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Volumn 118, Issue 3, 2004, Pages 311-322

DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; GUANOSINE 3' DIPHOSPHATE 5' DIPHOSPHATE; PROTEIN; PROTEIN DKSA; RIBOSOME RNA; RNA POLYMERASE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 4043069926     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cell.2004.07.009     Document Type: Article
Times cited : (409)

References (39)
  • 1
    • 0031970775 scopus 로고    scopus 로고
    • Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo
    • Afflerbach H., Schroder O., Wagner R. Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo. Mol. Microbiol. 28:1998;641-653
    • (1998) Mol. Microbiol. , vol.28 , pp. 641-653
    • Afflerbach, H.1    Schroder, O.2    Wagner, R.3
  • 3
    • 0035685975 scopus 로고    scopus 로고
    • Regulation of rRNA transcription correlates with NTP-sensing
    • Barker M.M., Gourse R.L. Regulation of rRNA transcription correlates with NTP-sensing. J. Bacteriol. 183:2001;6315-6323
    • (2001) J. Bacteriol. , vol.183 , pp. 6315-6323
    • Barker, M.M.1    Gourse, R.L.2
  • 4
    • 0035951301 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP
    • a
    • Barker M.M., Gaal T., Gourse R.L. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. J. Mol. Biol. 305:2001;689-702. a
    • (2001) J. Mol. Biol. , vol.305 , pp. 689-702
    • Barker, M.M.1    Gaal, T.2    Gourse, R.L.3
  • 5
    • 0035951305 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
    • b
    • Barker M.M., Gaal T., Josaitis C.A., Gourse R.L. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J. Mol. Biol. 305:2001;673-688. b
    • (2001) J. Mol. Biol. , vol.305 , pp. 673-688
    • Barker, M.M.1    Gaal, T.2    Josaitis, C.A.3    Gourse, R.L.4
  • 6
    • 0028068735 scopus 로고
    • Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coli
    • Bartlett M.S., Gourse R.L. Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coli. J. Bacteriol. 176:1994;5560-5564
    • (1994) J. Bacteriol. , vol.176 , pp. 5560-5564
    • Bartlett, M.S.1    Gourse, R.L.2
  • 7
    • 0032486142 scopus 로고    scopus 로고
    • RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters
    • Bartlett M.S., Gaal T., Ross W., Gourse R.L. RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters. J. Mol. Biol. 279:1998;331-345
    • (1998) J. Mol. Biol. , vol.279 , pp. 331-345
    • Bartlett, M.S.1    Gaal, T.2    Ross, W.3    Gourse, R.L.4
  • 8
    • 0029670766 scopus 로고    scopus 로고
    • Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA, and a truncated R1pA
    • Bass S., Gu Q., Christen A. Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA, and a truncated R1pA. J. Bacteriol. 178:1996;1154-1161
    • (1996) J. Bacteriol. , vol.178 , pp. 1154-1161
    • Bass, S.1    Gu, Q.2    Christen, A.3
  • 9
    • 0028815976 scopus 로고
    • The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter
    • Bokal A.J., Ross W., Gourse R.L. The transcriptional activator protein FIS. DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter J. Mol. Biol. 245:1995;197-207
    • (1995) J. Mol. Biol. , vol.245 , pp. 197-207
    • Bokal, A.J.1    Ross, W.2    Gourse, R.L.3
  • 11
    • 0036331056 scopus 로고    scopus 로고
    • DksA affects ppGpp induction of RpoS at a translational level
    • Brown L., Gentry D., Elliott T., Cashel M. DksA affects ppGpp induction of RpoS at a translational level. J. Bacteriol. 184:2002;4455-4465
    • (2002) J. Bacteriol. , vol.184 , pp. 4455-4465
