mRNA cap recognition: Dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 13, 1999, Pages 7149-7154

  Hu, Guanghui ^a   Gershon, Paul D ^b   Hodel, Alec E ^a   Quiocho, Florante A ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b TEXAS A AND M HEALTH SCIENCE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAPPED RNA; MESSENGER RNA; NUCLEIC ACID BASE;

ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; HYDROGEN BOND; METHYLATION; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN RNA BINDING; PROTEIN STRUCTURE; RNA STRUCTURE; SITE DIRECTED MUTAGENESIS; STEREOCHEMISTRY; STRUCTURE ACTIVITY RELATION;

BINDING SITES; METHYLTRANSFERASES; MUTATION; PROTEIN BINDING; RNA CAPS; SUBSTRATE SPECIFICITY; VIRAL PROTEINS;

EID: 0033594890     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.13.7149     Document Type: Article

References (24)

1. Yamagata, Y., Kato, M., Odawara, K., Tokuno, Y., Nakashima, Y., Matsushima, N., Yasumura, K., Tomita, K., Ihara, K., Fujii, Y., et al. (1996) Cell 86, 311-319.
2. Labahn, J., Scharer, O. D., Long, A., Ezaz-Nikpay, K., Verdine, G. L. & Ellenberger, T. E. (1996) Cell 86, 321-329.
3. Gershon, P. D. & Moss, B. (1993) J. Biol. Chem. 268, 2203-2210.
4. Barbosa, E. & Moss, B. (1978) J. Biol. Chem. 253, 7698-7702.
5. Hodel, A. E., Gershon, P. D., Shi, X. & Quiocho, F. A. (1996) Cell 85, 247-256.
6. Hodel, A. E., Gershon, P. D., Shi, X., Wang, S.-M. & Quiocho, F. A. (1997) Nat. Struct. Biol. 4, 350-354.
7. Hodel, A. E., Gershon, P. D. & Quiocho, F. A. (1998) Mol. Cell 1, 443-447.
8. Hendler, S., Furer, E. & Srinivasan, P. R. (1970) Biochemistry 9, 4141-4153.
9. Marcotrigiano, J., Gingras, A.-C., Sonnenberg, N. & Burley, S. K. (1997) Cell 89, 951-961.
10. Shi, X., Bernhardt, T. G., Wang, S.-M. & Gershon, P. D. (1997) J. Biol. Chem. 272, 23292-23302.
11. Otwinowski, Z. & Minor, W. (1997) Methods Enzymol. 276, 307-326.
12. Brünger, A. T. (1992) XPLOR Version 3.1 (Yale Univ. Press, New Haven, CT).
13. Huang, C. C., Pettersen, E. F., Klein, T. E., Ferrin, T. E. & Langridge, R. (1991) J. Mol. Graphics 9, 230-235.
14. Nicholls, A., Sharp, K. A. & Honig, B. (1991) Proteins 11, 281-296.
15. Miller, D. M., Olson, J. S., Pflugrath, J. W. & Quiocho, F. A. (1983) J. Biol. Chem. 258, 13665-13672.
16. Vermersch, P. S., Tesmer, J. J., Lemon, D. D. & Quiocho, F. A. (1990) J. Biol. Chem. 265, 16592-16603.
17. Adams, B. L., Morgan, M., Muthukrishnan, S., Hecht, S. M. & Shatkin, A. J. (1978) J. Biol. Chem. 253, 2589-2595.
18. Lockless, S. W., Cheng, H.-T., Hodel, A. E., Quiocho, F. A. & Gershon, P. D. (1998) Biochemistry 37, 8564-8574.
19. Fasman, G. D. (1975) Handbook of Biochemistry and Molecular Biology: Nucleic Acids (CRC, Cleveland), Vol. 1.
20. Morino, S., Hazama, H., Ozaki, M., Teraoka, Y., Shibata, S., Doi, M., Ueda, H., Ishida, T. & Uesugi, S. (1996) Eur. J. Biochem. 239, 597-601.
21. Ishida, T., Doi, M., Ueda, H., Inoue, M. & Scheldrick, G. M. (1988) J. Am. Chem. Soc. 110, 2286-2296.
22. Ishida, T., Shibata, M., Fujii, K. & Inoue, M. (1983) Biochemistry 22, 3571-3581.
23. Dougherty, D. A. (1996) Science 271, 163-168.
24. Pullman, B. & Pullman, A. (1958) Proc. Natl. Acad. Sci. USA 44, 1197-1202.