-
1
-
-
0032765083
-
Three-dimensional structure of the human TFIID-IIA-IIB complex
-
F. Andel, A.G. Ladurner, C. Inouye, R. Tjian, and E. Nogales Three-dimensional structure of the human TFIID-IIA-IIB complex Science 286 1999 2153 2156
-
(1999)
Science
, vol.286
, pp. 2153-2156
-
-
Andel, F.1
Ladurner, A.G.2
Inouye, C.3
Tjian, R.4
Nogales, E.5
-
2
-
-
0031473345
-
Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex
-
R. Beckmann, D. Bubeck, R. Grassucci, P. Penczek, Verschoor, G. Blobel, and J. Frank Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex Science 278 1997 2123 2126
-
(1997)
Science
, vol.278
, pp. 2123-2126
-
-
Beckmann, R.1
Bubeck, D.2
Grassucci, R.3
Penczek, P.4
Verschoor5
Blobel, G.6
Frank, J.7
-
3
-
-
0028832525
-
Three-dimensional reconstruction of Androctonus australis hemocyanin labeled with a monoclonal Fab fragment
-
N. Boisset, P. Penczek, J.C. Taveau, J. Lamy, and J. Frank Three-dimensional reconstruction of Androctonus australis hemocyanin labeled with a monoclonal Fab fragment J. Struct. Biol. 115 1995 16 29
-
(1995)
J. Struct. Biol.
, vol.115
, pp. 16-29
-
-
Boisset, N.1
Penczek, P.2
Taveau, J.C.3
Lamy, J.4
Frank, J.5
-
4
-
-
0036690340
-
Structure of yeast RNA polymerase II in solution: Implications for enzyme regulation and Interaction with promoter DNA
-
J.L. Craighead, W.H. Chang, and F.A. Asturias Structure of yeast RNA polymerase II in solution: implications for enzyme regulation and Interaction with promoter DNA Structure 10 2002 1117 1125
-
(2002)
Structure
, vol.10
, pp. 1117-1125
-
-
Craighead, J.L.1
Chang, W.H.2
Asturias, F.A.3
-
5
-
-
0029975088
-
SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields
-
J. Frank, M. Radermacher, P. Penczek, J. Zhu, Y. Li, M. Ladjadj, and A. Leith SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields J. Struct. Biol. 116 1996 190 199
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 190-199
-
-
Frank, J.1
Radermacher, M.2
Penczek, P.3
Zhu, J.4
Li, Y.5
Ladjadj, M.6
Leith, A.7
-
6
-
-
0034598935
-
Solution structure of the E. coli 70S ribosome at 11.5 Å resolution
-
I.S. Gabashvili, R.K. Agrawal, C.M. Spahn, R.A. Grassucci, D.I. Svergun, J. Frank, and P. Penczek Solution structure of the E. coli 70S ribosome at 11.5 Å resolution Cell 100 2000 537 549
-
(2000)
Cell
, vol.100
, pp. 537-549
-
-
Gabashvili, I.S.1
Agrawal, R.K.2
Spahn, C.M.3
Grassucci, R.A.4
Svergun, D.I.5
Frank, J.6
Penczek, P.7
-
8
-
-
0001259134
-
Three-dimensional reconstruction of arbitrarily oriented identical particles from their electron photomicrographs
-
A.B. Goncharov, B.K. Vainshtein, A.I. Ryskin, and A.A. Vagin Three-dimensional reconstruction of arbitrarily oriented identical particles from their electron photomicrographs Sov. Phys. Crystallogr. 32 1987 504 509
-
(1987)
Sov. Phys. Crystallogr.
, vol.32
, pp. 504-509
-
-
Goncharov, A.B.1
Vainshtein, B.K.2
Ryskin, A.I.3
Vagin, A.A.4
-
9
-
-
0032540273
-
Three-dimensional structure of bovine NADH: Ubiquinone oxidoreductase (complex I) at 22 Å in ice
-
N. Grigorieff Three-dimensional structure of bovine NADH: ubiquinone oxidoreductase (complex I) at 22 Å in ice J. Mol. Biol. 277 1998 1033 1046
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 1033-1046
-
-
Grigorieff, N.1
-
10
-
-
0001273835
-
Regularization methods for large-scale problems
-
M. Hanke, and P.C. Hansen Regularization methods for large-scale problems Surveys Math. Indust. 3 1993 253 315
-
(1993)
Surveys Math. Indust.
, vol.3
, pp. 253-315
-
-
Hanke, M.1
Hansen, P.C.2
-
12
-
-
0036289516
-
Efficiency of 2D alignment methods
-
L. Joyeux, and P.A. Penczek Efficiency of 2D alignment methods Ultramicroscopy 92 2002 33 46
-
(2002)
Ultramicroscopy
, vol.92
, pp. 33-46
-
-
Joyeux, L.1
Penczek, P.A.2
-
13
-
-
0000873069
-
A method for the solution of certain non-linear problems in least squares
-
K. Levenberg A method for the solution of certain non-linear problems in least squares Quart. Appl. Math. 2 1944 164 168
-
(1944)
Quart. Appl. Math.