    • Brown, L.1    Gentry, D.2    Elliott, T.3    Cashel, M.4
  • 12
    • 0034629139 scopus 로고    scopus 로고
    • The study of guanosine 5′-diphosphate 3′-diphosphate-mediated transcription regulation in vitro using a coupled transcription-translation system
    • Choy H.E. The study of guanosine 5′-diphosphate 3′-diphosphate-mediated transcription regulation in vitro using a coupled transcription-translation system. J. Biol. Chem. 275:2000;6783-6789
    • (2000) J. Biol. Chem. , vol.275 , pp. 6783-6789
    • Choy, H.E.1
  • 13
    • 0028804889 scopus 로고
    • Control of rRNA transcription in Escherichia coli
    • Condon C., Squires C., Squires C.L. Control of rRNA transcription in Escherichia coli. Microbiol. Rev. 59:1995;623-645
    • (1995) Microbiol. Rev. , vol.59 , pp. 623-645
    • Condon, C.1    Squires, C.2    Squires, C.L.3
  • 14
    • 0037351068 scopus 로고    scopus 로고
    • Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals
    • Flynn J.M., Neher S.B., Kim Y.I., Sauer R.T., Baker T.A. Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. Mol. Cell. 11:2003;671-683
    • (2003) Mol. Cell , vol.11 , pp. 671-683
    • Flynn, J.M.1    Neher, S.B.2    Kim, Y.I.3    Sauer, R.T.4    Baker, T.A.5
  • 15
    • 0025102288 scopus 로고
    • Guanosine 3′-diphosphate 5′-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli
    • Gaal T., Gourse R.L. Guanosine 3′-diphosphate 5′-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli. Proc. Natl. Acad. Sci. USA. 87:1990;5533-5537
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 5533-5537
    • Gaal, T.1    Gourse, R.L.2
  • 16
    • 0031443321 scopus 로고    scopus 로고
    • Transcription regulation by initiating NTP concentration: RRNA synthesis in bacteria
    • Gaal T., Bartlett M.S., Ross W., Turnbough C.L. Jr., Gourse R.L. Transcription regulation by initiating NTP concentration. rRNA synthesis in bacteria Science. 278:1997;2092-2097
    • (1997) Science , vol.278 , pp. 2092-2097
    • Gaal, T.1    Bartlett, M.S.2    Ross, W.3    Turnbough Jr., C.L.4    Gourse, R.L.5
  • 18
    • 0023700867 scopus 로고
    • Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro
    • Gourse R.L. Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro. Nucleic Acids Res. 16:1988;9789-9809
    • (1988) Nucleic Acids Res. , vol.16 , pp. 9789-9809
    • Gourse, R.L.1
  • 19
    • 0029820872 scopus 로고    scopus 로고
    • RRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli
    • Gourse R.L., Gaal T., Bartlett M.S., Appleman J.A., Ross W. rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli. Annu. Rev. Microbiol. 50:1996;645-677
    • (1996) Annu. Rev. Microbiol. , vol.50 , pp. 645-677
    • Gourse, R.L.1    Gaal, T.2    Bartlett, M.S.3    Appleman, J.A.4    Ross, W.5
  • 20
    • 0036724358 scopus 로고    scopus 로고
    • Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli
    • Hirsch M., Elliott T. Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli. J. Bacteriol. 184:2002;5077-5087
    • (2002) J. Bacteriol. , vol.184 , pp. 5077-5087
    • Hirsch, M.1    Elliott, T.2
  • 21
    • 1842766260 scopus 로고    scopus 로고
    • Conformational antagonism between opposing active sites in a bifunctional RelA/SpoT homolog modulates (p)ppGpp metabolism during the stringent response
    • Hogg T., Mechold U., Malke H., Cashel M., Hilgenfeld R. Conformational antagonism between opposing active sites in a bifunctional RelA/SpoT homolog modulates (p)ppGpp metabolism during the stringent response. Cell. 117:2004;57-68
