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Volumn 3, Issue 1-2, 2008, Pages 285-302

A story of growing confusion: Genes and their regulation

Author keywords

Apoptosis control; Transcription interference; Transcriptome organization

Indexed keywords

GENOMIC DNA; MESSENGER RNA; MICRORNA; RIBONUCLEASE; SMALL NUCLEOLAR RNA; TRANSCRIPTOME; TRANSFER RNA; UNTRANSLATED RNA;

EID: 51349085880     PISSN: 17930480     EISSN: None     Source Type: Journal    
DOI: 10.1142/s1793048008000757     Document Type: Conference Paper
Times cited : (1)

References (99)
  • 1
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447:799-816, 2007.
    • (2007) Nature , vol.447 , pp. 799-816
  • 3
    • 33646490270 scopus 로고    scopus 로고
    • N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, P G Engström, B Lenhard, R N Aturaliya, S Batalov, K W Beisel, C J Bult, C F Fletcher, A R Forrest, M Furuno, D Hill, M Itoh, M Kanamori-Katayama, S Katayama, M Katoh, T Kawashima, J Quackenbush, T Ravasi, B Z Ring, K Shibata, K Sugiura, Y Takenaka, R D Teasdale, C A Wells, Y Zhu, C Kai, J Kawai, D A Hume, P Carninci, and Y Hayashizaki. Transcript annotation in FANTOM3: Mouse gene catalog based on physical cdnas. PLoS Genetics, 2:e62, 2006. doi:10.1371/journal.pgen.0020062.
    • N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, P G Engström, B Lenhard, R N Aturaliya, S Batalov, K W Beisel, C J Bult, C F Fletcher, A R Forrest, M Furuno, D Hill, M Itoh, M Kanamori-Katayama, S Katayama, M Katoh, T Kawashima, J Quackenbush, T Ravasi, B Z Ring, K Shibata, K Sugiura, Y Takenaka, R D Teasdale, C A Wells, Y Zhu, C Kai, J Kawai, D A Hume, P Carninci, and Y Hayashizaki. Transcript annotation in FANTOM3: Mouse gene catalog based on physical cdnas. PLoS Genetics, 2:e62, 2006. doi:10.1371/journal.pgen.0020062.
  • 8
    • 25444458283 scopus 로고    scopus 로고
    • Evidence for abundant transcription of non-coding regions in the sac charomyces cerevisiae genome
    • M Havilio, E Y Levanon, G Lerman, M Kupiec, and E Eisenberg. Evidence for abundant transcription of non-coding regions in the sac charomyces cerevisiae genome. BMC Genomics, 6:93, 2005.
    • (2005) BMC Genomics , vol.6 , pp. 93
    • Havilio, M.1    Levanon, E.Y.2    Lerman, G.3    Kupiec, M.4    Eisenberg, E.5
  • 10
  • 11
    • 34948831152 scopus 로고    scopus 로고
    • Noncoding but nonexpendable: Transcriptional regulation by large noncoding RNA in eukaryotes
    • O Yazgan and J E. Krebs. Noncoding but nonexpendable: Transcriptional regulation by large noncoding RNA in eukaryotes. Biochem Cell Biol. 85:484-496, 2007.
    • (2007) Biochem Cell Biol , vol.85 , pp. 484-496
    • Yazgan, O.1    Krebs, J.E.2
  • 12
    • 34548381748 scopus 로고    scopus 로고
    • Myc'ed messages: Myc induces transcription of E2F1 while inhibiting its translation via a microRNA polycistron
    • H A Coller, J J Forman, and A Legesse-Miller. "Myc'ed messages": myc induces transcription of E2F1 while inhibiting its translation via a microRNA polycistron. PLoS Genet., 3:e146, 2007.
    • (2007) PLoS Genet , vol.3
    • Coller, H.A.1    Forman, J.J.2    Legesse-Miller, A.3
  • 13
    • 4344677175 scopus 로고    scopus 로고
    • Common logic of transcription factor and microRNA action
    • Sep
    • O Hobert. Common logic of transcription factor and microRNA action. Trends Biochem Sci, 29(9):462-468, Sep 2004.
    • (2004) Trends Biochem Sci , vol.29 , Issue.9 , pp. 462-468
    • Hobert, O.1
  • 17
    • 33644864059 scopus 로고    scopus 로고
    • The expanding transcriptome: The genome as the 'Book of Sand'
    • L M Mendes Soares and J. Valcárcel. The expanding transcriptome: The genome as the 'Book of Sand'. EMBO J., 25:923-931, 2006.
