Ion Soft Landing: Instrumentation, Phenomena, and Applications

Principles of Mass Spectrometry Applied to Biomolecules

Volumn , Issue , 2006, Pages 433-474

  Gologan, Bogdan ^a   Wiseman, Justin M ^a   Cooks, R Graham ^a  

^a PURDUE UNIVERSITY   (United States)

Author keywords

Ion soft landing instrumentation, phenomena, and applications; Ion soft landing past and current instrumentation; Ion surface collision phenomena

Indexed keywords

ION SOFT LANDINGS; ION-SURFACE COLLISIONS;

IONS;

EID: 52649087574     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/047005042X.ch12     Document Type: Chapter

References (134)

1. Ada ET, Kornienko O, Hanley L (1998): Chemical modification of polystyrene surfaces by low-energy polyatomic ion beams. J. Phys. Chem. B 102:3959-3966.
2. Alvarez J (2005): Distinct Collision Processes in Mass Spectrometry: Charge Inversion Reactions and Peptide Ion Soft-Landing, Purdue University.
3. Alvarez J, Cooks RG, Barlow SE, Gaspar DJ, Futrell JH, Laskin J (2005): Preparation and in situ characterization of surfaces by soft landing in a Fourier transform ion cyclotron resonance mass spectrometer, Anal. Chem. 77:3452-3460
4. Alvarez J, Futrell JH, Laskin J (2006): Soft-landing of peptides on to self-assembled monolayer surfaces, J. Phys. Chem. 110:1678-1687.
5. Ast T, Mabud MA, Cooks RG (1988): Reactive collisions of polyatomic ions at solid surfaces, Int. J. Mass Spectrom. Ion Proc. 82:131-150
6. Ast T, Riederer DE Jr, Miller SA, Morris M, Cooks RG (1993): Collisions of fluorocarbon ions at solid surfaces: Electronic excitation, surface-induced dissociation, and chemical sputtering. Org. Mass Spectrom. 28:1021-1033.
7. Ast T, Schey KL, Cooks RG (1990): Target effects in ion/surface collisions. J. Serb. Chem. Soc. 55:247-256.
8. Aston FW (1919): Neon lamps for stroboscopic work. Proc. Cambridge Phil. Soc. 19:300-306.
9. Baer T, Hase WL (1996): Unimolecular Reaction Dynamics: Theory and Experiments.
10. Benninghoven A, Rudenaurer FG, Werner HW (1982): Secondary Ion Mass Spectrometry: Basic Concepts, Instrumental Aspects, Applications, and Trends. Wiley, New York.
11. Bier ME, Vincenti M, Cooks RG (1987): Ion/surface collisions which lead to charge permutation. Rapid Commun. Mass Spectrom. 1:92-94.
12. Blake TA, Ouyang Z, Wiseman JM, Takats Z, Guymon AJ, Kothari S, Cooks RG (2004): Preparative linear ion trap mass spectrometer for separation and collection of purified proteins and peptides in arrays using ion soft landing. Anal. Chem. 76:6293-6305.
13. Bowie JH (2001): Charge-stripping of anions in the gas phase: The formation of interesting neutrals and cations. Int. J. Mass Spectrom. 212:249-265.
14. Bromann K, Felix C, Brune H, Harbich W, Monot R, Buttet J, Kern K (1996): Controlled deposition of size-selected silver nanoclusters. Science 274:956-958.
15. 6 during surface-induced dissociation at organic monolayers. J. Phys. Chem. 98:10913-10919.
16. Bursey MM (1990): Charge inversion of negative ions in tandem instruments. Mass Spectrom. Rev. 9:555-574.
17. Busch KL, Cooks RG (1982): Mass spectrometry of large, fragile, and involatile molecules. Science 218:247-254.
18. Busharov NP, Gorbatov EA, Gusev VM, Guseva MI, Martynenko YV (1976): Chemical sputtering of graphite by H+ions. J. Nucl. Mater. 63:230-234.
19. Chorush RA, Little DP, Beu CS, Wood TD, McLafferty FW (1995): Surface-induced dissociation of multiply-protonated proteins. Anal. Chem. 67:1042-1046.
