메뉴 건너뛰기




Volumn 305, Issue 4, 2001, Pages 673-688

Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

Author keywords

Amino acid biosynthesis; ppGpp; RNA polymerase; rRNA regulation; Stringent response

Indexed keywords

GUANOSINE 3' DIPHOSPHATE 5' DIPHOSPHATE; GUANOSINE 3' DIPHOSPHATE 5' TRIPHOSPHATE; HEPARIN; RIBOSOME RNA; RNA POLYMERASE;

EID: 0035951305     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.4327     Document Type: Article
Times cited : (290)

References (102)
  • 5
    • 0028291072 scopus 로고
    • Effects of guanosine 3′, 5′-bisdiphosphate (ppGpp) on rate of transcription elongation in isoleucine-starved Escherichia coli
    • (1994) J. Biol. Chem , vol.269 , pp. 16236-16241
    • Vogel, U.1    Jensen, K.F.2
  • 6
    • 0029166388 scopus 로고
    • Effects of the anti-terminator BoxA on transcription elongation kinetics and ppGpp inhibition of transcription elongation in Escherichia coli
    • (1995) J. Biol. Chem , vol.270 , pp. 18335-18340
    • Vogel, U.1    Jensen, K.F.2
  • 14
    • 0034118883 scopus 로고    scopus 로고
    • Regulation of rRNA transcription is remarkably robust: FIS compensates for altered nucleoside triphosphate sensing by mutant RNA polymerases at Escherichia coli rrn P1 promoters
    • (2000) J. Bacteriol , vol.182 , pp. 1969-1977
    • Bartlett, M.S.1    Gaal, T.2    Ross, W.3    Gourse, R.L.4
  • 19
    • 0017197488 scopus 로고
    • Dual-control of the tryptophan operon is mediated by both tryptophanyl-tRNA synthetase and the repressor
    • (1976) J. Mol. Biol , vol.103 , pp. 209-226
    • Morse, D.E.1    Morse, A.N.2
  • 20
    • 0017624838 scopus 로고
    • Cyclic AMP can replace the relA-dependent requirement for derepression of acetohydroxy acid synthase in E. coli K-12
    • (1977) Cell , vol.12 , pp. 1121-1126
    • Freundlich, M.1
  • 21
    • 0017615448 scopus 로고
    • rel-dependent methionine requirement in revertants of a methionyl-transfer RNA synthetase mutant of Escherichia coli
    • (1977) J. Mol. Biol , vol.111 , pp. 77-81
    • Somerville, C.R.1    Ahmed, A.2
  • 23
    • 0019585782 scopus 로고
    • Dependence of threonine operon expression on the relA gene allelic state and the level of guanosine tetraphosphate in E. coli
    • (1981) Biokhimiia , vol.46 , pp. 1267-1276
    • Perel'man, B.V.1    Shakulov, R.S.2
  • 28
    • 0030762573 scopus 로고    scopus 로고
    • Mutations that render the promoter of the histidine operon of Salmonella typhimurium insensitive to nutrient-rich medium repression and amino acid downshift
    • (1997) J. Bacteriol , vol.179 , pp. 5211-5217
    • Da Costa, X.J.1    Artz, S.W.2
  • 29
    • 0015919732 scopus 로고
    • Stimulation of lac transcription by guanosine 5′-diphosphate 2′(or 3′)-diphosphate and transfer ribonucleic acid
    • (1973) J. Biol. Chem , vol.248 , pp. 3356-3358
    • Aboud, M.1    Pastan, I.2
  • 30
    • 0016639257 scopus 로고
    • Activation of transcription by guanosine 5′-diphosphate, 3′-diphosphate, transfer ribonucleic acid, and novel protein from Escherichia coli
    • (1975) J. Biol. Chem , vol.250 , pp. 2189-2195
    • Aboud, M.1    Pastan, I.2
  • 31
    • 0034629139 scopus 로고    scopus 로고
    • The study of guanosine 5′-diphosphate 3′-diphosphate-mediated transcription regulation in vitro using a coupled transcription-translation system
    • (2000) J. Biol. Chem , vol.275 , pp. 6783-6789
    • Choy, H.E.1
  • 34
    • 0033039322 scopus 로고    scopus 로고
    • The alarmone (p)ppGpp mediates physiological-responsive control at the sigma 54-dependent Po promoter
    • (1999) Mol. Microbiol , vol.31 , pp. 1217-1228
    • Sze, C.C.1    Shingler, V.2
  • 35
    • 0034737294 scopus 로고    scopus 로고
    • Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression
    • (2000) Cell , vol.101 , pp. 35-45
    • McGlynn, P.1    Lloyd, R.G.2
  • 36
    • 0026788401 scopus 로고
    • Toxic effects of high levels of ppGpp in Escherichia coli are relieved by rpoB mutations
    • (1992) J. Biol. Chem , vol.267 , pp. 2337-2344
    • Tedin, K.1    Bremer, H.2
  • 41
    • 0019979340 scopus 로고
    • Initiation, pausing, and termination of transcription in the threonine operon regulatory region of Escherichia coli
    • (1982) J. Biol. Chem , vol.257 , pp. 3896-3904
    • Gardner, J.F.1
  • 45
    • 0021857751 scopus 로고
