-
1
-
-
19344363274
-
Cotranscriptional mRNP assembly: from the DNA to the nuclear pore
-
Aguilera A. Cotranscriptional mRNP assembly: from the DNA to the nuclear pore. Curr. Opin. Cell Biol. 17 (2005) 242-250
-
(2005)
Curr. Opin. Cell Biol.
, vol.17
, pp. 242-250
-
-
Aguilera, A.1
-
3
-
-
7444272009
-
Messenger RNA turnover in eukaryotes: pathways and enzymes
-
Meyer S., Temme C., and Wahle E. Messenger RNA turnover in eukaryotes: pathways and enzymes. Crit. Rev. Biochem. Mol. Biol. 39 (2004) 197-216
-
(2004)
Crit. Rev. Biochem. Mol. Biol.
, vol.39
, pp. 197-216
-
-
Meyer, S.1
Temme, C.2
Wahle, E.3
-
4
-
-
0742288008
-
The enzymes and control of eukaryotic mRNA turnover
-
Parker R., and Song H. The enzymes and control of eukaryotic mRNA turnover. Nat. Struct. Mol. Biol. 11 (2004) 121-127
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 121-127
-
-
Parker, R.1
Song, H.2
-
6
-
-
0027433035
-
Poly(A) tail metabolism and function in eucaryotes
-
Sachs A., and Wahle E. Poly(A) tail metabolism and function in eucaryotes. J. Biol. Chem. 268 (1993) 22955-22958
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 22955-22958
-
-
Sachs, A.1
Wahle, E.2
-
7
-
-
0037121926
-
Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures
-
van Dijk E., Cougot N., Meyer S., Babajko S., Wahle E., and Seraphin B. Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures. EMBO J. 21 (2002) 6915-6924
-
(2002)
EMBO J.
, vol.21
, pp. 6915-6924
-
-
van Dijk, E.1
Cougot, N.2
Meyer, S.3
Babajko, S.4
Wahle, E.5
Seraphin, B.6
-
9
-
-
0027214097
-
Yeast cells lacking 5′ → 3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure
-
Hsu C.L., and Stevens A. Yeast cells lacking 5′ → 3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure. Mol. Cell. Biol. 13 (1993) 4826-4835
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 4826-4835
-
-
Hsu, C.L.1
Stevens, A.2
-
10
-
-
14844359631
-
Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping
-
Chen N., Walsh M.A., Liu Y., Parker R., and Song H. Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping. J. Mol. Biol. 347 (2005) 707-718
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 707-718
-
-
Chen, N.1
Walsh, M.A.2
Liu, Y.3
Parker, R.4
Song, H.5
-
11
-
-
0142027794
-
DcpS can act in the 5′-3′ mRNA decay pathway in addition to the 3′-5′ pathway
-
van Dijk E., Le Hir H., and Seraphin B. DcpS can act in the 5′-3′ mRNA decay pathway in addition to the 3′-5′ pathway. Proc. Natl Acad. Sci. USA 100 (2003) 12081-12086
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 12081-12086
-
-
van Dijk, E.1
Le Hir, H.2
Seraphin, B.3
-
12
-
-
0030070804
-
The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity
-
Boeck R., Tarun Jr. S., Rieger M., Deardorff J.A., Muller-Auer S., and Sachs A.B. The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity. J. Biol. Chem. 271 (1996) 432-438
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 432-438
-
-
Boeck, R.1
Tarun Jr., S.2
Rieger, M.3
Deardorff, J.A.4
Muller-Auer, S.5
Sachs, A.B.6
-
13
-
-
0037184899
-
A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent translation
-
Uchida N., Hoshino S., Imataka H., Sonenberg N., and Katada T. A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent translation. J. Biol. Chem. 277 (2002) 50286-50292
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 50286-50292
-
-
Uchida, N.1
Hoshino, S.2
Imataka, H.3
Sonenberg, N.4
Katada, T.5
-
14
-
-
0035875115
-
The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation
-
Daugeron M.C., Mauxion F., and Seraphin B. The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation. Nucleic Acids Res. 29 (2001) 2448-2455
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2448-2455
-
-
Daugeron, M.C.1
Mauxion, F.2
Seraphin, B.3
-
15
-
-
0037086657
-
Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae
-
Tucker M., Staples R.R., Valencia-Sanchez M.A., Muhlrad D., and Parker R. Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae. EMBO J. 21 (2002) 1427-1436
-
(2002)
EMBO J.
