Interfering RNA and HIV: Reciprocal interferences

PLoS Pathogens

Volumn 4, Issue 9, 2008, Pages

  Corbeau, Pierre ^a,b  

^a DEPARTMENT OF NEUROLOGY   (France)

^b INSTITUTE OF HUMAN GENETICS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; TRANSACTIVATOR PROTEIN; VIRUS RNA; SMALL INTERFERING RNA;

CYTOPATHOGENIC EFFECT; DNA POLYMORPHISM; DOWN REGULATION; GENE EXPRESSION; GENE TARGETING; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; NONHUMAN; PROTEIN PROCESSING; REVIEW; RNA INTERFERENCE; RNA SYNTHESIS; SEQUENCE HOMOLOGY; VIRUS REPLICATION; GENETICS;

HIV; HIV INFECTIONS; HUMANS; RNA INTERFERENCE; RNA, MESSENGER; RNA, SMALL INTERFERING; RNA, VIRAL;

EID: 53049101881     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1000162     Document Type: Review

References (53)

1. Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T (2001) New microRNAs from mouse and human. RNA 9: 175-179.
2. Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T (2001) Identification of novel genes coding for small expressed RNAs. Science 294: 853-858.
3. Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP (2003) Vertebrate microRNA genes. Science 299: 1540.
4. Lee Y, Jeon K, Lee JT, Kim S, Kim VN (2002) MicroRNA maturation: stepwise processing and subcellular localization. EMBO J 21: 4663-4670.
5. Lee JT, Ahn C, Han J, Chol H, Kim J, et al. (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425: 415-419.
6. Yi R, Qin Y, Macara IG, Cullen BR (2003) Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev 17: 3011-3016.
7. Hutvagner G, McLachlan J, Pasquinelli AE, Ballint AE, Tuschl T, et al. (2001) A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293: 834-838.
8. Liu J, Carmell MA, Rivas V, Marsden CG, Thompson JM, et al. (2004) Argonaute2 is the catalytic engine of mammalian RNAi. Science 305: 1437-1441.
9. Chendrimada TP, Gregory RI, Kumaraswamy E, Norman J, Cooch N, et al. (2005) TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature 436: 740-744.
10. Haase AD, Jaskiewicz L, Zhang H, Lainé S, Sack R, et al. (2005) TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing. EMBO Rep 6: 961-967.
11. Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, et al. (2005) Combinatorial microRNA target predictions. Nat Gen 37: 495-500.
12. Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, et al. (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414.
13. Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
14. Westerhout EM, Ooms M, Vink M, Das AT, Berkhout B (2005) HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. Nucleic Acids Res 33: 796-804.
15. Yoshinari K, Miyagishi M, Taira K (2004) Effects ln RNAi of the tight structure, sequence and position of the targeted region. Nucleic Acids Res 32: 691-699.
16. Chang J, Taylor JM (2003) Susceptibility of human hepatitis delta virus RNAs to small interfering RNA action. J Virol 77: 9728-9731.
17. Sullivan CS, Grundhoff AT, Tevethia S, Pipas JM, Ganem D (2005) SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells. Nature 435: 682-686.
18. Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, et al. (2005) Identification of microRNAs of the herpesvirus family. Nat Methods 2: 269-276.
19. Lin J, Cullen BR (2007) Analysis of the interaction of primate retroviruses with the human RNA interference machinery. J Virol 81: 12218-12226.
20. Omoto S, Ito M, Tsutsumi Y, Ichikawa Y, Ikuyama H, et al. (2004) HIV-1 nef suppression by virally encoded microRNA. Retrovirology 1: 44.
21. Omoto S, Fujii YR (2005) Regulation of human immunodeficiency virus 1 transcription by nef microRNA. J Gen Virol 86: 751-755.
22. Bennasser Y, Le S-Y, Benkirane M, Jeang K-T (2005) Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing. Immunity 22: 607-619.
23. Klase Z, Kale P, Winograd R, Gupta MV, Heydarian M, et al. (2007) HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the LTR. BMC Mol Biol 8: 63.
24. Ouellet DL, Plante I, Landry P, Barat C, Janelle ME, et al. (2008) Identification of functional microRNAs released through asymetrical processing of HIV-1 TAR element. Nucleic Acids Res 36: 2353-2365.
25. Stern-Ginossar N, Elefant N, Zimmermann A, Wolf DG, Saleh N, et al. (2007) Host immune system gene targeting by a viral miRNA. Science 317: 376-381.
26. Couturier JP, Root-Bernstein RS (2005) HIV may produce inhibitory microRNAs (miRNAs) that block production of CD28, CD4 and some interleukins. J Theor Biol 235: 169-184.
