopus 로고
    • Characterization of the opposing roles of H-NS and TraJ in transcriptional regulation of the F-plasmid tra operon
    • Will WR, Frost LS (2006) Characterization of the opposing roles of H-NS and TraJ in transcriptional regulation of the F-plasmid tra operon. J Bacteriol 188: 507-514.
    • (2006) J Bacteriol , vol.188 , pp. 507-514
    • Will, W.R.1    Frost, L.S.2
  • 33
    • 0021155247 scopus 로고
    • Regulation of the synthesis of ribosomes and ribosomal components
    • Nomura M, Gourse R, Baughman G (1984) Regulation of the synthesis of ribosomes and ribosomal components. Annu Rev Biochem 53: 75-117.
    • (1984) Annu Rev Biochem , vol.53 , pp. 75-117
    • Nomura, M.1    Gourse, R.2    Baughman, G.3
  • 34
    • 0000640710 scopus 로고    scopus 로고
    • Modulation of chemical composition and other parameters of the cell by growth rate
    • Neidhardt FC, Curtiss R 3rd, Ingraham EC, Lin ECC, Low KB, et al, eds, 2nd ed. Washington, D.C, American Society for Microbiology. pp
    • Bremer H, Dennis P (1996) Modulation of chemical composition and other parameters of the cell by growth rate. In: Neidhardt FC, Curtiss R 3rd, Ingraham EC, Lin ECC, Low KB, et al., eds. Escherichia coli and Salmonella: cellular and molecular biology. 2nd ed. Washington, D.C.: American Society for Microbiology. pp 1553-1569.
    • (1996) Escherichia coli and Salmonella: Cellular and molecular biology , pp. 1553-1569
    • Bremer, H.1    Dennis, P.2
  • 35
    • 0025353849 scopus 로고
    • Guanosine tetraphosphate (ppGpp) dependence of the growth rate control of rrnB P1 promoter activity in Escherichia coli
    • Hernandez VJ, Bremer H (1990) Guanosine tetraphosphate (ppGpp) dependence of the growth rate control of rrnB P1 promoter activity in Escherichia coli. J Biol Chem 265: 11605-11614.
    • (1990) J Biol Chem , vol.265 , pp. 11605-11614
    • Hernandez, V.J.1    Bremer, H.2
  • 36
    • 0025992789 scopus 로고
    • Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
    • Xiao H, Kalman M, Ikehara K, Zemel S, Glaser G, et al. (1991) Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. J Biol Chem 266: 5980-5990.
    • (1991) J Biol Chem , vol.266 , pp. 5980-5990
    • Xiao, H.1    Kalman, M.2    Ikehara, K.3    Zemel, S.4    Glaser, G.5
  • 37
    • 0030842026 scopus 로고    scopus 로고
    • Promoter selectivity of Escherichia coli RNA polymerase sigmaF holoenzyme involved in transcription of flagellar and chemotaxis genes
    • Kundu TK, Kusano S, Ishihama A (1997) Promoter selectivity of Escherichia coli RNA polymerase sigmaF holoenzyme involved in transcription of flagellar and chemotaxis genes. J Bacteriol 179: 4264-4269.
    • (1997) J Bacteriol , vol.179 , pp. 4264-4269
    • Kundu, T.K.1    Kusano, S.2    Ishihama, A.3
  • 38
    • 4043135220 scopus 로고    scopus 로고
    • Regulation of RNA polymerase through the secondary channel
    • Nickels BE, Hochschild A (2004) Regulation of RNA polymerase through the secondary channel. Cell 118: 281-284.
    • (2004) Cell , vol.118 , pp. 281-284
    • Nickels, B.E.1    Hochschild, A.2
  • 39
    • 2942635581 scopus 로고    scopus 로고
    • Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25
    • Adelman K, Yuzenkova J, La Porta A, Zenkin N, Lee J, et al. (2004) Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. Mol Cell 14: 753-762.
    • (2004) Mol Cell , vol.14 , pp. 753-762
    • Adelman, K.1    Yuzenkova, J.2    La Porta, A.3    Zenkin, N.4    Lee, J.5
  • 40
    • 2942696237 scopus 로고    scopus 로고
    • Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel
    • Mukhopadhyay J, Sineva E, Knight J, Levy RM, Ebright RH (2004) Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel. Mol Cell 14: 739-751.
    • (2004) Mol Cell , vol.14 , pp. 739-751
    • Mukhopadhyay, J.1    Sineva, E.2    Knight, J.3    Levy, R.M.4    Ebright, R.H.5
  • 41
    • 33644976966 scopus 로고    scopus 로고
    • Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors
    • Symersky J, Perederina A, Vassylyeva MN, Svetlov V, Artsimovitch I, et al. (2006) Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors. J Biol Chem 281: 1309-1312.
    • (2006) J Biol Chem , vol.281 , pp. 1309-1312
    • Symersky, J.1    Perederina, A.2    Vassylyeva, M.N.3    Svetlov, V.4    Artsimovitch, I.5
  • 42
    • 30344459408 scopus 로고    scopus 로고
    • Crystal structure of Thermus aquaticus Gfh1, a Gre-factor paralog that inhibits rather than stimulates transcript cleavage
    • Lamour V, Hogan BP, Erie DA, Darst SA (2006) Crystal structure of Thermus aquaticus Gfh1, a Gre-factor paralog that inhibits rather than stimulates transcript cleavage. J Mol Biol 356: 179-188.