20. Cooks RG (1995): Collision-induced dissociation: Readings and commentary. J. Mass Spectrom. 30:1215-1221.
21. Cooks RG, Ast T, Beynon JH (1975): Anomalous metastable peaks. Int. J. Mass Spectrom. Ion Physics 16:348-352.
22. Cooks RG, Ast T, Kralj B, Kramer V, Zigon D (1990a): Internal energy distributions deposited in doubly and singly charged tungsten hexacarbonyl ions generated by charge stripping, electron impact, and charge exchange. J. Am. Soc. Mass Spectrom. 1:16-27.
23. Cooks RG, Ast T, Mabud A (1990b): Collisions of polyatomic ions with surfaces. Int. J. Mass Spectrom. Ion Proc. 100:209-265.
24. Cooks RG, Ast T, Pradeep T,Wysocki V (1994): Reactions of ions with organic surfaces. Acc. Chem. Res. 27:316-323.
25. Cooks RG, Evans C,Wade N, Jo SC (2004): Collisions of organic ions at surfaces. Appl. Surf. Sci. 231-232:13-21.
26. Danell AS, Glish GL (2001): Charge permutation reactions in beam type mass spectrometers. Int. J. Mass Spectrom. 212:219-227.
27. + upon collision with a metal surface. Org. Mass Spectrom. 21:193-195.
28. Detter LD, Hand OW, Cooks RG, Walton RA (1988): Mass Spectrom. Rev. 7:465-502.
29. Dongre AR, Somogyi A,Wysocki VH (1996): Surface-induced dissociation: An effective tool to probe structure, energetics and fragmentation mechanisms of protonated peptides. J. Mass Spectrom. 31:339-350.
30. Douglas DJ, Shushan B (1982): Observation of charge inversion spectra with a triple quadrupole mass spectrometer system. Org. Mass Spectrom. 17:198-199
31. Evans C,Wade N, Pepi F, Strossman G, Schuerlein T, Cooks RG (2002): Surface modification and patterning using low-energy ion beams: Si-O bond formation at the vacuum/adsorbate interface. Anal. Chem. 74:317-323.
32. Farrar JM, Lee YT (1974): Chemical dynamics. Ann. Rev. Phys. Chem. 25:357-385.
33. Feng BB, Wunschel DS, Masselson CD, Pasa-Tolic L, Smith RD (1999): Retrieval of DNA using soft-landing after mass analysis by ESI-FTICR for enzymatic manipulation. J. Am. Chem. Soc. 121:8961-8962.
34. ForstW(1973): Physical Chemistry: a Series ofMonographs: Theory of Unimolecular Reactions.
35. Franchetti V, Solka BH, Baitinger WE, Amy JW, Cooks RG (1977): Soft landing of ions as a means of surface modification. Int. J. Mass Spectrom. Ion Phys. 23:29-35.
36. Fuerstenau SD, Benner WH, Thomas JJ, Brugidou C, Bothner B, Siuzdak G (2001): Mass spectrometry of an intact virus. Angew. Chem. Int. Ed. 40:542-544.
37. Garrison BJ, Delcorte A, Zhigilei L, Itina TE, Krantzman KD, Yingling YG, McQuaw CM, Smiley EJ,Winograd N (2003): Big molecule ejection-SIMS vs. MALDI. Appl. Surf. Sci. 203:69-71.
38. Geiger RJ, Melnyk MC, Busch KL, Bartlett MG (1999): Modifications to an analytical mass spectrometer for the soft-landing experiment. Int. J. Mass Spectrom. 183:415.
39. Gerrity DP, Valentini JJ (1985): J. Chem. Phys. 82:1323-1331.
40. Gillen KT, Riley C, Bernstei R (1969): Reactive scattering of K by Hbr, Dbr in crossed molecular beams-angular and velocity distributions of Kbr in laboratory and Cm systems. J. Chem. Phys. 50:4019-4223.
41. Gologan B, Green JR, Alvarez J, Laskin J, Cooks RG (2005): Ion/surface reactions and ion soft-landing. Phys. Chem. Chem. Phys. 7:1490-1500.
42. Gologan B, Takats Z, Alvarez J, Wiseman JM, Talaty N, Ouyang Z, Cooks RG (2004): Ion soft-landing into liquids: Protein identification, separation, and purification with retention of biological activity. J. Am. Soc. Mass Spectrom. 15:1874-1884.