    • (2006) EMBO J , vol.25 , pp. 923-931
    • Mendes Soares, L.M.1    Valcárcel, J.2
  • 18
    • 33745286231 scopus 로고    scopus 로고
    • TUF love for "junk" DNA
    • A T Willingham and T R Gingeras. TUF love for "junk" DNA. Cell, 125:1215-1220, 2006.
    • (2006) Cell , vol.125 , pp. 1215-1220
    • Willingham, A.T.1    Gingeras, T.R.2
  • 19
    • 34249721400 scopus 로고    scopus 로고
    • Constructing the landscape of the mammalian transcriptome
    • P Carninci. Constructing the landscape of the mammalian transcriptome. J. Exp. Biol., 210:1497-1506, 2007.
    • (2007) J. Exp. Biol , vol.210 , pp. 1497-1506
    • Carninci, P.1
  • 21
    • 24644519490 scopus 로고    scopus 로고
    • FANTOM Consortium; RJKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). The transcriptional landscape of the mammalian genome
    • P. Carninci, T. Kasukawa, S. Katayama, J. Gough, M.C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, and et al.; FANTOM Consortium; RJKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). The transcriptional landscape of the mammalian genome. Science, 309:1559-1563, 2005.
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1    Kasukawa, T.2    Katayama, S.3    Gough, J.4    Frith, M.C.5    Maeda, N.6    Oyama, R.7    Ravasi, T.8    Lenhard, B.9    Wells, C.10    and et, al.11
  • 22
    • 34249740942 scopus 로고    scopus 로고
    • A new paradigm for developmental biology
    • J. S. Mattick. A new paradigm for developmental biology. J. Exp. Biol., 210:1526-1547, 2007.
    • (2007) J. Exp. Biol , vol.210 , pp. 1526-1547
    • Mattick, J.S.1
  • 25
    • 55849137262 scopus 로고    scopus 로고
    • Extensive polycistronism and antisense transcription in the mammalian Hox clusters
    • G Mainguy, J Koster, J Woltering, H Jansen, and Durston A. Extensive polycistronism and antisense transcription in the mammalian Hox clusters. PLoS ONE, 2:e356, 2007.
    • (2007) PLoS ONE , vol.2
    • Mainguy, G.1    Koster, J.2    Woltering, J.3    Jansen, H.4    Durston, A.5
  • 27
    • 19444377759 scopus 로고    scopus 로고
    • Transcriptional interference - a crash course
    • K E Shearwin, B P Callen, and J B. Egan. Transcriptional interference - a crash course. Trends Genet., 21:339-345, 2005.
    • (2005) Trends Genet , vol.21 , pp. 339-345
    • Shearwin, K.E.1    Callen, B.P.2    Egan, J.B.3
  • 28
    • 34548555700 scopus 로고    scopus 로고
    • Transcriptional interference: An unexpected layer of complexity in gene regulation
    • A Mazo, J W Hodgson, S Petruk, Y Sedkov, and H W Brock. Transcriptional interference: An unexpected layer of complexity in gene regulation. J Cell Sci., 120:2755-2761, 2007.
    • (2007) J Cell Sci , vol.120 , pp. 2755-2761
    • Mazo, A.1    Hodgson, J.W.2    Petruk, S.3    Sedkov, Y.4    Brock, H.W.5
  • 29
    • 24644472515 scopus 로고    scopus 로고
    • S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, H Nishida, C C Yap, M Suzuki, J Kawai, H Suzuki, P Carninci, Y Hayashizaki, C Wells, M Frith, T Ravasi, K C Pang, J Hallinan, J Mattick, D A Hume, L Lipovich, S Batalov, P G Engström, Y Mizuno, M A Faghihi, A Sandelin, A M Chalk, S Mottagui-Tabar, Z Liang, B Lenhard, C Wahlestedt, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), and FANTOM Consortium. Antisense transcription in the mammalian transcriptome. Science, 309:1564-1556, 2005.
    • S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, H Nishida, C C Yap, M Suzuki, J Kawai, H Suzuki, P Carninci, Y Hayashizaki, C Wells, M Frith, T Ravasi, K C Pang, J Hallinan, J Mattick, D A Hume, L Lipovich, S Batalov, P G Engström, Y Mizuno, M A Faghihi, A Sandelin, A M Chalk, S Mottagui-Tabar, Z Liang, B Lenhard, C Wahlestedt, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), and FANTOM Consortium. Antisense transcription in the mammalian transcriptome. Science, 309:1564-1556, 2005.