    • Kinetics of open complex formation between Escherichia coli RNA polymerase and the lacUV5 promoter. Evidence for a sequential mechanism involving three steps
    • (1985) Biochemistry , vol.24 , pp. 2712-2723
    • Buc, H.1    McClure, W.R.2
  • 49
    • 0026687894 scopus 로고
    • Interrelated effects of DNA supercoiling, ppGpp, and low salt on melting within the Escherichia coli ribosomal RNA rrnB P1 promoter
    • (1992) Mol. Microbiol , vol.6 , pp. 2243-2251
    • Ohlsen, K.L.1    Gralla, J.D.2
  • 54
    • 0032539903 scopus 로고    scopus 로고
    • The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 2908-2913
    • Zhou, Y.N.1    Jin, D.J.2
  • 55
    • 0035951301 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. II. Model for positive control based on properties of RNAP mutants and competition for RNAP
    • (2000) J. Mol. Biol , vol.305 , pp. 689-702
    • Barker, M.M.1    Gaal, T.2    Gourse, R.L.3
  • 56
    • 0023700867 scopus 로고
    • Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro
    • (1988) Nucl. Acids Res , vol.16 , pp. 9789-9809
    • Gourse, R.L.1
  • 57
    • 0025740392 scopus 로고
    • Factor-independent activation of Escherichia coli rRNA transcription. I. Kinetic analysis of the roles of the upstream activator region and supercoiling on transcription of the rrnB P1 promoter in vitro
    • (1991) J. Mol. Biol , vol.220 , pp. 555-568
    • Leirmo, S.1    Gourse, R.L.2
  • 65
    • 0014690564 scopus 로고
    • The control of ribonucleic acid synthesis in Escherichia coli 3. The functional relationship between purine ribonucleoside triphosphate pool sizes and the rate of ribonucleic acid accumulation
    • (1969) J. Biol. Chem , vol.244 , pp. 3125-3132
    • Gallant, J.1    Harada, B.2
  • 70
    • 0021348009 scopus 로고
    • Promoter selectivity of Escherichia coli RNA polymerase. Differential stringent control of the multiple promoters from ribosomal RNA and protein operons
    • (1984) J. Biol. Chem , vol.259 , pp. 1951-1957
    • Kajitani, M.1    Ishihama, A.2
  • 72
    • 0030805716 scopus 로고    scopus 로고
    • Guanosine 3′, 5′-bis(diphosphate) (ppGpp)-dependent inhibition of transcription from stringently controlled Escherichia coli promoters can be explained by an altered initiation pathway that traps RNA polymerase
    • (1997) Eur. J. Biochem , vol.247 , pp. 990-999
    • Heinemann, M.1    Wagner, R.2
  • 73
    • 0031714537 scopus 로고    scopus 로고
    • Guanosine tetraphosphate-induced dissociation of open complexes at the Escherichia coli ribosomal protein promoters rplJ and rpsA P1: Nanosecond depolarization spectroscopic studies
    • (1998) Biophys. Chem , vol.75 , pp. 21-32
    • Raghavan, A.1    Chatterji, D.2
  • 74
    • 0017086309 scopus 로고
    • RNA polymerase specificity and the control of growth
    • (1976) Nature , vol.263 , pp. 641-646
    • Travers, A.A.1
  • 80
    • 0023178463 scopus 로고
    • Expression of arg genes of Escherichia coli during arginine limitation dependent upon stringent control of translation
    • (1987) J. Bacteriol , vol.169 , pp. 1644-1650
    • Williams, M.G.1    Rogers, P.2
  • 83
    • 0018072926 scopus 로고
    • Correlation between the serine sensitivity and the derepressibility of the ilv genes in Escherichia coli relA Mutants
    • (1978) Mol. Gen. Genet , vol.165 , pp. 21-30
    • Uzan, M.1    Danchin, A.2
  • 92
    • 0015947670 scopus 로고
    • Preparation of guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate (pppGpp) from Escherichia coli ribosomes
    • (1974) Anal. Biochem , vol.57 , pp. 100-107
    • Cashel, M.1
  • 93
    • 0014939550 scopus 로고
    • The control of ribonucleic acid synthesis in Escherichia coli. V. Characterization of a nucleotide associated with the stringent response
    • (1970) J. Biol. Chem , vol.245 , pp. 2309-2318
    • Cashel, M.1    Kalbacher, B.2
  • 94
    • 0016748261 scopus 로고
    • A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography
    • (1975) Biochemistry , vol.14 , pp. 4634-4638
    • Burgess, R.R.1    Jendrisak, J.J.2
  • 99
    • 0026323912 scopus 로고
    • Use of equilibrium and kinetic measurements to determine the thermodynamic origins of stability and specificity and the mechanism of formation of site specific complexes between proteins and helical DNA
    • (1991) Methods Enzymol , vol.208 , pp. 291-343
    • Record, M.T.J.1    Ha, J.-H.2    Fisher, M.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.