-
1
-
-
0038337815
-
The calpain system
-
Goll, D. E.; Thompson, V. F.; Li, H.; Wei, W.; Cong, J. The calpain system. Physiol. Rev. 2003, 83, 731-801.
-
(2003)
Physiol. Rev
, vol.83
, pp. 731-801
-
-
Goll, D.E.1
Thompson, V.F.2
Li, H.3
Wei, W.4
Cong, J.5
-
2
-
-
33644897573
-
Calpain inhibition: A therapeutic strategy targeting multiple disease states
-
Carragher, N. O. Calpain inhibition: a therapeutic strategy targeting multiple disease states. Curr. Pharm. Des. 2006, 12, 615-638.
-
(2006)
Curr. Pharm. Des
, vol.12
, pp. 615-638
-
-
Carragher, N.O.1
-
3
-
-
0011232693
-
Development and therapeutic potential of calpain inhibitors
-
Wang, K. K.; Yuen, P. W. Development and therapeutic potential of calpain inhibitors. Adv. Pharmacol. 1997, 37, 117-152.
-
(1997)
Adv. Pharmacol
, vol.37
, pp. 117-152
-
-
Wang, K.K.1
Yuen, P.W.2
-
5
-
-
0033573028
-
2+-dependent protease activity and a novel mode of enzyme activation
-
2+-dependent protease activity and a novel mode of enzyme activation. EMBO J. 1999, 18, 6880-6889.
-
(1999)
EMBO J
, vol.18
, pp. 6880-6889
-
-
Hosfield, C.M.1
Elce, J.S.2
Davies, P.L.3
Jia, Z.4
-
7
-
-
0035861569
-
Dissociation and aggregation of calpain in the presence of calcium
-
Pal, G. P.; Elce, J. S.; Jia, Z. Dissociation and aggregation of calpain in the presence of calcium. J. Biol. Chem. 2001, 276, 47233-47238.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 47233-47238
-
-
Pal, G.P.1
Elce, J.S.2
Jia, Z.3
-
8
-
-
0037040423
-
2+ switch aligns the active site of calpain
-
2+ switch aligns the active site of calpain. Cell 2002, 108, 649-660.
-
(2002)
Cell
, vol.108
, pp. 649-660
-
-
Moldoveanu, T.1
Hosfield, C.M.2
Lim, D.3
Elce, J.S.4
Jia, Z.5
Davies, P.L.6
-
9
-
-
27844462036
-
Developments in the design and synthesis of calpain inhibitors
-
Neffe, A. T.; Abell, A. D. Developments in the design and synthesis of calpain inhibitors. Curr. Opin. Drug Discovery Dev. 2005, 8, 684-700.
-
(2005)
Curr. Opin. Drug Discovery Dev
, vol.8
, pp. 684-700
-
-
Neffe, A.T.1
Abell, A.D.2
-
10
-
-
33846268347
-
The crystal structures of human calpains 1 and 9 imply diverse mechanisms of action and auto-inhibition
-
Davis, T. L.; Walker, J. R., Jr.; Mackenzie, F.; Newman, E. M.; Dhe-Paganon, S. The crystal structures of human calpains 1 and 9 imply diverse mechanisms of action and auto-inhibition. J. Mol. Biol. 2007, 366, 216-229.
-
(2007)
J. Mol. Biol
, vol.366
, pp. 216-229
-
-
Davis, T.L.1
Walker Jr., J.R.2
Mackenzie, F.3
Newman, E.M.4
Dhe-Paganon, S.5
-
11
-
-
31044454547
-
Molecular mode of action of a covalently inhibiting peptidomimetic on the human calpain protease core
-
Li, Q.; Hanzlik, R. P.; Weaver, R. F.; Schonbrunn, E. Molecular mode of action of a covalently inhibiting peptidomimetic on the human calpain protease core. Biochemistry 2006, 45, 701-708.
-
(2006)
Biochemistry
, vol.45
, pp. 701-708
-
-
Li, Q.1
Hanzlik, R.P.2
Weaver, R.F.3
Schonbrunn, E.4
-
12
-
-
0033765620
-
A survey of calpain inhibitors
-
Donkor, I. O. A survey of calpain inhibitors. Curr. Med. Chem. 2000, 7, 1171-1188.