  • 30
    • 23844548542 scopus 로고    scopus 로고
    • The relationship between chromatin structure and transcriptional activity in mammalian genomes
    • Jul
    • N Gilbert and B Ramsahoye. The relationship between chromatin structure and transcriptional activity in mammalian genomes. Brief Funct Genomic Proteomic, 4(2):129-142, Jul 2005.
    • (2005) Brief Funct Genomic Proteomic , vol.4 , Issue.2 , pp. 129-142
    • Gilbert, N.1    Ramsahoye, B.2
  • 31
    • 33751536642 scopus 로고    scopus 로고
    • Genome-wide natural anti-sense transcription: Coupling its regulation to its different regulatory mechanisms
    • 7:1216-1222, 2006
    • Michal Lapidort and Yizhak Pilpel. Genome-wide natural anti-sense transcription: Coupling its regulation to its different regulatory mechanisms. EMBO Rep., 7:1216-1222, 2006.
    • EMBO Rep
    • Lapidort, M.1    Pilpel, Y.2
  • 32
    • 34547623918 scopus 로고    scopus 로고
    • Quality control of eukaryotic mRNA: Safeguarding cells from abnormal mRNA function
    • O Isken and L E Maquat. Quality control of eukaryotic mRNA: Safeguarding cells from abnormal mRNA function. Genes Dev., 21:1833-1856, 2007.
    • (2007) Genes Dev , vol.21 , pp. 1833-1856
    • Isken, O.1    Maquat, L.E.2
  • 36
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • J G Ruby, C Jan, C Player, M J Axtell, W Lee, C Nusbaum, H Ge, and David P. Bartel. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell, 127:1193-1207, 2006.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5    Nusbaum, C.6    Ge, H.7    Bartel, D.P.8
  • 38
    • 34250331200 scopus 로고    scopus 로고
    • Stefan Washietl, Jakob S. Pedersen, Jan O. Korbel, Andreas Gruber, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Claudia Stocsits, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E. Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R. Gingeras, Roderic Guigó, Michael Snyder, Mark B. Gerstein, Alexandre Reymond, Ivo L. Hofacker, and Peter F. Stadler. Structured RNAs in the ENCODE selected regions of the human genome. Gen. Res., 17:852-864, 2007.
    • Stefan Washietl, Jakob S. Pedersen, Jan O. Korbel, Andreas Gruber, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Claudia Stocsits, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E. Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R. Gingeras, Roderic Guigó, Michael Snyder, Mark B. Gerstein, Alexandre Reymond, Ivo L. Hofacker, and Peter F. Stadler. Structured RNAs in the ENCODE selected regions of the human genome. Gen. Res., 17:852-864, 2007.
  • 40
    • 33745590704 scopus 로고    scopus 로고
    • Thousands of corresponding human an mouse genomic regions unalignable in primary sequece contain common RNA structure
    • Elfar Torarinsson, Milena Sawera, Jakob Havgaard, Merete Fredholm, and Jan Gorodkin. Thousands of corresponding human an mouse genomic regions unalignable in primary sequece contain common RNA structure. Genome Res., 16:885-889, 2006.
    • (2006) Genome Res , vol.16 , pp. 885-889
    • Torarinsson, E.1    Sawera, M.2    Havgaard, J.3    Fredholm, M.4    Gorodkin, J.5
  • 41
    • 34548092794 scopus 로고    scopus 로고
    • Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes
    • C Weile, P P Gardner, M M Hedegaard, and J Vinther. Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes. BMC Genomics, 8:244, 2007.
    • (2007) BMC Genomics , vol.8 , pp. 244
    • Weile, C.1    Gardner, P.P.2    Hedegaard, M.M.3    Vinther, J.4
  • 43
    • 34250308428 scopus 로고    scopus 로고
    • Origin of phenotypes: Genes and transcripts
    • Thomas R. Gingeras. Origin of phenotypes: Genes and transcripts. Genome Res., 17:682-690, 2007.
    • (2007) Genome Res , vol.17 , pp. 682-690
    • Gingeras, T.R.1
  • 44
    • 34548605504 scopus 로고    scopus 로고
    • Steroid receptor RNA activator (SRA1): Unusual bifaceted gene products with suspected relevance to breast cancer
    • Etienne Leygue. Steroid receptor RNA activator (SRA1): Unusual bifaceted gene products with suspected relevance to breast cancer. Nucl. Recep. Signaling, 5:e006, 2007.