, vol.21
, pp. 1427-1436
-
-
Tucker, M.1
Staples, R.R.2
Valencia-Sanchez, M.A.3
Muhlrad, D.4
Parker, R.5
-
16
-
-
0035830508
-
The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae
-
Tucker M., Valencia-Sanchez M.A., Staples R.R., Chen J., Denis C.L., and Parker R. The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae. Cell 104 (2001) 377-386
-
(2001)
Cell
, vol.104
, pp. 377-386
-
-
Tucker, M.1
Valencia-Sanchez, M.A.2
Staples, R.R.3
Chen, J.4
Denis, C.L.5
Parker, R.6
-
17
-
-
0026630153
-
Properties of a HeLa cell 3′ exonuclease specific for degrading poly(A) tails of mammalian mRNA
-
Astrom J., Astrom A., and Virtanen A. Properties of a HeLa cell 3′ exonuclease specific for degrading poly(A) tails of mammalian mRNA. J. Biol. Chem. 267 (1992) 18154-18159
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 18154-18159
-
-
Astrom, J.1
Astrom, A.2
Virtanen, A.3
-
18
-
-
0039535081
-
Poly(A) tail shortening by a mammalian poly(A)-specific 3′-exoribonuclease
-
Korner C.G., and Wahle E. Poly(A) tail shortening by a mammalian poly(A)-specific 3′-exoribonuclease. J. Biol. Chem. 272 (1997) 10448-10456
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 10448-10456
-
-
Korner, C.G.1
Wahle, E.2
-
19
-
-
0040126630
-
The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytes
-
Korner C.G., Wormington M., Muckenthaler M., Schneider S., Dehlin E., and Wahle E. The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytes. EMBO J. 17 (1998) 5427-5437
-
(1998)
EMBO J.
, vol.17
, pp. 5427-5437
-
-
Korner, C.G.1
Wormington, M.2
Muckenthaler, M.3
Schneider, S.4
Dehlin, E.5
Wahle, E.6
-
21
-
-
0035958843
-
The mRNA cap structure stimulates rate of poly(A) removal and amplifies processivity of degradation
-
Martinez J., Ren Y.G., Nilsson P., Ehrenberg M., and Virtanen A. The mRNA cap structure stimulates rate of poly(A) removal and amplifies processivity of degradation. J. Biol. Chem. 276 (2001) 27923-27929
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 27923-27929
-
-
Martinez, J.1
Ren, Y.G.2
Nilsson, P.3
Ehrenberg, M.4
Virtanen, A.5
-
22
-
-
0035282971
-
A novel mRNA-decapping activity in HeLa cytoplasmic extracts is regulated by AU-rich elements
-
Gao M., Wilusz C.J., Peltz S.W., and Wilusz J. A novel mRNA-decapping activity in HeLa cytoplasmic extracts is regulated by AU-rich elements. EMBO J. 20 (2001) 1134-1143
-
(2001)
EMBO J.
, vol.20
, pp. 1134-1143
-
-
Gao, M.1
Wilusz, C.J.2
Peltz, S.W.3
Wilusz, J.4
-
23
-
-
27744450477
-
A cell-free mRNA stability assay reveals conservation of the enzymes and mechanisms of mRNA decay between mosquito and mammalian cell lines
-
Opyrchal M., Anderson J.R., Sokoloski K.J., Wilusz C.J., and Wilusz J. A cell-free mRNA stability assay reveals conservation of the enzymes and mechanisms of mRNA decay between mosquito and mammalian cell lines. Insect Biochem. Mol. Biol. 35 (2005) 1321-1334
-
(2005)
Insect Biochem. Mol. Biol.