-
(2000)
Curr. Med. Chem
, vol.7
, pp. 1171-1188
-
-
Donkor, I.O.1
-
13
-
-
0036882396
-
Irreversible inhibitors of serine, cysteine, and threonine proteases
-
Powers, J. C.; Asgian, J. L.; Ekici, O. D.; James, K. E. Irreversible inhibitors of serine, cysteine, and threonine proteases. Chem. Rev. 2002, 102, 4639-4750.
-
(2002)
Chem. Rev
, vol.102
, pp. 4639-4750
-
-
Powers, J.C.1
Asgian, J.L.2
Ekici, O.D.3
James, K.E.4
-
14
-
-
28844491633
-
Determination of peptide substrate specificity for mu-calpain by a peptide library-based approach: The importance of primed side interactions
-
Cuerrier, D.; Moldoveanu, T.; Davies, P. L. Determination of peptide substrate specificity for mu-calpain by a peptide library-based approach: the importance of primed side interactions. J. Biol. Chem. 2005, 280, 40632-40641.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 40632-40641
-
-
Cuerrier, D.1
Moldoveanu, T.2
Davies, P.L.3
-
15
-
-
33745165901
-
Calpain inhibition by alpha-ketoamide and cyclic hemiacetal inhibitors revealed by X-ray crystallography
-
Cuerrier, D.; Moldoveanu, T.; Inoue, J.; Davies, P. L.; Campbell, R. L. Calpain inhibition by alpha-ketoamide and cyclic hemiacetal inhibitors revealed by X-ray crystallography. Biochemistry 2006, 45, 7446-7452.
-
(2006)
Biochemistry
, vol.45
, pp. 7446-7452
-
-
Cuerrier, D.1
Moldoveanu, T.2
Inoue, J.3
Davies, P.L.4
Campbell, R.L.5
-
16
-
-
33744961634
-
Substrate profiling of cysteine proteases using a combinatorial peptide library identifies functionally unique specificities
-
Choe, Y.; Leonetti, F.; Greenbaum, D. C.; Lecaille, F.; Bogyo, M.; Bromme, D.; Ellman, J. A.; Craik, C. S. Substrate profiling of cysteine proteases using a combinatorial peptide library identifies functionally unique specificities. J. Biol. Chem. 2006, 281, 12824-12832.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 12824-12832
-
-
Choe, Y.1
Leonetti, F.2
Greenbaum, D.C.3
Lecaille, F.4
Bogyo, M.5
Bromme, D.6
Ellman, J.A.7
Craik, C.S.8
-
17
-
-
0027424453
-
Peptide alpha-keto ester, alpha-keto amide, and alpha-keto acid inhibitors of calpains and other cysteine proteases
-
Li, Z.; Paul, G. S.; Golubski, Z. E.; Hori, H.; Tehrani, K.; Foreman, J. E.; Eveleth, D. D.; Bartus, R. T; Powers, J. C. Peptide alpha-keto ester, alpha-keto amide, and alpha-keto acid inhibitors of calpains and other cysteine proteases. J. Med. Chem. 1993, 36, 3472-3480.
-
(1993)
J. Med. Chem
, vol.36
, pp. 3472-3480
-
-
Li, Z.1
Paul, G.S.2
Golubski, Z.E.3
Hori, H.4
Tehrani, K.5
Foreman, J.E.6
Eveleth, D.D.7
Bartus, R.T.8
Powers, J.C.9
-
18
-
-
0033575514
-
P2-achiral, P′-extended alpha-ketoamide inhibitors of calpain I
-
Chatterjee, S.; Dunn, D.; Tao, M.; Wells, G.; Gu, Z. Q.; Bihovsky, R.; Ator, M. A.; Siman, R.; Mallamo, J. P. P2-achiral, P′-extended alpha-ketoamide inhibitors of calpain I. Bioorg. Med. Chem. Lett. 1999, 92371-2374.