    • (2007) Nucl. Recep. Signaling , vol.5
    • Leygue, E.1
  • 45
    • 48549107143 scopus 로고    scopus 로고
    • Bidirectional expression of the SCA8 expansion mutation: One mutation, two genes
    • doi:10.1080/14734220701413781
    • Y Ikeda, R S Daughters, and L P Ranum. Bidirectional expression of the SCA8 expansion mutation: One mutation, two genes. Cerebellum, 2007. doi:10.1080/14734220701413781.
    • (2007) Cerebellum
    • Ikeda, Y.1    Daughters, R.S.2    Ranum, L.P.3
  • 46
    • 33749034196 scopus 로고    scopus 로고
    • A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
    • K Salehi-Ashtiani, A Lupták, A Litovchick, and J W Szostak. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science, 313:1788-1792, 2006.
    • (2006) Science , vol.313 , pp. 1788-1792
    • Salehi-Ashtiani, K.1    Lupták, A.2    Litovchick, A.3    Szostak, J.W.4
  • 48
    • 34248212337 scopus 로고    scopus 로고
    • Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human
    • Z Zhang, A W Pang, and M. Gerstein. Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human. BMC Evol Biol., 7 (Suppl 1):S14, 2007.
    • (2007) BMC Evol Biol , vol.7 , Issue.SUPPL. 1
    • Zhang, Z.1    Pang, A.W.2    Gerstein, M.3
  • 49
    • 34247598415 scopus 로고    scopus 로고
    • Sebastian Will, Kristin Missal, Ivo L. Hofacker, Peter F. Stadler, and Rolf Backofen. Inferring non-coding RNA families and classes by means of genome-scale structure-based clustering. PLoS Comp. Biol., 3:e65, 2007.
    • Sebastian Will, Kristin Missal, Ivo L. Hofacker, Peter F. Stadler, and Rolf Backofen. Inferring non-coding RNA families and classes by means of genome-scale structure-based clustering. PLoS Comp. Biol., 3:e65, 2007.
  • 50
    • 34250744007 scopus 로고    scopus 로고
    • Dominic Rose Rose, Jörg Hackermüller, Stefan Washietl, Sven Findeiß, Kristin Reiche, Jana Hertel, Peter F. Stadler, and Sonja J. Prohaska. Computational RNomics of drosophilids. BMC Genomics, 2007. accepted.
    • Dominic Rose Rose, Jörg Hackermüller, Stefan Washietl, Sven Findeiß, Kristin Reiche, Jana Hertel, Peter F. Stadler, and Sonja J. Prohaska. Computational RNomics of drosophilids. BMC Genomics, 2007. accepted.
  • 51
    • 33847183553 scopus 로고    scopus 로고
    • The Athanasius F. Bompfünewerer RNA Consortium:, Rolf Backofen, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L. Hofacker, L. Kristin Missal, Sonja J. Mosig, Axel Prohaska, Domininc Rose, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, and Will Sebastian. RNAs everywhere: Genome-wide annotation of structured RNAs. J. Exp. Zool. B: Mol. Dev. Evol., 308B:1-25, 2007.
    • The Athanasius F. Bompfünewerer RNA Consortium:, Rolf Backofen, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L. Hofacker, L. Kristin Missal, Sonja J. Mosig, Axel Prohaska, Domininc Rose, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, and Will Sebastian. RNAs everywhere: Genome-wide annotation of structured RNAs. J. Exp. Zool. B: Mol. Dev. Evol., 308B:1-25, 2007.
  • 52
    • 27944464131 scopus 로고    scopus 로고
    • Mapping of conserved RNA secondary structures predicts thousands of functional non-coding RNAs in the human genome
    • Stefan Washietl, Ivo L. Hofacker, Melanie Lukasser, Alexander Hüttenhofer, and Peter F. Stadler. Mapping of conserved RNA secondary structures predicts thousands of functional non-coding RNAs in the human genome. Nature Biotech., 23:1383-1390, 2005.
