메뉴 건너뛰기




Volumn 23, Issue 2, 2009, Pages 143-146

Promoter-specific control of E. coli RNA polymerase by ppGpp and a general transcription factor

Author keywords

DksA; PpGpp; Promoter; Ribosome synthesis; RNA polymerase; Transcription initiation

Indexed keywords

BINDING PROTEIN; NUCLEOTIDE; PROTEIN DKSA; RNA POLYMERASE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 58849151932     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.1770509     Document Type: Review
Times cited : (10)

References (35)
  • 2
    • 0035951301 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP
    • Barker, M.M., Gaal, T., and Gourse, R.L. 2001a. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. J. Mol. Biol. 305: 689-702.
    • (2001) J. Mol. Biol , vol.305 , pp. 689-702
    • Barker, M.M.1    Gaal, T.2    Gourse, R.L.3
  • 3
    • 0035951305 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
    • Barker, M.M., Gaal, T., Josaitis, C.A., and Gourse, R.L. 2001b. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J. Mol. Biol. 305: 673-688.
    • (2001) J. Mol. Biol , vol.305 , pp. 673-688
    • Barker, M.M.1    Gaal, T.2    Josaitis, C.A.3    Gourse, R.L.4
  • 4
    • 0032486142 scopus 로고    scopus 로고
    • RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters
    • Bartlett, M.S., Gaal, T., Ross, W., and Gourse, R.L. 1998. RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters. J. Mol. Biol. 279: 331-345.
    • (1998) J. Mol. Biol , vol.279 , pp. 331-345
    • Bartlett, M.S.1    Gaal, T.2    Ross, W.3    Gourse, R.L.4
  • 6
    • 0014478832 scopus 로고
    • Two compounds implicated in the function of the RC gene of Escherichia coli
    • Cashel, M. and Gallant, J. 1969. Two compounds implicated in the function of the RC gene of Escherichia coli. Nature 221: 838-841.
    • (1969) Nature , vol.221 , pp. 838-841
    • Cashel, M.1    Gallant, J.2
  • 7
    • 58849113914 scopus 로고    scopus 로고
    • Cashel, M., Gentry, D.R., Hernandez, J.V., and Vinella, D. 1996. Escherichia coli and Salmonella, cellular and molecular biology. In Escherichia coli and Salmonella, cellular and molecular biology (ed. F.C. Neidhardt), pp. 1458-1496. American Society for Microbiology, Washington, DC.
    • Cashel, M., Gentry, D.R., Hernandez, J.V., and Vinella, D. 1996. Escherichia coli and Salmonella, cellular and molecular biology. In Escherichia coli and Salmonella, cellular and molecular biology (ed. F.C. Neidhardt), pp. 1458-1496. American Society for Microbiology, Washington, DC.
  • 9
    • 0035312415 scopus 로고    scopus 로고
    • Bacterial RNA polymerase
    • Darst, S.A. 2001. Bacterial RNA polymerase. Curr. Opin. Struct. Biol. 11: 155-162.
    • (2001) Curr. Opin. Struct. Biol , vol.11 , pp. 155-162
    • Darst, S.A.1
  • 10
    • 38649092391 scopus 로고    scopus 로고
    • Transcription profiling of the stringent response in Escherichia coli
    • Durfee, T., Hansen, A.M., Zhi, H., Blattner, F.R., and Jin, D.J. 2008. Transcription profiling of the stringent response in Escherichia coli. J. Bacteriol. 190: 1084-1096.
    • (2008) J. Bacteriol , vol.190 , pp. 1084-1096
    • Durfee, T.1    Hansen, A.M.2    Zhi, H.3    Blattner, F.R.4    Jin, D.J.5
  • 11
    • 0015515019 scopus 로고
    • MSI and MSII made on ribosome in idling step of protein synthesis
    • Haseltine, W.A., Block, R., Gilbert, W., and Weber, K. 1972. MSI and MSII made on ribosome in idling step of protein synthesis. Nature 238: 381-384.
    • (1972) Nature , vol.238 , pp. 381-384
    • Haseltine, W.A.1    Block, R.2    Gilbert, W.3    Weber, K.4