43. Grill V, Shen J, Evans C, Cooks RG (2001): Collisions of ions with surfaces at chemically relevant energies: Instrumentation and phenomena. Rev. Sci. Instrum. 72:3149-3179.
44. Hager JW (2002): A new linear ion trap mass spectrometer. Rapid Commun. Mass Spectrom. 16:512-526.
45. Hand OW, Detter LD, Lammert SA, Cooks RG, Walton RA (1989): J. Am. Chem. Soc. (111):5577-5583.
46. Hayakawa S (2001): Internal energy distribution in charge inversion mass spectrometry using alkali metal targets. Int. J. Mass Spectrom. 212:229-247.
47. Hayakawa S (2004): Charge inversion mass spectrometry: Dissociation of resonantly neutralized molecules. J. Mass Spectrom. 39:111-135.
48. Hayakawa S, Endoh H, Arakawa K, Morishita N, Sugiura T (1995): Discrimination of C3H4+ isomeric ions by charge inversion mass spectrometry using an alkali metal target. Int. J. Mass Spectrom. Ion Proc. 151:89-95.
49. Heiland W, Taglauer E (1976): Low-energy ion scattering-elastic and inelastic effects. Nucl. Instrum. Meth. 132:535.
50. Hemberger PH, Nogar NS (1992): Laser photodissociation probe for ion tomography studies in a quadrupole ion-trap mass spectrometer. Chem. Phys. Lett. (191): 405-410.
51. Hendell E, Even U, Raz T, Levine RD (1995): Shattering of clusters upon surface impact-an experimental and theoretical study. Phys. Rev. Lett. 75:2670-2673.
52. Herman Z (2001): The crossed-beam scattering method in studies of ion-molecule reaction dynamics. Int. J. Mass Spectrom. 212:413-443.
53. Herman Z (2003): J. Am. Soc. Mass Spectrom. 14:1360-1372.
54. Herschbach DR (1966): Adv. Chem. Phys. 10:309
55. Herschbach DR (1987): Molecular-dynamics of elementary chemical-reactions-Nobel lecture, 8 December 1986. Chem. Scripta 27(3):327-347.
56. Hirschfelder J, Eyring H, Topley B (1936): J. Chem. Phys. 4:170-177.
57. Honig RE (1957): Sputtering of surfaces by positive ion beams of low energy. Bull. Am. Phys. Soc. 2:34-35.
58. Hornung G, Schalley CA, Dieterle M, Schroder D, Schwartz H (1997): A study of the gas-phase reactivity of neutral alkoxy radicals by mass spectrometry: a-Cleavages and Barton-type hydrogen migrations. Chem. Eur. J. 3:1866-1883.
59. Jo SC (2004): Surface-Induced Dissociation of Hyperthermal Ions at Self-Assembled Monolayers. Chemistry, PhD thesis, Purdue Univ. West Lafayette, IN.
60. Jo SC, Cooks RG (2003): Translational to vibrational energy conversion during surfaceinduced dissociation of n-butylbenzene molecular ions colliding at self-assembled monolayer surfaces. Eur. J. Mass Spectrom. 9:237-244.
61. Kaiser B, Bernhardt TM, Rademann K (1999): Interaction of mass selected antimony clusters with HOPG. Nucl. Instrum. Meth B. 157(1-4):155-161.
62. Kang H, Lee HW, Cho WR, Lee SM (1998): Molecular shape effect in polyatomic ion-surface scattering. Surface-induced dissociation of Fe(C5H5)(2)(+) and FeC5H5+ at Si(100). Chem. Phys. Lett. 292:213-217.
63. Krantzman KD, Fenno R, Decorte A, Garrison BJ (2003): Theoretical simulations of atomic and polyatomic bombardment of an organic overlayer on a metallic substrate. Nucl. Instrum. Meth. B. 202:201-205.
64. Kubista J, Dolejsek Z, Herman Z (1998): Energy partitioning in collisions of slow polyatomic ions with surfaces: Ethanol molecular ions on stainless steel surfaces. Eur. Mass Spectrom. 4:311-319
65. Laskin J, Bailey TH, Futrell JH (2003): Shattering of peptide ions on self-assembled monolayer surfaces. J. Am. Chem. Soc. 125:1625-1632.