    • (2005) Nature Biotech , vol.23 , pp. 1383-1390
    • Washietl, S.1    Hofacker, I.L.2    Lukasser, M.3    Hüttenhofer, A.4    Stadler, P.F.5
  • 53
    • 0037143606 scopus 로고    scopus 로고
    • Oligonucleotide directed misfolding of RNA inhibits Candida albicans group I intron splicing
    • Jessica L. Childs, Matthew D. Disney, and Douglas H. Turner. Oligonucleotide directed misfolding of RNA inhibits Candida albicans group I intron splicing. Proc. Natl. Acad. Sci. USA, 99:11091-11096, 2002.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11091-11096
    • Childs, J.L.1    Disney, M.D.2    Turner, D.H.3
  • 54
    • 5644245066 scopus 로고    scopus 로고
    • mRNA openers and closers: A methodology to modulate AU-rich element controlled mRNA stability by a molecular switch in mRNA conformation
    • Nicole-Claudia Meisner, Jörg Hackermüller, Volker Uhl, Andras Aszódi, Markus Jaritz, and Manfred Auer. mRNA openers and closers: A methodology to modulate AU-rich element controlled mRNA stability by a molecular switch in mRNA conformation. Chembiochem., 5:1432-1447, 2004.
    • (2004) Chembiochem , vol.5 , pp. 1432-1447
    • Meisner, N.-C.1    Hackermüller, J.2    Uhl, V.3    Aszódi, A.4    Jaritz, M.5    Auer, M.6
  • 55
    • 3042632236 scopus 로고    scopus 로고
    • RNA stem-loop enhanced expression of previously non-expressible genes
    • 32:9/e78, doi10.1093/nar/gnh076
    • Michael Paulus, Martin Haslbeck, and Manfred Watzele. RNA stem-loop enhanced expression of previously non-expressible genes. Nucl. Acids Res., 32:9/e78, 2004. doi10.1093/nar/gnh076.
    • (2004) Nucl. Acids Res
    • Paulus, M.1    Haslbeck, M.2    Watzele, M.3
  • 56
    • 13444305211 scopus 로고    scopus 로고
    • The effect of RNA secondary structures on RNA-ligand binding and the modifier RNA mechanism: A quantitative model
    • Jörg Hackermüller, Nicole-Claudia Meisner, Manfred Auer, Markus Jaritz, and Peter F. Stadler. The effect of RNA secondary structures on RNA-ligand binding and the modifier RNA mechanism: A quantitative model. Gene, 345:3-12, 2005.
    • (2005) Gene , vol.345 , pp. 3-12
    • Hackermüller, J.1    Meisner, N.-C.2    Auer, M.3    Jaritz, M.4    Stadler, P.F.5
  • 57
    • 23244467882 scopus 로고    scopus 로고
    • Rewiring of the yeast transcriptional network through the evolution of motif usage
    • Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, Itai Yanai, Mark McClellan, Judith Berman, and Naama Barkai. Rewiring of the yeast transcriptional network through the evolution of motif usage. Science 309:938-940, 2005.
    • (2005) Science , vol.309 , pp. 938-940
    • Ihmels, J.1    Bergmann, S.2    Gerami-Nejad, M.3    Yanai, I.4    McClellan, M.5    Berman, J.6    Barkai, N.7
  • 59
    • 0035177003 scopus 로고    scopus 로고
    • The TRANSPATH signal transduction database: A knowledge base on signal transduction networks
    • F Schacherer, C Choi, U Götze, M, Krull, S Pistor, and E Wingender. The TRANSPATH signal transduction database: A knowledge base on signal transduction networks. Bioinformatics, 17:1053-1057, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 1053-1057
    • Schacherer, F.1    Choi, C.2    Götze, U.3    Krull, M.4    Pistor, S.5    Wingender, E.6
  • 61
    • 24744440117 scopus 로고    scopus 로고
    • Non-coding RNAs: New players in eukaryotic biology
    • F F Costa. Non-coding RNAs: New players in eukaryotic biology. Gene 357(2):83-94, 2005.
    • (2005) Gene , vol.357 , Issue.2 , pp. 83-94
    • Costa, F.F.1
  • 62
    • 33846169089 scopus 로고    scopus 로고
    • Eukaryotic regulatory RNAs: An answer to the 'genome complexity' conundrum
    • K V Prasanth and D L Spector. Eukaryotic regulatory RNAs: An answer to the 'genome complexity' conundrum. Genes Dev., 21:11-42, 2007.
    • (2007) Genes Dev , vol.21 , pp. 11-42
    • Prasanth, K.V.1    Spector, D.L.2
  • 64
    • 34547626629 scopus 로고    scopus 로고
    • Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells
    • J Han, D Kim, and K V. Morris. Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells. Proc. Natl. Acad. Sci. USA, 104:12422-12427, 2007.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 12422-12427
    • Han, J.1    Kim, D.2    Morris, K.V.3
  • 65
    • 0036796374 scopus 로고    scopus 로고
    • Having it both ways: Transcription factors that bind dna and rna
    • Oct
    • L A Cassiday and L J Maher. Having it both ways: Transcription factors that bind dna and rna. Nucleic Acids Res, 30(19):4118-4126, Oct 2002.
