Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA

Journal of Biological Chemistry

Volumn 281, Issue 22, 2006, Pages 15238-15248

  Potrykus, Katarzyna ^a,c   Vinella, Daniel ^a,b   Murphy, Helen ^a   Szalewska Palasz, Agnieszka ^a,c   D'Ari, Richard ^b   Cashel, Michael ^a  

^a EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

^b INSTITUT JACQUES MONOD   (France)

^c UNIVERSITY OF GDA SK   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME INHIBITION; ENZYME KINETICS; ESCHERICHIA COLI; PROTEINS; REACTION KINETICS; RNA;

GREA; PROMOTERS; RIBOSOMES; RNA POLYMERASE (RNAP);

BACTERIOLOGY;

BACTERIAL PROTEIN; BINDING PROTEIN; DEOXYRIBONUCLEASE I; PROTEIN DKSA; PROTEIN GREA; PROTEIN GREB; PROTEIN RRNB; RIBOSOME RNA; RNA POLYMERASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; ESCHERICHIA COLI; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN PURIFICATION; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

BASE SEQUENCE; DNA, BACTERIAL; DNA-DIRECTED RNA POLYMERASES; EPISTASIS, GENETIC; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; KINETICS; MODELS, BIOLOGICAL; MULTIPROTEIN COMPLEXES; PROMOTER REGIONS (GENETICS); RNA, BACTERIAL; RNA, RIBOSOMAL; RRNA OPERON; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 33744962968     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M601531200     Document Type: Article

References (41)

1. Borukhov, S., Lee, J., and Laptenko, O. (2005) Mol. Microbiol. 55, 1315-1324
2. Mukhopadhyay, J., Sineva, E., Knight, J., Levy, R. M., and Ebright, R. H. (2004) Mol. Cell 14, 739-751
3. Lamour, V., Hogan, B. P., Erie, D. A., and Darst, S. E. (2006) J. Mol. Biol. 356, 179-188
4. Symersky, J., Perederina, A., Vassylyeva, M. N., Svetlov, V., Artsimovitch, I., and Vassylyev, D. G. (2006) J. Biol. Chem. 281, 1309-1312
5. Zhang, G., Campbell, E. A. Minakhin, L., Richter, C., Severinov, K., and Darst, S. A. (1999) Cell 98, 811-824
6. Vassylyev, D. G., Sekine, S., Laptenko, O., Lee, J., Vassylyeva, M. N., Borukhov, S., and Yokoyama, S. (2002) Nature 417, 712-719
7. Nickels, B. E., and Hochschild, A. (2004) Cell 118, 281-284
8. Stebbins, C. E., Borukhov, S., Orlova, M., Polyakov, M., Goldfarb, A., and Darst, S. A. (1995) Nature 373, 636-640
9. Opalka, N., Chlenov, M., Chacon, P., Rice, W. J., Wriggers, W., and Darst, S. A. (2003) Cell 114, 335-345
10. Kettenberger, H., Armache, K.-J., and Cramer, P. (2003) Cell 114, 347-357
11. Komissarova, N., and Kashlev, M. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 1755-1780
12. Nudler, E., Mustaev, A., Lukhtanov, E., and Goldfarb, A. (1997) Cell 89, 33-41
13. Sosunova, E., Sosunov, V., Kozlov, M., Nikiforov, V., Golfarb, A., and Mustaev, A. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 15469-15474
14. Borukhov, S., Sagitov, V., and Goldfarb, A. (1993) Cell 72, 459-466
15. Laptenko, O., Lee, J., Lomakin, I., and Borukhov, S. (2003) EMBO J. 22, 6322-6334
16. Hsu, L. M., Vo, N. V., and Chamberlin, M. J. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 11588-11592
17. Adelman, K., Yuzenkova, J., La Porta, A., Zenkin, N., Lee, J., Lis, J. T., Borukhov, S., Wang, M. D., and Severinov, K. (2004) Mol. Cell 14, 753-762
18. Artsimovitch, I., Patlan, V., Sekine, S., Vassylyeva, M. N., Hosaka, T., Ochi, K., Yokoyama, S., and Vassylyev, D. (2004) Cell 117, 299-310
19. Perederina, A., Svetlov, V., Vassylyeva, M. N., Tahirov, T. H., Yokoyama, S., Artsimovitch, I., and Vassylyev, D. G. (2004) Cell 118, 297-309
20. Paul, B. J., Barker, M. M., Ross, W., Schneider, D. A., Webb, C., Foster, J. W., and Gourse, R. L. (2004) Cell 118, 311-322
21. Paul, B. J., Berkmen, M. B., and Gourse, R. L. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 7823-7828
22. Paul, B. J., Ross, W., Gaal, T., and Gourse, R. L. (2004) Annu. Rev. Genet. 38, 749-770
23. Travers, A. A. (1980) J. Bacteriol. 141, 973-976
24. Miller, J. H. (1972) A Short Course in Bacterial Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
25. Xiao, H., Kalman, M., Ikehara, K., Zemel, S., Glaser, G., and Cashel, M. (1991) J. Biol. Chem. 266, 5980-5990
26. Sarmientos, P., Sylvester, J. E., Contente, S., and Cashel, M. (1983) Cell 32, 1337-1346
27. Churchward, G., Belin, D., and Nagamine, Y. (1984) Gene (Amst.) 31, 165-171
28. Brown, L., Gentry, D., Elliott, T., and Cashel, M. (2002) J. Bacteriol. 184, 4455-4465
29. Feng, G. H., Lee, D. N., Wang, D., Chan, C., and Landick, R. (1994) J. Biol. Chem. 269, 22282-22294
30. Potrykus, K., Wegrzyn, G., and Hernandez, V. J. (2004) J. Biol. Chem. 279, 19860-19866
31. Maitra, A., Shulgina, I., and Hernandez, V. J. (2005) Mol. Cell 17, 817-829
32. Hernandez, V. J., and Bremer, H. (1990) J. Biol. Chem. 265, 11605-11614
33. Vinella, D., Cashel, M., and D'Ari, R. (2000) Genetics 156, 1483-1492
34. Aviv, M., Giladi, H., Oppenheim, A. B., and Glaser, G. (1996) FEMS Microbiol. Lett. 140, 71-76
35. Gourse, R. L. (1988) Nucleic Acids Res. 16, 9789-9809
36. Krummel, B., and Chamberlin, M. J. (1992) J. Mol. Biol. 225, 239-250
37. Borukhov, S., Sagitov, V., Josaitis, C. A., Gourse, R. L., and Goldfarb, A. (1993) J. Biol. Chem. 268, 23477-23482
38. Sen, R., Nagai, H., and Shimamoto, N. (2001) Genes Cells 6, 389-401
39. Prather, D. M., Larschan, E., and Winston, F. (2005) Mol. Cell. Biol. 25, 2650-2659
40. Trautinger, B. W., Jaktaji, R. P., Rusakova, E., and Lloyd, R. G. (2005) Mol. Cell 19, 247-258
41. Susa, M., Kubori, T., and Shimamoto, N. (2006) Mol. Microbiol. 59, 1807-1817