66. Laskin J, Beck KM, Hache JJ, Futrell JH (2004): Surface-induced dissociation of ions produced by matrix-assisted laser desorption/ionization in a Fourier transform ion cyclotron resonance mass spectrometer. Anal. Chem. 76:351-356.
67. Laskin J, Denisov EV, Shukla AK, Balow SE, Futrell JH (2002): Surface-induced dissociation in a Fourier transform ion cyclotron resonance mass spectrometer: Instrument design and evaluation. Anal. Chem. 74:3255-3261.
68. Laskin J, Futrell JH (2003): Collisional activation of peptide ions in FT-ICR mass spectrometry. Mass Spectrom. Rev. 22:158-181.
69. Laurell T,Wallman L, Nilsson JJ (1999): Design and development of a silicon microfabricated flow-through dispenser for on-line picolitre sample handling. Micromech. Microeng. 9:369-376.
70. Lee YT (1987): Molecular-beam studies of elementary chemical processes. Science 236: 793-798.
71. Lee YT, Mcdonald JD, Lebreton PR, Herschba D (1969): Molecular beam reactive scattering apparatus with electron bombardment detector. Rev. Sci. Instrum. 40:1402-1408.
72. Levine RD, Bernstein RB (1987): Molecular Reaction Dynamics and Chemical Reactivity, Oxford Univ. Press, New York.
73. London F (1929): 2. Elektrochem. Angew. Phys. Chem. 35:552-555.
74. Luo H, Miller SA, Cooks RG, Pachuta SJ (1998): Soft landing of polyatomic ions for selective modification of fluorinated self-assembled monolayer surfaces. Int. J. Mass Spectrom. Ion Proc. 174:193-217.
75. Mabud A (1987). PhD thesis, Purdue Univ., West Lafayette, IN.
76. MacBeath G, Schreiber SL (2000): Printing proteins as microarrays for high-throughput function determination. Science 289:1760-1763.
77. Macdonald RG, Liu KP (1990): A crossed-beam study of the state-resolved dynamics of Ch(X 2-Pi)+D2.2. The isotopic exchange channel. J. Chem. Phys. 93:2443-2459
78. Martin BD, Gaber BP, Patterson CH, Turner DC (1998): Direct protein microarray fabrication using a hydrogel "stamper." Langmuir 14:3971-3975.
79. Mayer PS, Turecek F, Lee HN, Scheidmann AA, Olney TN, Schumacher F, Strop P, Smrcina M, Patek M, Schilin D (2005): Preparative separation of mixtures by mass spectrometry. Anal. Chem. 77:4378-4384.
80. McLuckey SA, Glish GL, Asano KG (1989): Anal. Chim. Acta. 225:25-35.
81. Meroueh SO, Wang YF, Hase WL (2002): Direct dynamics simulations of collision- and surface-induced dissociation of N-protonated glycine. Shattering fragmentation. J. Phys. Chem. A 106:9983-9992.
82. Miller SA, Luo H, Pachuta SJ, Cooks RG (1997): Soft-landing of polyatomic ions at fluorinated self-assembled monolayer surfaces. Science 275:1447-1450.
83. Morozov VN, Morozova TY (1999): Electrospray deposition as a method for mass fabrication of mono- and multicomponent microarrays of biological and biologically active substances. Anal. Chem. 71:3110-3117.
84. Nair H, Somogyi A, Wysocki VH (1996): Effect of alkyl substitution at the amide nitrogen on amide bond cleavage: Electrospray ionization/surface-induced dissociation fragmentation of substance P and two alkylated analogs. J. Mass Spectrom. 31: 1141-1148.
85. Nanita SC, Takats Z, Cooks RG, Myung SM, Clemmer DE (2004): Chiral enrichment of serine via formation, dissociation, and soft-landing of octameric cluster ions. J. Am. Soc. Mass Spectrom. 15:1360-1365.
86. Neuhauser D, Judson RS, Kouri DJ, Aldeman DE, Shafer NE, Kliner DAV, Zare RN (1992): State-to-state rates for the D+H2(V'1,J'1)-]Hd(V0,J0)+H reaction-predictions and measurements. Science 257:519-522.