    • (2002) Nucleic Acids Res , vol.30 , Issue.19 , pp. 4118-4126
    • Cassiday, L.A.1    Maher, L.J.2
  • 66
    • 33744804277 scopus 로고    scopus 로고
    • The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultra conserved region and functions as a DlX-2 transcriptional coactivator
    • J. Feng, C. Bi, B. S. Clark, R. Mady, P. Shah, and J. D. Kohtz. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultra conserved region and functions as a DlX-2 transcriptional coactivator. Genes Dev, 20:1470-1484, 2006.
    • (2006) Genes Dev , vol.20 , pp. 1470-1484
    • Feng, J.1    Bi, C.2    Clark, B.S.3    Mady, R.4    Shah, P.5    Kohtz, J.D.6
  • 67
  • 68
    • 33846032330 scopus 로고    scopus 로고
    • K Ng, D Pullirsch, M Leeb, and A. Wutz. Xist and the order of silencing. EMBO Rep., 8:34-39, 2007.
    • K Ng, D Pullirsch, M Leeb, and A. Wutz. Xist and the order of silencing. EMBO Rep., 8:34-39, 2007.
  • 69
    • 1942535718 scopus 로고    scopus 로고
    • Small RNAs in genome rearrangement in tetrahymena
    • K Mochizuki and M A Gorovsky. Small RNAs in genome rearrangement in tetrahymena. Curr Opin Genet Dev., 14:181-187, 2004.
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 181-187
    • Mochizuki, K.1    Gorovsky, M.A.2
  • 70
    • 15844417569 scopus 로고    scopus 로고
    • Genome-wide non-mendelian inheritance of extra-genomic information in arabidopsis
    • Mar
    • S J Lolle, J L Victor, J M Young, and R E Pruitt. Genome-wide non-mendelian inheritance of extra-genomic information in arabidopsis. Nature, 434(7032):505-509, Mar 2005.
    • (2005) Nature , vol.434 , Issue.7032 , pp. 505-509
    • Lolle, S.J.1    Victor, J.L.2    Young, J.M.3    Pruitt, R.E.4
  • 71
    • 33747853568 scopus 로고    scopus 로고
    • RNA at the steering wheel
    • S Schmitt and R Paro. RNA at the steering wheel. Genome Biol, 7(5):218-218, 2006.
    • (2006) Genome Biol , vol.7 , Issue.5 , pp. 218-218
    • Schmitt, S.1    Paro, R.2
  • 72
    • 33644514069 scopus 로고    scopus 로고
    • Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax
    • T Sanchez-Elsner, D Gou, E Kremmer, and F. Sauer. Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax. Science, 311:1118-1123, 2006.
    • (2006) Science , vol.311 , pp. 1118-1123
    • Sanchez-Elsner, T.1    Gou, D.2    Kremmer, E.3    Sauer, F.4
  • 74
    • 38449088751 scopus 로고    scopus 로고
    • Inferring cellular networks - a review
    • Florian Markowetz and Rainer Spang. Inferring cellular networks - a review. BMC Bioinformatics, 8(Suppl 6):S5, 2007.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 6
    • Markowetz, F.1    Spang, R.2
  • 75
    • 0035798360 scopus 로고    scopus 로고
    • Differential gene expression governed by chromosomal spatial asymmetry
    • Nov
    • J Dworkin and R Losick. Differential gene expression governed by chromosomal spatial asymmetry. Cell, 107(3):339-346, Nov 2001.
    • (2001) Cell , vol.107 , Issue.3 , pp. 339-346
    • Dworkin, J.1    Losick, R.2
  • 76
    • 22644434090 scopus 로고    scopus 로고
    • Where asymmetry in gene expression originates
    • Aug
    • I Barák and A J Wilkinson. Where asymmetry in gene expression originates. Mol Microbiol, 57(3):611-620, Aug 2005.
    • (2005) Mol Microbiol , vol.57 , Issue.3 , pp. 611-620
    • Barák, I.1    Wilkinson, A.J.2
  • 77
    • 0023677769 scopus 로고
    • A gradient of bicoid protein in drosophila embryos
    • Jul
    • W Driever and C Nüsslein-Volhard. A gradient of bicoid protein in drosophila embryos. Cell, 54(1):83-93, Jul 1988.