    • (2004) Cell , vol.117 , pp. 57-68
    • Hogg, T.1    Mechold, U.2    Malke, H.3    Cashel, M.4    Hilgenfeld, R.5
  • 23
    • 0025266330 scopus 로고
    • Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation
    • Kang P.J., Craig E.A. Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation. J. Bacteriol. 172:1990;2055-2064
    • (1990) J. Bacteriol. , vol.172 , pp. 2055-2064
    • Kang, P.J.1    Craig, E.A.2
  • 24
    • 2942538872 scopus 로고    scopus 로고
    • Unique roles of the rrn P2 rRNA promoters in Escherichia coli
    • Murray H.D., Gourse R.L. Unique roles of the rrn P2 rRNA promoters in Escherichia coli. Mol. Microbiol. 52:2004;1375-1387
    • (2004) Mol. Microbiol. , vol.52 , pp. 1375-1387
    • Murray, H.D.1    Gourse, R.L.2
  • 25
    • 0037215597 scopus 로고    scopus 로고
    • Regulation of the Escherichia coli rrnB P2 promoter
    • a
    • Murray H.D., Appleman J.A., Gourse R.L. Regulation of the Escherichia coli rrnB P2 promoter. J. Bacteriol. 185:2003;28-34. a
    • (2003) J. Bacteriol. , vol.185 , pp. 28-34
    • Murray, H.D.1    Appleman, J.A.2    Gourse, R.L.3
  • 26
    • 0041669435 scopus 로고    scopus 로고
    • Control of rRNA expression by small molecules is dynamic and nonredundant
    • b
    • Murray H.D., Schneider D.A., Gourse R.L. Control of rRNA expression by small molecules is dynamic and nonredundant. Mol. Cell. 12:2003;125-134. b
    • (2003) Mol. Cell , vol.12 , pp. 125-134
    • Murray, H.D.1    Schneider, D.A.2    Gourse, R.L.3
  • 27
    • 4043108470 scopus 로고    scopus 로고
    • Regulation through the secondary channel - Structural framework for ppGpp-DksA synergism during transcription
    • , this issue
    • Perederina A., Svetlov V., Vassylyeva M.N., Artsimovitch I., Yokoyama S., Vassylyev D. Regulation through the secondary channel - structural framework for ppGpp-DksA synergism during transcription. Cell. 118:2004;297-309., this issue
    • (2004) Cell , vol.118 , pp. 297-309
    • Perederina, A.1    Svetlov, V.2    Vassylyeva, M.N.3    Artsimovitch, I.4    Yokoyama, S.5    Vassylyev, D.6
  • 28
    • 0001763907 scopus 로고
    • The effects of a tryptophan-histidine deficiency in a mutant of Escherichia coli
    • Sands M.K., Roberts R.B. The effects of a tryptophan-histidine deficiency in a mutant of Escherichia coli. J. Bacteriol. 63:1952;505-511
    • (1952) J. Bacteriol. , vol.63 , pp. 505-511
    • Sands, M.K.1    Roberts, R.B.2
  • 29
    • 0001140586 scopus 로고
    • Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium
    • Schaechter M., Maaloe O., Kjeldgaard N.O. Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium. J. Gen. Microbiol. 19:1958;592-606
    • (1958) J. Gen. Microbiol. , vol.19 , pp. 592-606
    • Schaechter, M.1    Maaloe, O.2    Kjeldgaard, N.O.3
  • 30
    • 0141925855 scopus 로고    scopus 로고
    • Changes in Escherichia coli rRNA promoter activity correlate with changes in initiating nucleoside triphosphate and guanosine 5′ diphosphate 3′-diphosphate concentrations after induction of feedback control of ribosome synthesis
    • Schneider D.A., Gourse R.L. Changes in Escherichia coli rRNA promoter activity correlate with changes in initiating nucleoside triphosphate and guanosine 5′ diphosphate 3′-diphosphate concentrations after induction of feedback control of ribosome synthesis. J. Bacteriol. 185:2003;6185-6191
    • (2003) J. Bacteriol. , vol.185 , pp. 6185-6191
    • Schneider, D.A.1    Gourse, R.L.2
  • 31