, vol.35
, pp. 1321-1334
-
-
Opyrchal, M.1
Anderson, J.R.2
Sokoloski, K.J.3
Wilusz, C.J.4
Wilusz, J.5
-
24
-
-
0034980436
-
The mechanism and regulation of deadenylation: identification and characterization of Xenopus PARN
-
Copeland P.R., and Wormington M. The mechanism and regulation of deadenylation: identification and characterization of Xenopus PARN. RNA 7 (2001) 875-886
-
(2001)
RNA
, vol.7
, pp. 875-886
-
-
Copeland, P.R.1
Wormington, M.2
-
25
-
-
28644436520
-
Structural insight into poly(A) binding and catalytic mechanism of human PARN
-
Wu M., Reuter M., Lilie H., Liu Y., Wahle E., and Song H. Structural insight into poly(A) binding and catalytic mechanism of human PARN. EMBO J. 24 (2005) 4082-4093
-
(2005)
EMBO J.
, vol.24
, pp. 4082-4093
-
-
Wu, M.1
Reuter, M.2
Lilie, H.3
Liu, Y.4
Wahle, E.5
Song, H.6
-
26
-
-
10344253855
-
Coordination of divalent metal ions in the active site of poly(A)-specific ribonuclease
-
Ren Y.G., Kirsebom L.A., and Virtanen A. Coordination of divalent metal ions in the active site of poly(A)-specific ribonuclease. J. Biol. Chem. 279 (2004) 48702-48706
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 48702-48706
-
-
Ren, Y.G.1
Kirsebom, L.A.2
Virtanen, A.3
-
27
-
-
33847159852
-
Effect of magnesium ions on the thermal stability of human poly(A)-specific ribonuclease
-
Liu W.F., Zhang A., Cheng Y., Zhou H.M., and Yan Y.B. Effect of magnesium ions on the thermal stability of human poly(A)-specific ribonuclease. FEBS Lett. 581 (2007) 1047-1052
-
(2007)
FEBS Lett.
, vol.581
, pp. 1047-1052
-
-
Liu, W.F.1
Zhang, A.2
Cheng, Y.3
Zhou, H.M.4
Yan, Y.B.5
-
28
-
-
0031574363
-
The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains
-
Moser M.J., Holley W.R., Chatterjee A., and Mian I.S. The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains. Nucleic Acids Res. 25 (1997) 5110-5118
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 5110-5118
-
-
Moser, M.J.1
Holley, W.R.2
Chatterjee, A.3
Mian, I.S.4
-
29
-
-
36348944525
-
A multifunctional RNA recognition motif in poly(A)-specific ribonuclease with cap and poly(A) binding properties
-
Nilsson P., Henriksson N., Niedzwiecka A., Balatsos N.A., Kokkoris K., Eriksson J., and Virtanen A. A multifunctional RNA recognition motif in poly(A)-specific ribonuclease with cap and poly(A) binding properties. J. Biol. Chem. 282 (2007) 32902-32911
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 32902-32911
-
-
Nilsson, P.1
Henriksson, N.2
Niedzwiecka, A.3
Balatsos, N.A.4
Kokkoris, K.5
Eriksson, J.6
Virtanen, A.7
-
30
-
-
51249101399
-
-
Dehlin. (2004). Cap dependence of the poly(A)-specific ribonuclease PARN. Dissertation Universität Halle-Wittenberg.
-
Dehlin. (2004). Cap dependence of the poly(A)-specific ribonuclease PARN. Dissertation Universität Halle-Wittenberg.
-
-
-
-
31
-
-
34447546524
-
The R3H domain stabilizes poly(A)-specific ribonuclease by stabilizing the RRM domain
-
Liu W.F., Zhang A., He G.J., and Yan Y.B. The R3H domain stabilizes poly(A)-specific ribonuclease by stabilizing the RRM domain. Biochem. Biophys. Res. Commun. 360 (2007) 846-851
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.360
, pp. 846-851
-
-
Liu, W.F.1
Zhang, A.2
He, G.J.3
Yan, Y.B.4
-
32
-
-
0034649461
-
Structural requirements for the specific recognition of an m7G mRNA cap
-
Hsu P.C., Hodel M.R., Thomas J.W., Taylor L.J., Hagedorn C.H., and Hodel A.E. Structural requirements for the specific recognition of an m7G mRNA cap. Biochemistry 39 (2000) 13730-13736
-
(2000)
Biochemistry
, vol.39
, pp. 13730-13736
-
-
Hsu, P.C.1
Hodel, M.R.2
Thomas, J.W.3
Taylor, L.J.4
Hagedorn, C.H.5
Hodel, A.E.6
-
34
-
-
0033607476
-
Identification, characterization and crystal structure analysis of the human spliceosomal U5 snRNP-specific 15 kD protein
-
Reuter K., Nottrott S., Fabrizio P., Luhrmann R., and Ficner R. Identification, characterization and crystal structure analysis of the human spliceosomal U5 snRNP-specific 15 kD protein. J. Mol. Biol. 294 (1999) 515-525
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 515-525
-
-
Reuter, K.1
Nottrott, S.2
Fabrizio, P.3
Luhrmann, R.4
Ficner, R.5
-
35
-
-
4644366388
-
HKL2MAP: a graphical user interface for phasing with SHELX programs
-
Pape T., and Schneider T.R. HKL2MAP: a graphical user interface for phasing with SHELX programs. J. Appl. Crystallogr. 37 (2004) 843-844
-
(2004)