87. Ouyang Z, Takats Z, Blake TA, Gologan B, Guymon AJ, Wiseman JM, Oliver JC, Davisson VJ, Cooks RG (2003): Preparing protein microarrays by soft-landing of mass-selected ions. Science 301:1351-1354.
88. Pachuta SJ, Cooks RG (1987): Mechanisms in molecular SIMS. Chem. Rev. 87:647-669
89. Pan P, McLuckey SA (2003): Electrospray ionization of protein mixtures at low pH. Anal. Chem. 75:1491-1499
90. Parker JH, Pimentel GC (1969): Vibrational energy distribution through chemical laser studies. I. Fluorine atoms plus hydrogen or methane. J. Chem. Phys. 51:91-96.
91. Polanyi JC (1987): Some concepts in reaction dynamics. Science 236:680-690
92. Polanyi JC, Tardy DC (1969): Energy distribution in exothermic reaction F+H2 and endothermic reaction Hf+H. J. Chem. Phys. 51:5717-5719
93. Postawa Z, Ludwig K, Piaskowy J, Krantzman K,Winograd N, Garrison BJ (2003): Molecular dynamic simulations of the sputtering of multilayer organic systems. Nucl. Instrum. Meth. B 202:168-174.
94. Pradeep T, Miller SA, Cooks RG (1993): Surface-induced dissociation from a liquid surface. J. Am. Soc. Mass Spectrom. 4:769-773.
95. Rhodes R (1986): The Making of the Atomic Bomb, New York.
96. Robinson PJ, Holbrook KA (1972): Unimolecular Reactions.
97. Roda A, Guardigli M, Russo C, Pasani P, Baraldini M(2000): Protein microdeposition using a conventional ink-jet printer. BioTechniques 28:492-496.
98. Rosenstock HM, Draxl K (1977): J. Phys. Chem. Ref. Data (6).
99. Rutherford E (1911): Proc. Manchester Lit. Phil. Soc. IV 55:18-20
100. Schaaff TG, Qu Y, Farrell N, Wysocki VH (1998): Investigation of the trans effect in the fragmentation of dinuclear platinum complexes by electrospray ionization surface-induced dissociation tandem mass spectrometry. J. Mass Spectrom. 33:436-443.
101. Schafer TP, Siska PE, Parson JM, Tully FP, Wong YC, Lee YT (1970): Crossed molecular beam study of F+D2. J. Chem. Phys. 53:3385-3387.
102. Schalley CA, Hornung G, Schroder D, Schwartz H (1998a): Mass spectrometric approaches to the reactivity of transient neutrals. Chem. Soc. Rev. 27:91-104.
103. Schalley CA, Hornung G, Schroder D, Schwartz H (1998b): Mass spectrometry as a tool to probe the gas-phase reactivity of neutral molecules. Int. J. Mass Spectrom. Ion Proc. 172:181-208.
104. Schroder D, Schwarz H, Dua S, Blanksby SJ, Bowie JH (1999): Mass spectrometric studies of the oxocarbons CnOn (n=3-6). Int. J. Mass Spectrom. 188:17-25.
105. Schultz DG, Hanley L (1998): Shattering of SiMe3+ during surface-induced dissociation. J. Chem. Phys. 109:10976-10983.
106. Schwartz JC, Senko MW, Syka JEP (2002): A two-dimensional quadrupole ion trap mass spectrometer. J. Am. Soc. Mass Spectrom. 13:659-669
107. Shen J, Evans C,Wade N, Cooks RG (1999a): Ion-ion collisions leading to formation of C-C bonds at surfaces: An interfacial Kolbe reaction. J. Am. Chem. Soc. 121:9762-9763.
108. Shen J, Yim YH, Feng B, Grill V, Evans C, Cooks RG (1999b): Soft landing of ions onto self-assembled hydrocarbon and fluorocarbon monolayer surfaces. Int. J. Mass Spectrom. 182/183:423-435.
109. Sigmund P (1973): Mechanism of surface micro-roughening by ion-bombardment. J. Mater. Sci. 8:1545-1553.
110. Siuzdak G, Bothner B, Yeager M, Brugidou C, Fauquet CM, Hoey K, Chang C (1996): Mass spectrometry and viral analysis. Chem. Biol. 3:45-48.
111. Siuzdak G, Hollenbeck T, Bothner B (1999): Preparative mass spectrometry with electrospray ionization. J. Mass Spectrom. 34:1087-1088.
112. Smith DP (1967): Scattering of low-energy noble gas ions from metal surfaces. J. Appl. Phys. 38:340-347.