-
(1999)
Bioorg. Med. Chem. Lett
, pp. 92371-92374
-
-
Chatterjee, S.1
Dunn, D.2
Tao, M.3
Wells, G.4
Gu, Z.Q.5
Bihovsky, R.6
Ator, M.A.7
Siman, R.8
Mallamo, J.P.9
-
19
-
-
0347361644
-
-
Donkor, I. O.; Han, J; Zheng, X. Design, synthesis, molecular modeling studies, and calpain inhibitory activity of novel alpha-ketoamides incorporating polar residues at the P1′-position. J. Med. Chem. 2004, 47, 72-79.
-
Donkor, I. O.; Han, J; Zheng, X. Design, synthesis, molecular modeling studies, and calpain inhibitory activity of novel alpha-ketoamides incorporating polar residues at the P1′-position. J. Med. Chem. 2004, 47, 72-79.
-
-
-
-
20
-
-
6344285318
-
Crystal structures of calpain-E64 and -leupeptin inhibitor complexes reveal mobile loops gating the active site
-
Moldoveanu, T.; Campbell, R. L.; Cuerrier, D.; Davies, P. L. Crystal structures of calpain-E64 and -leupeptin inhibitor complexes reveal mobile loops gating the active site. J. Mol. Biol. 2004, 343, 1313-1326.
-
(2004)
J. Mol. Biol
, vol.343
, pp. 1313-1326
-
-
Moldoveanu, T.1
Campbell, R.L.2
Cuerrier, D.3
Davies, P.L.4
-
21
-
-
0033578010
-
Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins
-
Ohndorf, U. M.; Rould, M. A.; He, Q.; Pabo, C. O.; Lippard, S. J. Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins. Nature 1999, 399, 708-712.
-
(1999)
Nature
, vol.399
, pp. 708-712
-
-
Ohndorf, U.M.1
Rould, M.A.2
He, Q.3
Pabo, C.O.4
Lippard, S.J.5
-
22
-
-
0031213649
-
The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions
-
Valegard, K.; Murray, J. B.; Stonehouse, N. J.; van den Worm, S.; Stockley, P. G.; Liljas, L. The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions. J. Mol. Biol. 1997, 270, 724-738.
-
(1997)
J. Mol. Biol
, vol.270
, pp. 724-738
-
-
Valegard, K.1
Murray, J.B.2
Stonehouse, N.J.3
van den Worm, S.4
Stockley, P.G.5
Liljas, L.6
-
23
-
-
0028004607
-
Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
-
Oubridge, C.; Ito, N.; Evans, P. R.; Teo, C. H.; Nagai, K. Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 1994, 372, 432-438.
-
(1994)
Nature
, vol.372
, pp. 432-438
-
-
Oubridge, C.1
Ito, N.2
Evans, P.R.3
Teo, C.H.4
Nagai, K.5
-
24
-
-
0032514483
-
Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA
-
Price, S. R.; Evans, P. R.; Nagal, K. Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA. Nature 1998, 394, 645-650.
-
(1998)
Nature
, vol.394
, pp. 645-650
-
-
Price, S.R.1
Evans, P.R.2
Nagal, K.3
-
25
-
-
0033560881
-
Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein
-
Handa, N.; Nureki, O.; Kurimoto, K.; Kim, I.; Sakamoto, H.; Shimura, Y.; Muto, Y.; Yokoyama, S. Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein. Nature 1999, 398, 579-585.
