A multifunctional RNA recognition motif in poly(A)-specific ribonuclease with cap and poly(A) binding properties

Journal of Biological Chemistry

Volumn 282, Issue 45, 2007, Pages 32902-32911

  Nilsson, Per ^a   Henriksson, Niklas ^a   Niedzwiecka, Anna ^b,c   Balatsos, Nikolaos A A ^a,d,e   Kokkoris, Kyriakos ^a   Eriksson, Jens ^a   Virtanen, Anders ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b INSTITUTE OF PHYSICS   (Poland)

^c UNIVERSITY OF WARSAW   (Poland)

^d UNIVERSITY OF THESSALY   (Greece)

^e INSTITUTE OF HUMAN PERFORMANCE AND REHABILITATION   (Greece)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENCE SPECTROSCOPY; HYDROLYSIS; MOLECULAR RECOGNITION;

BINDING PROPERTIES; MICROMOLAR AFFINITY; TRYPTOPHAN RESIDUE;

RNA;

POLYADENYLIC ACID; TRYPTOPHAN;

ARTICLE; BINDING AFFINITY; BINDING ASSAY; BINDING SITE; FLUORESCENCE SPECTROSCOPY; HUMAN; HYDROLYSIS; KINETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN MOTIF; RECOGNITION;

EID: 36348944525     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M702375200     Document Type: Article

References (51)

