Coordination of divalent metal ions in the active site of poly(A)-specific ribonuclease

Journal of Biological Chemistry

Volumn 279, Issue 47, 2004, Pages 48702-48706

  Ren, Yan Guo ^a   Kirsebom, Leif A ^a   Virtanen, Anders ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CATALYSIS; IONS; METALS; OXYGEN;

CYSTEINES; NON-BRIDGING PHOSPHATE; POLY(A)-SPECIFIC RIBONUCLEASE (PARN);

RNA;

ADENOSINE DINUCLEOTIDE; ADENOSINE TRIPHOSPHATE; CADMIUM; COBALT; MAGNESIUM ION; MANGANESE; METAL ION; NUCLEOTIDE DERIVATIVE; POLYADENYLATE SPECIFIC RIBONUCLEASE; RIBONUCLEASE; UNCLASSIFIED DRUG; ZINC ION;

AMINO ACID SUBSTITUTION; ARTICLE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME DEGRADATION; ENZYME SUBSTRATE; MUTATION; PRIORITY JOURNAL; REGULATORY MECHANISM;

ADENOSINE; ASPARTIC ACID; BINDING SITES; CADMIUM; COBALT; CONSERVED SEQUENCE; EXORIBONUCLEASES; GLUTAMIC ACID; HUMANS; HYDROLYSIS; IONS; KINETICS; MAGNESIUM; MANGANESE; MODELS, CHEMICAL; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; MUTATION; OXYGEN; PROTEIN BINDING; RECOMBINANT PROTEINS; RNA; RNA, MESSENGER; STEREOISOMERISM; SUBSTRATE SPECIFICITY; ZINC;

EID: 10344253855     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M403858200     Document Type: Article

References (33)

1. Åström, J., Åström, A., and Virtanen, A. (1991) EMBO J. 10, 3067-3071
2. Åström, J., Åström, A., and Virtanen, A. (1992) J. Biol. Chem. 267, 18154-18159
3. Copeland, P. R., and Wormingtou, M. (2001) RNA (N. Y.) 7, 875-886
4. Körner, C. G., and Wahle, E. (1997) J. Biol. Chem. 272, 10448-10456
5. Körner, C. G., Wormington, M., Muckenthaler, M., Schneider, S., Dehlin, E., and Wahle, E. (1998) EMBO J. 17, 5427-5437
6. Martinez, J., Ren, Y. G., Thuresson, A. C., Hellman, U., Astrom, J., and Virtanen, A. (2000) J. Biol. Chem. 275, 24222-24230
7. Dehlin, E., Wormington, M., Körner, C. G., and Wahle, E. (2000) EMBO J. 19, 1079-1086
8. Gao, M., Fritz, D. T., Ford, L. P., and Wilusz, J. (2000) Mol. Cell 5, 479-488
9. Martinez, J., Ren, Y. G., Nilsson, P., Ehrenberg, M., and Virtanen, A. (2001) J. Biol. Chem. 276, 27923-27929
10. Mian, I. S. (1997) Nucleic Acids Res. 25, 3187-3195
11. Moser, M. J., Holley, W. R., Chatterjee, A., and Mian, I. S. (1997) Nucleic Acids Res. 25, 5110-5118
12. Zuo, Y., and Deutscher, M. P. (2001) Nucleic Acids Res. 29, 1017-1026
13. Ren, Y. G., Martinez, J., and Virtanen, A. (2002) J. Biol. Chem. 277, 5982-5987
14. Beese, L. S., and Steitz, T. A. (1991) EMBO J. 10, 25-33
15. Freemont, P. S., Friedman, J. M., Beese, L. S., Sanderson, M. R., and Steitz, T. A. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 8924-8928
16. Shan, S., Kravchuk, A. V., Piccirilli, J. A., and Herschlag, D. (2001) Biochemistry 40, 5161-5171
17. Brautigam, C. A., and Steitz, T. A. (1998) J. Mol. Biol. 277, 363-377
18. Sontheimer, E. J., Sun, S., and Piccirilli, J. A. (1997) Nature 388, 801-805
19. Sontheimer, E. J., Gordon, P. M., and Piccirilli, J. A. (1999) Genes Dev. 13, 1729-1741
20. Vortler, L. C., and Eckstein, F. (2000) Methods Enzymol. 317, 74-91
21. Warnecke, J. M., Held, R., Busch, S., and Hartmann, R. K. (1999) J. Mol. Biol. 290, 433-445
22. Warnecke, J. M., Sontheimer, E. J., Piccirilli, J. A., and Hartmann, R. K. (2000) Nucleic Acids Res. 28, 720-727
23. Jaffe, E. K., and Cohn, M. (1978) J. Biol. Chem. 253, 4823-4825
24. Verma, S., and Eckstein, F. (1998) Annu. Rev. Biochem. 67, 99-134
25. Burgers, P. M., and Eckstein, F. (1978) Proc. Natl. Acad. Sci. U. S. A. 75, 4798-4800
26. Kim, D. R., Dai, Y., Mundy, C. L., Yang, W., and Oettinger, M. A. (1999) Genes Dev. 13, 3070-3080
27. Slim, G., and Gait, M. J. (1991) Nucleic Acids Res. 19, 1183-1188
28. Derbyshire, V., Grindley, N. D., and Joyce, C. M. (1991) EMBO J. 10, 17-24
29. Derbyshire, V., Pinsonneault, J. K., and Joyce, C. M. (1995) Methods Enzymol. 262, 363-385
30. Steitz, T. A., and Steitz, J. A. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 6498-6502
31. Brautigam, C. A., Sun, S., Piccirilli, J. A., and Steitz, T. A. (1999) Biochemistry 38, 696-704
32. Brautigam, C. A., Aschheim, K., and Steitz, T. A. (1999) Chem. Biol. 6, 901-908
33. Brautigam, C. A., and Steitz, T. A. (1998) Curr. Opin. Struct. Biol. 8, 54-63