, vol.2
, pp. 164-168
-
-
Levenberg, K.1
-
14
-
-
0000169232
-
An algorithm for least squares estimation of non-linear parameters
-
D. Marquardt An algorithm for least squares estimation of non-linear parameters SIAM J. Appl. Math. 11 1963 431 441
-
(1963)
SIAM J. Appl. Math.
, vol.11
, pp. 431-441
-
-
Marquardt, D.1
-
15
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
M.A. Marti-Renom, A.C. Stuart, A. Fiser, R. Sanchez, F. Melo, and A. Sali Comparative protein structure modeling of genes and genomes Annu. Rev. Biophys. Biomol. Struct. 29 2000 291 325
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
16
-
-
0001362410
-
The Levenberg-Marquardt algorithm: Implementation and theory
-
G. Watson (Ed.) No.630-Numerical Analysis
-
More, J.J., 1978. The Levenberg-Marquardt algorithm: implementation and theory, in: G. Watson (Ed.), Lecture Notes in Mathematics, No.630-Numerical Analysis, pp. 105-116
-
(1978)
Lecture Notes in Mathematics
, pp. 105-116
-
-
More, J.J.1
-
17
-
-
0035783172
-
Lumbricus terrestris hemoglobin-The architecture of linker chains and structural variation of the central toroid
-
F. Mouche, N. Boisset, and P.A. Penczek Lumbricus terrestris hemoglobin-The architecture of linker chains and structural variation of the central toroid J. Struct. Biol. 133 2001 176 192
-
(2001)
J. Struct. Biol.
, vol.133
, pp. 176-192
-
-
Mouche, F.1
Boisset, N.2
Penczek, P.A.3
-
18
-
-
0344552376
-
On the three-dimensional reconstruction of icosahedral particles
-
J. Navaza On the three-dimensional reconstruction of icosahedral particles J. Struct. Biol. 144 2003 13 23
-
(2003)
J. Struct. Biol.
, vol.144
, pp. 13-23
-
-
Navaza, J.1
-
19
-
-
84966262179
-
Updating Quasi-Newton matrices with limited storage
-
J. Norcedal Updating Quasi-Newton matrices with limited storage Math. Comp. 35 1980 773 782
-
(1980)
Math. Comp.
, vol.35
, pp. 773-782
-
-
Norcedal, J.1
-
20
-
-
84972047841
-
Theory of algorithms for unconstrained optimization
-
J. Norcedal Theory of algorithms for unconstrained optimization Acta Numerica 1 1991 199 242
-
(1991)
Acta Numerica
, vol.1
, pp. 199-242
-
-
Norcedal, J.1
-
23
-
-
0039943513
-
LSQR: An algorithm for sparse linear equations and sparse least squares
-
C.C. Paige, and M.A. Saunders LSQR: An algorithm for sparse linear equations and sparse least squares ACM Trans. Math. Software 8 1982 43 71
-
(1982)
ACM Trans. Math. Software
, vol.8
, pp. 43-71
-
-
Paige, C.C.1
Saunders, M.A.2
-
24
-
-
0026521233
-
Three-dimensional reconstruction of single particles embedded in ice
-
P. Penczek, M. Radermacher, and J. Frank Three-dimensional reconstruction of single particles embedded in ice Ultramicroscopy 40 1992 33 53
-
(1992)
Ultramicroscopy
, vol.40
, pp. 33-53
-
-
Penczek, P.1
Radermacher, M.2
Frank, J.3
-
25
-
-
0028393194
-
The ribosome at improved resolution: New techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles
-
P.A. Penczek, R.A. Grassucci, and J. Frank The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles Ultramicroscopy 53 1994 251 270
-
(1994)
Ultramicroscopy
, vol.53
, pp. 251-270
-
-
Penczek, P.A.1
Grassucci, R.A.2
Frank, J.3
-
26
-
-
2042540051
-
Gridding-based direct Fourier inversion of the three-dimensional ray transform
-
P.A. Penczek, R. Renka, and H. Schomberg Gridding-based direct Fourier inversion of the three-dimensional ray transform J. Opt. Soc. Am. A 21 2004 499 509
-
(2004)
J. Opt. Soc. Am. a
, vol.21
, pp. 499-509
-
-
Penczek, P.A.1
Renka, R.2
Schomberg, H.3
-
27
-
-
0030198739
-
A common-lines based method for determining orientations for N > 3 particle projections simultaneously
-
P.A. Penczek, J. Zhu, and J. Frank A common-lines based method for determining orientations for N > 3 particle projections simultaneously Ultramicroscopy 63 1996 205 218
-
(1996)
Ultramicroscopy
, vol.63
, pp. 205-218
-
-
Penczek, P.A.1
Zhu, J.2
Frank, J.3
-
28
-
-
0011982110
-
Three-dimensional reconstruction with contrast transfer function compensation from defocus series
-
P.A. Penczek, J. Zhu, R. Schröder, and J. Frank Three-dimensional reconstruction with contrast transfer function compensation from defocus series Scanning Microsc. Suppl. 11 1997 1 10
-
(1997)
Scanning Microsc. Suppl.