    • (1988) Cell , vol.54 , Issue.1 , pp. 83-93
    • Driever, W.1    Nüsslein-Volhard, C.2
  • 78
    • 0035188585 scopus 로고    scopus 로고
    • Getting the message across: The intracellular localization of mRNAs in higher eukaryotes
    • I M Palacios and D St Johnston. Getting the message across: The intracellular localization of mRNAs in higher eukaryotes. Annu Rev Cell Dev Biol, 17:569-614, 2001.
    • (2001) Annu Rev Cell Dev Biol , vol.17 , pp. 569-614
    • Palacios, I.M.1    St Johnston, D.2
  • 79
    • 33746206334 scopus 로고    scopus 로고
    • RNA trafficking and local protein synthesis in dendrites: An overview
    • K C Martin and R S Zukin. RNA trafficking and local protein synthesis in dendrites: An overview. J Neurosci, 26(27):7131-7134, 2006.
    • (2006) J Neurosci , vol.26 , Issue.27 , pp. 7131-7134
    • Martin, K.C.1    Zukin, R.S.2
  • 80
    • 34248580519 scopus 로고    scopus 로고
    • RNA localisation in the nervous system
    • Apr
    • R Dahm, M Kiebler, and P Macchi. RNA localisation in the nervous system. Semin Cell Dev Biol, 18(2):216-223, Apr 2007.
    • (2007) Semin Cell Dev Biol , vol.18 , Issue.2 , pp. 216-223
    • Dahm, R.1    Kiebler, M.2    Macchi, P.3
  • 82
    • 0031794821 scopus 로고    scopus 로고
    • Two distinct mechanisms for differential positioning of gene expression borders involving the drosophila, gap protein giant
    • X Wu, R Vakani, and S Small. Two distinct mechanisms for differential positioning of gene expression borders involving the drosophila, gap protein giant. Development, 125(19):3765-3774, 1998.
    • (1998) Development , vol.125 , Issue.19 , pp. 3765-3774
    • Wu, X.1    Vakani, R.2    Small, S.3
  • 83
    • 33750739234 scopus 로고    scopus 로고
    • Variations on a theme: Hox and Wnt combinatorial regulation during animal development
    • 355:pE38
    • S. Bondos. Variations on a theme: Hox and Wnt combinatorial regulation during animal development. Sci STKE, 355:pE38, 2006.
    • (2006) Sci STKE
    • Bondos, S.1
  • 84
    • 3843139305 scopus 로고    scopus 로고
    • Multiplex detection of RNA expression in drosophila embryos
    • D Kosman, C M Mizutani, D Lemons, W G Cox, W McGinnis, and E Bier. Multiplex detection of RNA expression in drosophila embryos. Science 305(5685):846-846, 2004.
    • (2004) Science , vol.305 , Issue.5685 , pp. 846-846
    • Kosman, D.1    Mizutani, C.M.2    Lemons, D.3    Cox, W.G.4    McGinnis, W.5    Bier, E.6
  • 86
    • 18944391695 scopus 로고    scopus 로고
    • Expression of hoxa-11 and hoxa-13 in the pectoral fin of a basal ray-finned fish, polyodon spathula: Implications for the origin of tetrapod limbs
    • May-Jun
    • B D Metscher, K Takahashi, K Crow, C Amemiya, D F Nonaka, and G P Wagner. Expression of hoxa-11 and hoxa-13 in the pectoral fin of a basal ray-finned fish, polyodon spathula: Implications for the origin of tetrapod limbs. Evol Dev, 7(3):186-195, May-Jun 2005.
    • (2005) Evol Dev , vol.7 , Issue.3 , pp. 186-195
    • Metscher, B.D.1    Takahashi, K.2    Crow, K.3    Amemiya, C.4    Nonaka, D.F.5    Wagner, G.P.6
  • 87
    • 0026744792 scopus 로고
    • Regulation of even-skipped stripe 2 in the drosophila. embryo
    • Nov
    • S Small, A Blair and M Levine. Regulation of even-skipped stripe 2 in the drosophila. embryo. EMBO J, 11(11):4047-4057, Nov 1992.
    • (1992) EMBO J , vol.11 , Issue.11 , pp. 4047-4057
    • Small, S.1    Blair, A.2    Levine, M.3
  • 88
    • 0030013231 scopus 로고    scopus 로고
    • Regulation of two pair-rule stripes by a single enhancer in the drosophila embryo
    • May
    • S Small, A Blair, and M Levine. Regulation of two pair-rule stripes by a single enhancer in the drosophila embryo. Dev Biol, 175(2):314-324, May 1996.