    • (2006) J Mol Biol , vol.356 , pp. 179-188
    • Lamour, V.1    Hogan, B.P.2    Erie, D.A.3    Darst, S.A.4
  • 44
    • 14544287732 scopus 로고    scopus 로고
    • Escherichia coli ribosomal RNA transcription: Regulatory roles for ppGpp, NTPs, architectural proteins and a polymerase-binding protein
    • Gralla JD (2005) Escherichia coli ribosomal RNA transcription: regulatory roles for ppGpp, NTPs, architectural proteins and a polymerase-binding protein. Mol Microbiol 55: 973-977.
    • (2005) Mol Microbiol , vol.55 , pp. 973-977
    • Gralla, J.D.1
  • 45
    • 2042475439 scopus 로고    scopus 로고
    • Structural basis for transcription regulation by alarmone ppGpp
    • Artsimovitch I, Patlan V, Sekine S, Vassylyeva MN, Hosaka T, et al. (2004) Structural basis for transcription regulation by alarmone ppGpp. Cell 117: 299-310.
    • (2004) Cell , vol.117 , pp. 299-310
    • Artsimovitch, I.1    Patlan, V.2    Sekine, S.3    Vassylyeva, M.N.4    Hosaka, T.5
  • 46
    • 0035951305 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
    • Barker MM, Gaal T, Josaitis CA, Gourse RL (2001) Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J Mol Biol 305: 673-688.
    • (2001) J Mol Biol , vol.305 , pp. 673-688
    • Barker, M.M.1    Gaal, T.2    Josaitis, C.A.3    Gourse, R.L.4
  • 47
    • 0023115450 scopus 로고
    • Repressor gene finO in plasmids R100 and F: Constitutive transfer of plasmid F is caused by insertion of IS3 into F finO
    • Yoshioka Y, Ohtsubo H, Ohtsubo E (1987) Repressor gene finO in plasmids R100 and F: constitutive transfer of plasmid F is caused by insertion of IS3 into F finO. J Bacteriol 169: 619-623.
    • (1987) J Bacteriol , vol.169 , pp. 619-623
    • Yoshioka, Y.1    Ohtsubo, H.2    Ohtsubo, E.3
  • 48
    • 0035951301 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP
    • Barker MM, Gaal T, Gourse RL (2001) Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. J Mol Biol 305: 689-702.
    • (2001) J Mol Biol , vol.305 , pp. 689-702
    • Barker, M.M.1    Gaal, T.2    Gourse, R.L.3
  • 49
    • 0037093379 scopus 로고    scopus 로고
    • Regulation of sigma factor competition by the alarmone ppGpp
    • Jishage M, Kvint K, Shingler V, Nystrom T (2002) Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev 16: 1260-1270.
    • (2002) Genes Dev , vol.16 , pp. 1260-1270
    • Jishage, M.1    Kvint, K.2    Shingler, V.3    Nystrom, T.4
  • 50
    • 37749024824 scopus 로고    scopus 로고
    • ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms
    • Costanzo A, Nicoloff H, Barchinger SE, Banta AB, Gourse RL, et al. (2008) ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms. Mol Microbiol 67: 619-632.
    • (2008) Mol Microbiol , vol.67 , pp. 619-632
    • Costanzo, A.1    Nicoloff, H.2    Barchinger, S.E.3    Banta, A.B.4    Gourse, R.L.5
  • 51
  • 52
    • 34948824379 scopus 로고    scopus 로고
    • Role of nucleoid-associated proteins Hha and H-NS in expression of Salmonella enterica activators HilD, HilC, and RtsA required for cell invasion
    • Olekhnovich IN, Kadner RJ (2007) Role of nucleoid-associated proteins Hha and H-NS in expression of Salmonella enterica activators HilD, HilC, and RtsA required for cell invasion. J Bacteriol 189: 6882-6890.
    • (2007) J Bacteriol , vol.189 , pp. 6882-6890
    • Olekhnovich, I.N.1    Kadner, R.J.2
  • 54
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 6640-6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 56
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292: 195-202.
    • (1999) J Mol Biol , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 57
    • 27744596587 scopus 로고    scopus 로고
    • The mating pair stabilization protein, TraN, of the F plasmid is an outer-membrane protein with two regions that are important for its function in conjugation
    • Klimke WA, Rypien CD, Klinger B, Kennedy RA, Rodriguez-Maillard JM, et al. (2005) The mating pair stabilization protein, TraN, of the F plasmid is an outer-membrane protein with two regions that are important for its function in conjugation. Microbiology 151: 3527-3540.
    • (2005) Microbiology , vol.151 , pp. 3527-3540
    • Klimke, W.A.1    Rypien, C.D.2    Klinger, B.3    Kennedy, R.A.4    Rodriguez-Maillard, J.M.5
  • 58
    • 0344953579 scopus 로고    scopus 로고
    • OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain
    • Walsh NP, Alba BM, Bose B, Gross CA, Sauer RT (2003) OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain. Cell 113: 61-71.
    • (2003) Cell , vol.113 , pp. 61-71
    • Walsh, N.P.1    Alba, B.M.2    Bose, B.3    Gross, C.A.4    Sauer, R.T.5
  • 59
    • 0027930269 scopus 로고
    • GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure
    • Feng GH, Lee DN, Wang D, Chan CL, Landick R (1994) GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure. J Biol Chem 269: 22282-22294.
    • (1994) J Biol Chem , vol.269 , pp. 22282-22294
    • Feng, G.H.1    Lee, D.N.2    Wang, D.3    Chan, C.L.4    Landick, R.5
  • 61
    • 0017129243 scopus 로고
    • Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu
    • Casadaban MJ (1976) Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J Mol Biol 104: 541-555.
    • (1976) J Mol Biol , vol.104 , pp. 541-555
    • Casadaban, M.J.1
  • 62
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3


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