-
(1999)
Nature
, vol.398
, pp. 579-585
-
-
Handa, N.1
Nureki, O.2
Kurimoto, K.3
Kim, I.4
Sakamoto, H.5
Shimura, Y.6
Muto, Y.7
Yokoyama, S.8
-
26
-
-
0033615310
-
Recognition of an essential adenine at a protein-RNA interface: Comparison of the contributions of hydrogen bonds and a stacking arrangement
-
Nolan, S. J.; Shiels, J. C.; Tuite, J. B.; Cecere, K. L.; Baranger, A. M. Recognition of an essential adenine at a protein-RNA interface: comparison of the contributions of hydrogen bonds and a stacking arrangement. J. Am. Chem. Soc. 1999, 121, 8951-8952.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 8951-8952
-
-
Nolan, S.J.1
Shiels, J.C.2
Tuite, J.B.3
Cecere, K.L.4
Baranger, A.M.5
-
27
-
-
33750309040
-
Characterization of nucleobase-amino acid stacking interactions utilized by a DNA repair enzyme
-
Rutledge, L. R.; Campbell-Verduyn, L. S.; Hunter, K. C.; Wetmore, S. D. Characterization of nucleobase-amino acid stacking interactions utilized by a DNA repair enzyme. J. Phys. Chem. B 2006, 110, 19652-19663.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 19652-19663
-
-
Rutledge, L.R.1
Campbell-Verduyn, L.S.2
Hunter, K.C.3
Wetmore, S.D.4
-
28
-
-
34250900982
-
Base-excision repair of oxidative DNA damage
-
David, S. S.; O'Shea, V. L.; Kundu, S. Base-excision repair of oxidative DNA damage. Nature 2007, 447, 941-950.
-
(2007)
Nature
, vol.447
, pp. 941-950
-
-
David, S.S.1
O'Shea, V.L.2
Kundu, S.3
-
30
-
-
0029815897
-
Novel peptidyl α-keto amide inhibitors of calpains and other cysteine proteases
-
Li, Z.; Ortega-Vilain, A.-C.; Patil, G. S.; Chu, D.- L.; Foreman, J. E.; Eveleth, D. D.; Powers, J. C. Novel peptidyl α-keto amide inhibitors of calpains and other cysteine proteases. J. Med. Chem. 1996, 39, 4089-4098.
-
(1996)
J. Med. Chem
, vol.39
, pp. 4089-4098
-
-
Li, Z.1
Ortega-Vilain, A.-C.2
Patil, G.S.3
Chu, D.L.4
Foreman, J.E.5
Eveleth, D.D.6
Powers, J.C.7
-
31
-
-
0003076963
-
Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 ESF-EAMCB Newsl
-
Leslie, A. G. W. Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 ESF-EAMCB Newsl. Protein Crystallogr. 1992 26.
-
(1992)
Protein Crystallogr
, vol.26
-
-
Leslie, A.G.W.1
-
33
-
-
0028103275
-
number 4. The CCP4 suite: Programs for protein crystallography
-
Collaborative computational project
-
Collaborative computational project, number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr., Sect. D: Biol. Crystallogr. 1994, 50, 760-763.
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr
, vol.50
, pp. 760-763
-
-
-
34
-
-
0000560808
-
An automated program for molecular replacement
-
Vagin, A. T.; Teplyakov, A. An automated program for molecular replacement. J Appl. Crystallogr. 1997, 30, 1022-1025.
-
(1997)
J Appl. Crystallogr
, vol.30
, pp. 1022-1025
-
-
Vagin, A.T.1
Teplyakov, A.2
-
35
-
-
7544226311
-
PRODRG: A tool for high-throughput crystallography of protein-ligand complexes
-
Schuttelkopf, A. W.; van Aalten, D. M. PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 1355-1363.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr
, vol.60
, pp. 1355-1363
-
-
Schuttelkopf, A.W.1
van Aalten, D.M.2
-
36
-
-
0032897075
-
Efficient anisotropic refinement of macromolecular structures using FFT
-
Murshudov, G. N.; Vagin, A. A.; Lebedev, A.; Wilson, K. S.; Dodson, E. J. Efficient anisotropic refinement of macromolecular structures using FFT. Acta Crystallogr., Sect. D: Biol. Crystallogr 1999, 55, 247-255.
-
(1999)
Acta Crystallogr., Sect. D: Biol. Crystallogr
, vol.55
, pp. 247-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Lebedev, A.3
Wilson, K.S.4
Dodson, E.J.5
-
37
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P.; Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 2126-2132.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
38
-
-
51849120885
-
-
DeLano Scientific: Palo Alto, CA
-
DeLano, W. L. The PyMOL Molecular Graphics System; DeLano Scientific: Palo Alto, CA, 2003; http://www.pymol.org.
-
(2003)
-
-
DeLano, W.L.1
|