113. Smith IWM (1980): Kinetics and Dynamics of Elementary Gas Reactions, Butterworths, London.
114. Smith LP, Parkins WE, Forrestor AT (1947): On the separation of isotopes in quantity by electromagnetic means. Phys. Rev. 72:989-1002.
115. Song KY, Meroueh O, Hase WL (2003): Dynamics of Cr(CO)(6)(+) collisions with hydrogenated surfaces. J. Chem. Phys. 118:2893-2902.
116. Stafford GC, Kelly PE (1984): Recent improvements in and analytical applications of advanced ion trap technology. Int. J. Mass Spectrom. Ion Phys. 60:85-98.
117. Takats Z, Wiseman JM, Gologan B, Cooks RG (2004a): Electrosonic spray ionization. A gentle technique for generating folded proteins and protein complexes in the gas phase and for studying ion-molecule reactions at atmospheric pressure. Anal. Chem. 76:4050-4058.
118. Takats Z, Wiseman JM, Gologan B, Cooks RG (2004b): Mass spectrometry sampling under ambient conditions with desorption electrospray ionization. Science 306:471-473.
119. Taylor EH, Datz S (1955): Study of chemical reaction mechanisms with molecular beams- the reaction of K with Hbr. J. Chem. Phys 23:1711-1718.
120. Thomson JJ (1913): Rays of Positive Electricity and Their Application to Chemical Analysis. Longmans Green, London.
121. Tu YY, Chuang TJ,Winters HF (1981): Chemical sputtering of fluorinated silicon. J. Vac. Sci. Technol. 18:357-358.
122. Vincenti M, Cooks RG (1988): Desorption due to charge exchange in low-energy collisions of organofluorine ions at solid surfaces. Org. Mass Spectrom. 23:317-326.
123. Wade N, Evans C, Jo SC, Cooks RG (2002): Silylation of an OH-terminated self-assembled monolayer surface through low-energy collisions of ions: A novel route to synthesis and patterning of surfaces. J. Mass Spectrom. 37:591-602.
124. Wade N, Evans C, Pepi F, Cooks RG (2000): Collisions of silylium cations with hydroxylterminated and other self-assembled monolayer surfaces: Reactions, dissociation, and surface characterization. J. Phys. Chem. B 104(47):11230-11237.
125. Wainhaus SB, Gislason EA, Hanley L (1997): J. Am. Chem. Soc. 119:4001-4007.
126. Winograd N (2005): The magic of cluster SIMS, Anal. Chem. 77:143A-149A.
127. Wijesundara MBJ, Hanley L, Ni BR, Sinnott SB (2000): Effects of unique ion chemistry on thin-film growth by plasma-surface interactions. Proc. Natl. Acad. Sci. USA 97:23-27.
128. Williams ER, Henry KD, McLafferty FW, Shabanowitz J, Hunt DF (1990): Surface-induced dissociation of peptide ions in Fourier-transform mass spectrometry. J. Am. Soc. Mass Spectrom. 1:413-416.
129. Winger BE, Laue HJ, Horning SR, Julian RK, Lammert SA, Riederer DE, Cooks RG (1992): Hybrid Beeq tandem mass-spectrometer for the study of ion surface collision processes. Rev. Sci. Instrum. 63:5613-5625.
130. Winters HF (1982): Chemical sputtering, a discussion of mechanisms. Rad. Effects 64:79-80
131. Wiseman JM, Puolitaival SM, Takats Z, Cooks RG, Caprioli RM (2005): Mass spectrometric profiling of biological tissue by using desorption electrospray ionization. Angew. Chem. Int. Ed. 44:7094-7097.
132. Yergey AL, Yergey AK (1997): Preparative scale mass spectrometry: A brief history of the calutron. J. Am. Soc. Mass Spectrom. 8:943-953.
133. Zare RN, Dagdigia PJ (1974): Tunable laser fluorescence method for product state analysis. Science 185:739-747.
134. Zhigilei LV, Leveugle E, Garrison BJ, Yingling YG, Zeifman MI (2003): Computer simulations of laser ablation of molecular substrates. Chem. Rev. 103:321-347.