, vol.11
, pp. 1-10
-
-
Penczek, P.A.1
Zhu, J.2
Schröder, R.3
Frank, J.4
-
29
-
-
0024250191
-
Three-dimensional reconstruction from electron micrographs of disordered specimens
-
S.W. Provencher, and R.H. Vogel Three-dimensional reconstruction from electron micrographs of disordered specimens I. Method. Ultramicroscopy 25 1988 209 221
-
(1988)
I. Method. Ultramicroscopy
, vol.25
, pp. 209-221
-
-
Provencher, S.W.1
Vogel, R.H.2
-
30
-
-
0028375920
-
Three-dimensional reconstruction from random projections: Orientational alignment via Radon transforms
-
M. Radermacher Three-dimensional reconstruction from random projections: orientational alignment via Radon transforms Ultramicroscopy 53 1994 121 136
-
(1994)
Ultramicroscopy
, vol.53
, pp. 121-136
-
-
Radermacher, M.1
-
31
-
-
0035782681
-
The structure of the V(1)-ATPase determined by three-dimensional electron microscopy of single particles
-
M. Radermacher, T. Ruiz, H. Wieczorek, and G. Gruber The structure of the V(1)-ATPase determined by three-dimensional electron microscopy of single particles J. Struct. Biol. 135 2001 26 37
-
(2001)
J. Struct. Biol.
, vol.135
, pp. 26-37
-
-
Radermacher, M.1
Ruiz, T.2
Wieczorek, H.3
Gruber, G.4
-
32
-
-
84985231782
-
Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli
-
M. Radermacher, T. Wagenknecht, A. Verschoor, and J. Frank Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli J. Microsc. 146 1987 113 136
-
(1987)
J. Microsc.
, vol.146
, pp. 113-136
-
-
Radermacher, M.1
Wagenknecht, T.2
Verschoor, A.3
Frank, J.4
-
33
-
-
0019987933
-
The correlation averaging of a regularly arranged bacterial envelope protein
-
W.O. Saxton, and W. Baumeister The correlation averaging of a regularly arranged bacterial envelope protein J. Microsc. 127 1982 127 138
-
(1982)
J. Microsc.
, vol.127
, pp. 127-138
-
-
Saxton, W.O.1
Baumeister, W.2
-
34
-
-
1342309625
-
Transfer function restoration in 3D electron microscopy via iterative data refinement
-
C.O. Sorzano, R. Marabini, B. Herman, Y. Censor, and J.M. Carazo Transfer function restoration in 3D electron microscopy via iterative data refinement Phys. Med. Biol. 49 2004 509 522
-
(2004)
Phys. Med. Biol.
, vol.49
, pp. 509-522
-
-
Sorzano, C.O.1
Marabini, R.2
Herman, B.3
Censor, Y.4
Carazo, J.M.5
-
35
-
-
0023102907
-
Angular reconstitution: A posteriori assignment of projection directions for 3D reconstruction
-
M. van Heel Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction Ultramicroscopy 21 1987 111 124
-
(1987)
Ultramicroscopy
, vol.21
, pp. 111-124
-
-
Van Heel, M.1
-
36
-
-
0345414583
-
A statistical approach to computer processing of cryo-electron microscope images: Virion classification and 3-D reconstruction
-
Z.H. Yin, Y.L. Zheng, P.C. Doerschuk, P. Natarajan, and J.E. Johnson A statistical approach to computer processing of cryo-electron microscope images: virion classification and 3-D reconstruction J. Struct. Biol. 144 2003 24 50
-
(2003)
J. Struct. Biol.
, vol.144
, pp. 24-50
-
-
Yin, Z.H.1
Zheng, Y.L.2
Doerschuk, P.C.3
Natarajan, P.4
Johnson, J.E.5
-
37
-
-
0030960710
-
Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: Procedure and application to the 70S Escherichia coli ribosome
-
J. Zhu, P.A. Penczek, R. Schröder, and J. Frank Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome J. Struct. Biol. 118 1997 197 219
-
(1997)
J. Struct. Biol.
, vol.118
, pp. 197-219
-
-
Zhu, J.1
Penczek, P.A.2
Schröder, R.3
Frank, J.4
-
38
-
-
0041975895
-
Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations
-
J.P. Zubelli, R. Marabini, C.O. Sorzano, and G.T. Herman Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations Inverse Problems 19 2003 933 949
-
(2003)
Inverse Problems
, vol.19
, pp. 933-949
-
-
Zubelli, J.P.1
Marabini, R.2
Sorzano, C.O.3
Herman, G.T.4
|