J. Appl. Crystallogr.
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
36
-
-
0030809260
-
wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models
-
Perrakis A., Sixma T.K., Wilson K.S., and Lamzin V.S. wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models. Acta Crystallogr., Sect. D: Biol. Crystallogr. 53 (1997) 448-455
-
(1997)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.53
, pp. 448-455
-
-
Perrakis, A.1
Sixma, T.K.2
Wilson, K.S.3
Lamzin, V.S.4
-
40
-
-
0036882072
-
Structural basis of m7GpppG binding to the nuclear cap-binding protein complex
-
Calero G., Wilson K.F., Ly T., Rios-Steiner J.L., Clardy J.C., and Cerione R.A. Structural basis of m7GpppG binding to the nuclear cap-binding protein complex. Nat. Struct. Biol. 9 (2002) 912-917
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 912-917
-
-
Calero, G.1
Wilson, K.F.2
Ly, T.3
Rios-Steiner, J.L.4
Clardy, J.C.5
Cerione, R.A.6
-
41
-
-
0037107401
-
Large-scale induced fit recognition of an m(7)GpppG cap analogue by the human nuclear cap-binding complex
-
Mazza C., Segref A., Mattaj I.W., and Cusack S. Large-scale induced fit recognition of an m(7)GpppG cap analogue by the human nuclear cap-binding complex. EMBO J. 21 (2002) 5548-5557
-
(2002)
EMBO J.
, vol.21
, pp. 5548-5557
-
-
Mazza, C.1
Segref, A.2
Mattaj, I.W.3
Cusack, S.4
-
42
-
-
0030728936
-
Cocrystal structure of the messenger RNA 5′ cap-binding protein (eIF4E) bound to 7-methyl-GDP
-
Marcotrigiano J., Gingras A.C., Sonenberg N., and Burley S.K. Cocrystal structure of the messenger RNA 5′ cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell 89 (1997) 951-961
-
(1997)
Cell
, vol.89
, pp. 951-961
-
-
Marcotrigiano, J.1
Gingras, A.C.2
Sonenberg, N.3
Burley, S.K.4
-
43
-
-
0030826444
-
Structure of translation factor eIF4E bound to m7GDP and interaction with 4E-binding protein
-
Matsuo H., Li H., McGuire A.M., Fletcher C.M., Gingras A.C., Sonenberg N., and Wagner G. Structure of translation factor eIF4E bound to m7GDP and interaction with 4E-binding protein. Nat. Struct. Biol. 4 (1997) 717-724
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 717-724
-
-
Matsuo, H.1
Li, H.2
McGuire, A.M.3
Fletcher, C.M.4
Gingras, A.C.5
Sonenberg, N.6
Wagner, G.7
-
44
-
-
0036307897
-
Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5′ cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins
-
Niedzwiecka A., Marcotrigiano J., Stepinski J., Jankowska-Anyszka M., Wyslouch-Cieszynska A., Dadlez M., et al. Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5′ cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins. J. Mol. Biol. 319 (2002) 615-635
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 615-635
-
-
Niedzwiecka, A.1
Marcotrigiano, J.2
Stepinski, J.3
Jankowska-Anyszka, M.4
Wyslouch-Cieszynska, A.5
Dadlez, M.6
-
45
-
-
0037086471
-
Crystal structures of 7-methylguanosine 5′-triphosphate (m(7)GTP)- and P(1)-7-methylguanosine-P(3)-adenosine-5′,5′-triphosphate (m(7)GpppA)-bound human full-length eukaryotic initiation factor 4E: biological importance of the C-terminal flexible region
-
Tomoo K., Shen X., Okabe K., Nozoe Y., Fukuhara S., Morino S., et al. Crystal structures of 7-methylguanosine 5′-triphosphate (m(7)GTP)- and P(1)-7-methylguanosine-P(3)-adenosine-5′,5′-triphosphate (m(7)GpppA)-bound human full-length eukaryotic initiation factor 4E: biological importance of the C-terminal flexible region. Biochem. J. 362 (2002) 539-544
-
(2002)
Biochem. J.