1. Shatkin, A. J., and Manley, J. L. (2000) Nat. Struct. Biol. 7, 838-842
2. Meyer, S., Temme, C., and Wahle, E. (2004) Crit Rev. Biochem. Mol. Biol. 39, 197-216
3. Parker, R., and Song, H. (2004) Nat. Struct. Mol. Biol. 11, 121-127
4. Sachs, A. B., and Varani, G. (2000) Nat. Struct. Biol. 7, 356-361
5. Wilusz, C. J., Wormington, M., and Peltz, S. W. (2001) Nat. Rev. Mol. Cell. Biol. 2, 237-246
6. Izaurralde, E., Lewis, J., McGuigan, C., Jankowska, M., Darzynkiewicz, E., and Mattaj, I. W. (1994) Cell 78, 657-668
7. Flaherty, S. M., Fortes, P., Izaurralde, E., Mattaj, I. W., and Gilmartin, G. M. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 11893-11898
8. Visa, N., Izaurralde, E., Ferreira, J., Daneholt, B., and Mattaj, I. W. (1996) J. Cell Biol. 133, 5-14
9. Balatsos, N. A., Nilsson, P., Mazza, C., Cusack, S., and Virtanen, A. (2006) J. Biol. Chem. 281, 4517-4522
10. Labourier, E., Adams, M. D., and Rio, D. C. (2001) Mol. Cell 8, 363-373
11. Lejeune, F., Ranganathan, A. C., and Maquat, L. E. (2004) Nat. Struct. Mol. Biol. 11, 992-1000
12. Kabnick, K. S., and Housman, D. E. (1988) Mol. Cell. Biol. 8, 3244-3250
13. Kuhn, U., and Wahle, E. (2004) Biochim. Biophys. Acta 1678, 67-84
14. Garneau, N. L., Wilusz, J., and Wilusz, C. J. (2007) Nat. Rev. Mol. Cell. Biol. 8, 113-126
15. Boeck, R., Tarun, S., Rieger, M., Deardorff, J. A., Müller-Auer, S., and Sachs, A. B. (1996) J. Biol. Chem. 271, 432-438
16. Uchida, N., Hoshino, S., and Katada, T. (2004) J. Biol. Chem. 279, 1383-1391
17. Daugeron, M. C., Mauxion, F., and Seraphin, B. (2001) Nucleic Acids Res. 29, 2448-2455
18. Tucker, M., Valencia-Sanchez, M. A., Staples, R. R., Chen, J., Denis, C. L., and Parker, R. (2001) Cell 104, 377-386
19. Copeland, P. R., and Wormington, M. (2001) RNA 7, 875-886
20. Körner, C. G., and Wahle, E. (1997) J. Biol. Chem. 272, 10448-10456
21. Körner, C. G., Wormington, M., Muckenthaler, M., Schneider, S., Dehlin, E., and Wahle, E. (1998) EMBO J. 17, 5427-5437
22. Martinez, J., Ren, Y. G., Thuresson, A. C., Hellman, U., Astrom, J., and Virtanen, A. (2000) J. Biol. Chem. 275, 24222-24230
23. Opyrchal, M., Anderson, J. R., Sokoloski, K. J., Wilusz, C. J., and Wilusz, J. (2005) Insect Biochem. Mol. Biol. 35, 1321-1334
24. Åström, J., Åström, A., and Virtanen, A. (1991) EMBO J. 10, 3067-3071
25. Dehlin, E., Wormington, M., Körner, C. G., and Wahle, E. (2000) EMBO J. 19, 1079-1086
26. Gao, M., Fritz, D. T., Ford, L. P., and Wilusz, J. (2000) Mol. Cell 5, 479-488
27. Martinez, J., Ren, Y. G., Nilsson, P., Ehrenberg, M., and Virtanen, A. (2001) J. Biol. Chem. 276, 27923-27929
28. Wu, M., Reuter, M., Lilie, H., Liu, Y., Wahle, E., and Song, H. (2005)EMBO J. 24, 4082-4093
29. Ren, Y. G., Kirsebom, L. A., and Virtanen, A. (2004) J. Biol. Chem. 279, 48702-48706
30. Ren, Y. G., Martinez, J., and Virtanen, A. (2002) J. Biol. Chem. 277, 5982-5987
31. Grishin, N. V. (1998) Trends Biochem. Sci 23, 329-330
32. Nilsson, P., and Virtanen, A. (2006) Int. J. Biol. Macromol. 39, 95-99
33. Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I., Appel, R. D., and Bairoch, A. (2003) Nucleic Acids Res. 31, 3784-3788
34. Cai, A., Jankowska-Anyszka, M., Centers, A., Chlebicka, L., Stepinski, J., Stolarski, R., Darzynkiewicz, E., and Rhoads, R. E. (1999) Biochemistry 38, 8538-8547
35. Niedzwiecka, A., Marcotrigiano, J., Stepinski, J., Jankowska-Anyszka, M., Wyslouch-Cieszynska, A., Dadlez, M., Gingras, A. C., Mak, P., Darzynkiewicz, E., Sonenberg, N., Burley, S. K., and Stolarski, R. (2002) J. Mol. Biol. 319, 615-635
36. Marcotrigiano, J., Gingras, A. C., Sonenberg, N., and Burley, S. K. (1997) Cell 89, 951-961
37. Matsuo, H., Li, H., McGuire, A. M., Fletcher, C. M., Gingras, A. C., Sonenberg, N., and Wagner, G. (1997) Nat. Struct. Biol. 4, 717-724
38. Tomoo, K., Shen, X., Okabe, K., Nozoe, Y., Fukuhara, S., Morino, S., Ishida, T., Taniguchi, T., Hasegawa, H., Terashima, A., Sasaki, M., Katsuya, Y., Kitamura, K., Miyoshi, H., Ishikawa, M., and Miura, K. (2002) Biochem. J. 362, 539-544
39. Calero, G., Wilson, K. F., Ly, T., Rios-Steiner, J. L., Clardy, J. C., and Cerione, R. A. (2002) Nat. Struct. Biol. 9, 912-917
40. Mazza, C., Ohno, M., Segref, A., Mattaj, I. W., and Cusack, S. (2001) Mol. Cell 8, 383-396
41. Mazza, C., Segref, A., Mattaj, I. W., and Cusack, S. (2002) EMBO J. 21, 5548-5557
42. Gu, M., Fabrega, C., Liu, S. W., Liu, H., Kiledjian, M., and Lima, C. D. (2004) Mol. Cell 14, 67-80
43. Fechter, P., Mingay, L., Sharps, J., Chambers, A., Fodor, E., and Brownlee, G. G. (2003) J. Biol. Chem. 278, 20381-20388
44. Hodel, A. E., Gershon, P. D., and Quiocho, F. A. (1998) Mol. Cell 1, 443-447
45. Worch, R., Niedzwiecka, A., Stepinski, J., Mazza, C., Jankowska-Anyszka, M., Darzynkiewicz, E., Cusack, S., and Stolarski, R. (2005) RNA (N.Y.) 11, 1355-1363
46. Maris, C., Dominguez, C., and Allain, F. H. (2005) FEBS J. 272, 2118-2131
47. Reverdatto, S. V., Dutko, J. A., Chekanova, J. A., Hamilton, D. A., and Belostotsky, D. A. (2004) RNA (N.Y.) 10, 1200-1214
48. Deo, R. C., Bonanno, J. B., Sonenberg, N., and Burley, S. K. (1999) Cell 98, 835-845
49. Kielkopf, C. L., Rodionova, N. A., Green, M. R., and Burley, S. K. (2001) Cell 106, 595-605
50. Khanna, R., and Kiledjian, M. (2004) EMBO J. 23, 1968-1976
51. Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S. R., Griffiths-Jones, S., Howe, K. L., Marshall, M., and Sonnhammer, E. L. (2002) Nucleic Acids Res. 30, 276-280