    • 1542319732 scopus 로고    scopus 로고
    • Relationship between growth rate and ATP concentration in Escherichia coli
    • Schneider D.A., Gourse R.L. Relationship between growth rate and ATP concentration in Escherichia coli. J. Biol. Chem. 279:2004;8262-8268
    • (2004) J. Biol. Chem. , vol.279 , pp. 8262-8268
    • Schneider, D.A.1    Gourse, R.L.2
  • 32
    • 0037172994 scopus 로고    scopus 로고
    • NTP-sensing by rRNA promoters in Escherichia coli is direct
    • Schneider D.A., Gaal T., Gourse R.L. NTP-sensing by rRNA promoters in Escherichia coli is direct. Proc. Natl. Acad. Sci. USA. 99:2002;8602-8607
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 8602-8607
    • Schneider, D.A.1    Gaal, T.2    Gourse, R.L.3
  • 33
    • 0348011826 scopus 로고    scopus 로고
    • Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives
    • a
    • Schneider D.A., Murray H.D., Gourse R.L. Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives. Methods Enzymol. 370:2003;606-617. a
    • (2003) Methods Enzymol. , vol.370 , pp. 606-617
    • Schneider, D.A.1    Murray, H.D.2    Gourse, R.L.3
  • 35
    • 0016825910 scopus 로고
    • Guanosine 5′-diphosphate 3′-diphosphate (ppGpp) positive effector for histidine operon transcription and general signal for amino acid deficiency
    • Stephens J.C., Artz S.W., Ames B.N. Guanosine 5′-diphosphate 3′-diphosphate (ppGpp). positive effector for histidine operon transcription and general signal for amino acid deficiency Proc. Natl. Acad. Sci. USA. 72:1975;4389-4393
    • (1975) Proc. Natl. Acad. Sci. USA , vol.72 , pp. 4389-4393
    • Stephens, J.C.1    Artz, S.W.2    Ames, B.N.3
  • 36
    • 0031900977 scopus 로고    scopus 로고
    • Identification of Salmonella typhimurium genes required for colonization of the chicken alimentary tract and for virulence in newly hatched chicks
    • Turner A.K., Lovell M.A., Hulme S.D., Zhang-Barber L., Barrow P.A. Identification of Salmonella typhimurium genes required for colonization of the chicken alimentary tract and for virulence in newly hatched chicks. Infect. Immun. 66:1998;2099-2106
    • (1998) Infect. Immun. , vol.66 , pp. 2099-2106
    • Turner, A.K.1    Lovell, M.A.2    Hulme, S.D.3    Zhang-Barber, L.4    Barrow, P.A.5
  • 37
    • 0032870794 scopus 로고    scopus 로고
    • Effects of DksA and ClpP protease on sigma S production and virulence in Salmonella typhimurium
    • Webb C., Moreno M., Wilmes-Riesenberg M., Curtiss R., Foster J.W. Effects of DksA and ClpP protease on sigma S production and virulence in Salmonella typhimurium. Mol. Microbiol. 34:1999;112-123
    • (1999) Mol. Microbiol. , vol.34 , pp. 112-123
    • Webb, C.1    Moreno, M.2    Wilmes-Riesenberg, M.3    Curtiss, R.4    Foster, J.W.5
  • 38
    • 0025992789 scopus 로고
    • Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
    • Xiao H., Kalman M., Ikehara K., Zemel S., Glaser G., Cashel M. Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. J. Biol. Chem. 266:1991;5980-5990
    • (1991) J. Biol. Chem. , vol.266 , pp. 5980-5990
    • Xiao, H.1    Kalman, M.2    Ikehara, K.3    Zemel, S.4    Glaser, G.5    Cashel, M.6
  • 39
    • 0032539903 scopus 로고    scopus 로고
    • The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli
    • Zhou Y.N., Jin D.J. The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli. Proc. Natl. Acad. Sci. USA. 95:1998;2908-2913
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 2908-2913
    • Zhou, Y.N.1    Jin, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.