    • (1996) Dev Biol , vol.175 , Issue.2 , pp. 314-324
    • Small, S.1    Blair, A.2    Levine, M.3
  • 89
    • 0033037862 scopus 로고    scopus 로고
    • Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm. enhancers, and multi-stripe positioning by gap gene repressor gradients
    • Jun
    • M Fujioka, Y Emi-Sarker, G L Yusibova, T Goto, and J B Jaynes. Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm. enhancers, and multi-stripe positioning by gap gene repressor gradients. Development, 126(11):2527-2538, Jun 1999.
    • (1999) Development , vol.126 , Issue.11 , pp. 2527-2538
    • Fujioka, M.1    Emi-Sarker, Y.2    Yusibova, G.L.3    Goto, T.4    Jaynes, J.B.5
  • 91
    • 0025853591 scopus 로고
    • Individual stripe regulatory elements in the drosophila hairy promoter respond to maternal, gap, and pair-rule genes
    • G Riddihough and D Ish-Horowicz. Individual stripe regulatory elements in the drosophila hairy promoter respond to maternal, gap, and pair-rule genes. Genes Dev, 5(5):840-854, 1991.
    • (1991) Genes Dev , vol.5 , Issue.5 , pp. 840-854
    • Riddihough, G.1    Ish-Horowicz, D.2
  • 92
    • 28944439309 scopus 로고    scopus 로고
    • Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
    • Dec
    • A Stark, J Brennecke, N Bushati, R B Russell, and S M Cohen. Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell, 123(6):1133-1146, Dec 2005.
    • (2005) Cell , vol.123 , Issue.6 , pp. 1133-1146
    • Stark, A.1    Brennecke, J.2    Bushati, N.3    Russell, R.B.4    Cohen, S.M.5
  • 93
    • 34249279527 scopus 로고    scopus 로고
    • Stability and flexibility of epigenetic gene regulation in mammalian development
    • May
    • W Reik. Stability and flexibility of epigenetic gene regulation in mammalian development. Nature, 447(7143):425-432, May 2007.
    • (2007) Nature , vol.447 , Issue.7143 , pp. 425-432
    • Reik, W.1
  • 95
    • 12244265472 scopus 로고    scopus 로고
    • Best: A novel computational approach for comparing gene expression patterns from early stages of drosophila melanogaster development
    • Dec
    • S Kumar, K Jayaraman, S Panchanathan, R Gurunathan, A Marti-Subirana, and S J Newfeld. Best: A novel computational approach for comparing gene expression patterns from early stages of drosophila melanogaster development. Genetics, 162(4):2037-2047, Dec 2002.
    • (2002) Genetics , vol.162 , Issue.4 , pp. 2037-2047
    • Kumar, S.1    Jayaraman, K.2    Panchanathan, S.3    Gurunathan, R.4    Marti-Subirana, A.5    Newfeld, S.J.6
  • 96
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • The Human Genome Sequencing Consortium
    • The Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature, 431:931-945, 2004.
    • (2004) Nature , vol.431 , pp. 931-945
  • 97
    • 45149101194 scopus 로고    scopus 로고
    • Current approaches to gene regulatory network modelling
    • Thomas Schlitt and Alvis Brazma. Current approaches to gene regulatory network modelling. BMC Bioinformatics, 8 (Suppl 6):S9, 2007.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 6
    • Schlitt, T.1    Brazma, A.2
  • 98
    • 0344704297 scopus 로고    scopus 로고
    • Evolution of spatial expression pattern
    • Nov-Dec
    • L J Johnson and J F Brookfield. Evolution of spatial expression pattern. Evol Dev, 5(6):593-599, Nov-Dec 2003.
    • (2003) Evol Dev , vol.5 , Issue.6 , pp. 593-599
    • Johnson, L.J.1    Brookfield, J.F.2
  • 99
    • 37249065631 scopus 로고    scopus 로고
    • The evolution of developmental patterning under genetic duplication constraints
    • Jun, 10.1098/rsif.2007.1074
    • M A Fuentes and D C Krakauer. The evolution of developmental patterning under genetic duplication constraints. J R Soc Interface, Jun 2007. 10.1098/rsif.2007.1074.
    • (2007) J R Soc Interface
    • Fuentes, M.A.1    Krakauer, D.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.