  • 12
    • 45449099933 scopus 로고    scopus 로고
    • Advances in bacterial promoter recognition and its control by factors that do not bind DNA
    • Haugen, S.P., Ross, W., and Gourse, R.L. 2008. Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nat. Rev. Microbiol. 6: 507-519.
    • (2008) Nat. Rev. Microbiol , vol.6 , pp. 507-519
    • Haugen, S.P.1    Ross, W.2    Gourse, R.L.3
  • 13
    • 0029165036 scopus 로고
    • 70 mediate ppGpp-dependent functions in vivo
    • 70 mediate ppGpp-dependent functions in vivo. J. Mol. Biol. 252: 536-549.
    • (1995) J. Mol. Biol , vol.252 , pp. 536-549
    • Hernandez, V.J.1    Cashel, M.2
  • 14
    • 0037093379 scopus 로고    scopus 로고
    • Regulation of σ factor competition by the alarmone ppGpp
    • Jishage, M., Kvint, K., Shingler, V., and Nystrom, T. 2002. Regulation of σ factor competition by the alarmone ppGpp. Genes & Dev. 16: 1260-1270.
    • (2002) Genes & Dev , vol.16 , pp. 1260-1270
    • Jishage, M.1    Kvint, K.2    Shingler, V.3    Nystrom, T.4
  • 16
    • 0347536251 scopus 로고    scopus 로고
    • Isolation of RNA polymerase suppressors of a (p)ppGpp deficiency
    • Murphy, H. and Cashel, M. 2003. Isolation of RNA polymerase suppressors of a (p)ppGpp deficiency. Methods Enzymol. 371: 596-601.
    • (2003) Methods Enzymol , vol.371 , pp. 596-601
    • Murphy, H.1    Cashel, M.2
  • 17
    • 4043135220 scopus 로고    scopus 로고
    • Regulation of RNA polymerase through the secondary channel
    • Nickels, B.E. and Hochschild, A. 2004. Regulation of RNA polymerase through the secondary channel. Cell 118: 281-284.
    • (2004) Cell , vol.118 , pp. 281-284
    • Nickels, B.E.1    Hochschild, A.2
  • 18
    • 4043069926 scopus 로고    scopus 로고
    • DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
    • Paul, B.J., Barker, M.M., Ross, W., Schneider, D.A., Webb, C., Foster, J.W., and Gourse, R.L. 2004a. DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. Cell 118: 311-322.
    • (2004) Cell , vol.118 , pp. 311-322
    • Paul, B.J.1    Barker, M.M.2    Ross, W.3    Schneider, D.A.4    Webb, C.5    Foster, J.W.6    Gourse, R.L.7
  • 20
    • 20344363655 scopus 로고    scopus 로고
    • DksA potentiates direct activation of amino acid promoters by ppGpp
    • Paul, B.J., Berkmen, M.B., and Gourse, R.L. 2005. DksA potentiates direct activation of amino acid promoters by ppGpp. Proc. Natl. Acad. Sci. 102: 7823-7828.
    • (2005) Proc. Natl. Acad. Sci , vol.102 , pp. 7823-7828
    • Paul, B.J.1    Berkmen, M.B.2    Gourse, R.L.3
  • 21
    • 4043108470 scopus 로고    scopus 로고
    • Regulation through the secondary channel-structural framework for ppGpp-DksA synergism during transcription
    • Perederina, A., Svetlov, V., Vassylyeva, M.N., Tahirov, T.H., Yokoyama, S., Artsimovitch, I., and Vassylyev, D.G. 2004. Regulation through the secondary channel-structural framework for ppGpp-DksA synergism during transcription. Cell 118: 297-309.
    • (2004) Cell , vol.118 , pp. 297-309
    • Perederina, A.1    Svetlov, V.2    Vassylyeva, M.N.3    Tahirov, T.H.4    Yokoyama, S.5    Artsimovitch, I.6    Vassylyev, D.G.7
  • 22
    • 45449090551 scopus 로고    scopus 로고
    • p)ppGpp: Still magical? Annu
    • Potrykus, K. and Cashel, M. 2008. (p)ppGpp: Still magical? Annu. Rev. Microbiol. 62: 35-51.
    • (2008) Rev. Microbiol , vol.62 , pp. 35-51
    • Potrykus, K.1    Cashel, M.2
  • 23
    • 33744962968 scopus 로고    scopus 로고
    • Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA
    • Potrykus, K., Vinella, D., Murphy, H., Szalewska-Palasz, A., D'Ari, R., and Cashel, M. 2006. Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA. J. Biol. Chem. 281: 15238-15248.
    • (2006) J. Biol. Chem , vol.281 , pp. 15238-15248
    • Potrykus, K.1    Vinella, D.2    Murphy, H.3    Szalewska-Palasz, A.4    D'Ari, R.5    Cashel, M.6
  • 24
    • 33846604629 scopus 로고    scopus 로고
    • Effects of DksA, GreA, and GreB on transcription initiation: Insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase
    • Rutherford, S.T., Lemke, J.J., Vrentas, C.E., Gaal, T., Ross, W., and Gourse, R.L. 2007. Effects of DksA, GreA, and GreB on transcription initiation: Insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase. J. Mol. Biol. 366: 1243-1257.
    • (2007) J. Mol. Biol , vol.366 , pp. 1243-1257
    • Rutherford, S.T.1    Lemke, J.J.2    Vrentas, C.E.3    Gaal, T.4    Ross, W.5    Gourse, R.L.6
  • 25
    • 58849139777 scopus 로고    scopus 로고
    • Allosteric control of Escherichia coli rRNA promoter complexes by DksA
    • this issue, 10.1101/gad.1745409
    • Rutherford, S.T., Villers, C.L., Lee, J.-H., Ross, W., and Gourse, R.L. 2009. Allosteric control of Escherichia coli rRNA promoter complexes by DksA. Genes & Dev. (this issue). 10.1101/gad.1745409.
    • (2009) Genes & Dev
    • Rutherford, S.T.1    Villers, C.L.2    Lee, J.-H.3    Ross, W.4    Gourse, R.L.5
  • 27
    • 42149158392 scopus 로고    scopus 로고
    • Control of bacterial transcription, translation and replication by (p)ppGpp
    • Srivatsan, A. and Wang, J.D. 2008. Control of bacterial transcription, translation and replication by (p)ppGpp. Curr. Opin. Microbiol. 11: 100-105.
    • (2008) Curr. Opin. Microbiol , vol.11 , pp. 100-105
    • Srivatsan, A.1    Wang, J.D.2
  • 29
    • 0037121936 scopus 로고    scopus 로고
    • Modulation of DNA repair by mutations flanking the DNA channel through RNA polymerase
    • Trautinger, B.W. and Lloyd, R.G. 2002. Modulation of DNA repair by mutations flanking the DNA channel through RNA polymerase. EMBO J. 21: 6944-6953.
    • (2002) EMBO J , vol.21 , pp. 6944-6953
    • Trautinger, B.W.1    Lloyd, R.G.2
  • 30
    • 22544464455 scopus 로고    scopus 로고
    • RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription
    • Trautinger, B.W., Jaktaji, R.P., Rusakova, E., and Lloyd, R.G. 2005. RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription. Mol. Cell 19: 247-258.
    • (2005) Mol. Cell , vol.19 , pp. 247-258
    • Trautinger, B.W.1    Jaktaji, R.P.2    Rusakova, E.3    Lloyd, R.G.4
  • 33
    • 40049090539 scopus 로고    scopus 로고
    • Still looking for the magic spot: The crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation
    • Vrentas, C.E., Gaal, T., Berkmen, M.B., Rutherford, S.T., Haugen, S.P., Vassylyev, D.G., Ross, W., and Gourse, R.L. 2008. Still looking for the magic spot: The crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation. J. Mol. Biol. 377: 551-564.
    • (2008) J. Mol. Biol , vol.377 , pp. 551-564
    • Vrentas, C.E.1    Gaal, T.2    Berkmen, M.B.3    Rutherford, S.T.4    Haugen, S.P.5    Vassylyev, D.G.6    Ross, W.7    Gourse, R.L.8
  • 35
    • 0032539903 scopus 로고    scopus 로고
    • The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like 'stringent' RNA polymerases in Escherichia coli
    • Zhou, Y.N. and Jin, D.J. 1998. The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like 'stringent' RNA polymerases in Escherichia coli. Proc. Natl. Acad. Sci. 95: 2908-2913.
    • (1998) Proc. Natl. Acad. Sci , vol.95 , pp. 2908-2913
    • Zhou, Y.N.1    Jin, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.