27. Bennasser Y, Le S-Y, Yeung ML, Jeang K-T (2004) HIV-1 encoded candidate micro-RNAs and their cellular targets. Retrovirology 1: 43.
28. Lecellier C-H, Dunoyer P, Arar K, Lehmann-Che J, Eyquem S, et al. (2005) A cellular microRNA mediates antiviral defense in human cells. Science 308: 557-560.
29. Jopling CL, Yi M, Lancaster AM, Lemon SM, Sarnow P (2005) Modulation of Hepatitis C virus RNA abundance by a liver-specific micro-RNA. Science 309: 1577-1581.
30. Hariharan M, Scaria V, Pillai B, Brahmachari SK (2005) Targets for human encoded microRNAs in HIV genes. Biochem Biophys Res Commun 337: 1214-1218.
31. Huang J, Wang F, Argyris E, Chen K, Liang Z, Tian H, et al. (2007) Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes. Nat Med 13: 1241-1247.
32. Triboulet R, Mari B, Lin Y-L, Chable-Bessia C, Bennasser Y, et al. (2007) Suppression of microRNA-silencing pathway by HIV-1 during virus replication. Science 315: 1579-1582.
33. Lu S, Cullen BR (2004) Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and microRNA biogenesis. J Virol 78: 12868-12876.
34. Gatignol A, Lainé S, Clerzius G (2005) Dual role of TRBP in HIV replication and RNA interference: viral diversion of a cellular pathway or evasion from antiviral immunity? Retrovirology 2: 65.
35. Christensen HS, Daher A, Soye KJ, Frankel LB, Alexander MR, et al. (2007) Small interfering RNA against the TAR RNA binding protein, TRBP, a Dicer cofactor, inhibit Human Immunodeficiency Virus type 1 Long Terminal Repeat expression and viral production. J Virol 81: 5121-5131.
36. Haasnoot J, de Vries W, Geutjes E-J, Prins M, de Haan P, et al. (2007) The Ebola virus VP35 protein is a suppressor of RNA silencing. PLoS Pathog 3: e86. doi:10.1371/journal.ppat.0030086.
37. Bazzini AA, Hopp HE, Beachy RN, Asurmendi S (2007) nfection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development. Proc Natl Acad Sci U S A 104: 12157-12162.
38. Iway N, Naraba H (2005) Poloymorphisms in human pre-miRNAs. Biochem Biophys Res Commun 331: 1439-1444.
39. O'Connell RM, Taganov KD, Boldin MP, Cheng G, Baltimore D (2007) MicroRNA-155 is induced during the macrophage inflammatory response. Proc Natl Acad Sci U S A 104: 1604-1609.
40. Meng F, Henson R, Wehbe-Janek H, Smith H, Ueno Y, et al. (2007) The microRNA let-7a modulates interleukin-6-dependent STAT-3 survival signaling in malignant human cholangiocytes. J Biol Chem 282: 8256-8264.
41. Rodriguez A, Vigorito E, Clare S, Warren MV, Couttet P, et al. (7) Requirement of bic/microRNA-155 for normal immune function. Science 316: 608-611.
42. Thai TH, Calado DP, Casola S, Ansel KM, Xiao C, et al. (2007) Regulation of the germinal center response by microRNA-155. Science 316: 604-608.
43. Xiao C, Calado DP, Galler G, Thai TH, Patterson HC, et al. (2007) miR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell 131: 146-159.
44. Li QJ, Chau J, Ebert PJ, Sylvester G, Min H, et al. (2007) miR-181a is an intrinsic modulator of T cell sensitivity and selection. Cell 129: 147-161.
45. Pedersen IM, Cheng G, Wieland S, Volinia S, Croce CM, et al. (2007) Interferon modulation of cellular microRNAs as an antiviral mechanism. Nature 449: 919-922.
46. Ambros V (2004) The functions of animal microRNAs. Nature 431: 350-355.
47. Krützfeldt J, Rajewsky N, Braich R, Rajeev KG, Tuschl T, et al. (2005) Silencing of microRNAs in vivo with "antagomirs". Nature 438: 685-689.
48. Zimmermann TS, Lee ACH, Akinc A, Bramlage B, Bumcrot B, et al. (2006) RNAi-mediated gene silencing in non-human primates. Nature 441: 111-114.
49. Morris KV, Chan SW, Jacobsen SE, Looney DJ (2004) Small interfering RNA-induced transcriptional gene silencing in human cells. Science 305: 1289-1292.
50. Castanotto D, Tommasi S, Li M, Li H, Yanow S, et al. (2005) Short hairpin RNA-directed cytosine (CpG) methylation of the RASSF1A promoter in HeLa cells. Mol Ther 12: 179-183.
51. Ting AH, Schuebel KE, Herman JG, Baylin SB (2005) Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation. Nat Gen 37: 906-910.
52. Volpe TA, Kidner C, Hall IM, Teng G, Grewal SIS, et al. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833-1837.
53. Suzuki K, Shijuuku T, Fukamachi T, Zaunders J, Guillemin G, et al. (2005) Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region. J RNAi Gene Silencing 1: 66-78.