, vol.362
, pp. 539-544
-
-
Tomoo, K.1
Shen, X.2
Okabe, K.3
Nozoe, Y.4
Fukuhara, S.5
Morino, S.6
-
46
-
-
0037466314
-
Structural features of human initiation factor 4E, studied by X-ray crystal analyses and molecular dynamics simulations
-
Tomoo K., Shen X., Okabe K., Nozoe Y., Fukuhara S., Morino S., et al. Structural features of human initiation factor 4E, studied by X-ray crystal analyses and molecular dynamics simulations. J. Mol. Biol. 328 (2003) 365-383
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 365-383
-
-
Tomoo, K.1
Shen, X.2
Okabe, K.3
Nozoe, Y.4
Fukuhara, S.5
Morino, S.6
-
47
-
-
0031993338
-
Structural basis for sequence-nonspecific recognition of 5′-capped mRNA by a cap-modifying enzyme
-
Hodel A.E., Gershon P.D., and Quiocho F.A. Structural basis for sequence-nonspecific recognition of 5′-capped mRNA by a cap-modifying enzyme. Mol. Cell 1 (1998) 443-447
-
(1998)
Mol. Cell
, vol.1
, pp. 443-447
-
-
Hodel, A.E.1
Gershon, P.D.2
Quiocho, F.A.3
-
48
-
-
0031137290
-
Specific protein recognition of an mRNA cap through its alkylated base
-
Hodel A.E., Gershon P.D., Shi X., Wang S.M., and Quiocho F.A. Specific protein recognition of an mRNA cap through its alkylated base. Nat. Struct. Biol. 4 (1997) 350-354
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 350-354
-
-
Hodel, A.E.1
Gershon, P.D.2
Shi, X.3
Wang, S.M.4
Quiocho, F.A.5
-
49
-
-
0033594890
-
mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains
-
Hu G., Gershon P.D., Hodel A.E., and Quiocho F.A. mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains. Proc. Natl. Acad. Sci. USA 96 (1999) 7149-7154
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7149-7154
-
-
Hu, G.1
Gershon, P.D.2
Hodel, A.E.3
Quiocho, F.A.4
-
50
-
-
0037129933
-
The "cap-binding slot" of an mRNA cap-binding protein: quantitative effects of aromatic side chain choice in the double-stacking sandwich with cap
-
Hu G., Oguro A., Li C., Gershon P.D., and Quiocho F.A. The "cap-binding slot" of an mRNA cap-binding protein: quantitative effects of aromatic side chain choice in the double-stacking sandwich with cap. Biochemistry 41 (2002) 7677-7687
-
(2002)
Biochemistry
, vol.41
, pp. 7677-7687
-
-
Hu, G.1
Oguro, A.2
Li, C.3
Gershon, P.D.4
Quiocho, F.A.5
-
51
-
-
24044465540
-
Specificity of recognition of mRNA 5′ cap by human nuclear cap-binding complex
-
Worch R., Niedzwiecka A., Stepinski J., Mazza C., Jankowska-Anyszka M., Darzynkiewicz E., et al. Specificity of recognition of mRNA 5′ cap by human nuclear cap-binding complex. RNA 11 (2005) 1355-1363
-
(2005)
RNA
, vol.11
, pp. 1355-1363
-
-
Worch, R.1
Niedzwiecka, A.2
Stepinski, J.3
Mazza, C.4
Jankowska-Anyszka, M.5
Darzynkiewicz, E.6
|