Yeast diversity in crop-growing environments in Cameroon

International Journal of Food Microbiology

Volumn 127, Issue 1-2, 2008, Pages 184-189

  Stringini, Marzia ^a   Comitini, Francesca ^a   Taccari, Manuela ^a   Ciani, Maurizio ^a  

^a UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

Author keywords

Biodiversity; Ecology; Enrichment cultures; Molecular methods; PCR DGGE; Yeast

Indexed keywords

RIBOSOME RNA;

ARTICLE; BIODIVERSITY; CAMEROON; CANDIDA TROPICALIS; ENVIRONMENT; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; GENE SEQUENCE; HANSENIASPORA UVARUM; MICROBIOLOGICAL EXAMINATION; NONHUMAN; NUCLEOTIDE SEQUENCE; SACCHAROMYCES CEREVISIAE; TORULASPORA DELBRUECKII; YEAST;

BIODIVERSITY; CAMEROON; COLONY COUNT, MICROBIAL; CROPS, AGRICULTURAL; CULTURE MEDIA; DNA RESTRICTION ENZYMES; DNA, FUNGAL; DNA, RIBOSOMAL; GENETIC VARIATION; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 5.8S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; YEASTS;

CANDIDA TROPICALIS; HANSENIASPORA UVARUM; SACCHAROMYCES CEREVISIAE; TORULASPORA DELBRUECKII;

EID: 50649107679     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2008.07.017     Document Type: Article

References (34)

1. Amoa-Awua W.K., Sampson E., and Tano-Debrah K. Growth of yeasts, lactic and acetic bacteria in palm wine during tapping and fermentation from felled oil palm (Elaeis guineensis) in Ghana. J. Appl. Microbiol. 47 (2006) 1-8
2. Ampe F., Ben Omar N., Moizan C., Wacher C., and Guyor J. Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need foe cultivation-independent methods to investigate traditional fermentation. Appl. Environ. Microbiol. 65 (1999) 5464-5473
3. Anderson I.C., and Cairney J.W.G. Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques. Environ. Microbiol. 6 (2004) 769-779
4. Ardhana M.M., and Fleet G.H. The microbial ecology of cocoa bean fermentations in Indonesia. Int. J. Food Microbiol. 86 (2003) 87-99
5. Arias C.R., Burns J.K., Friedrich L.M., Goodrich R.M., and Parish M.E. Yeast species associated with orange juice: evaluation of different identification methods. Appl. Environ. Microbiol 68 (2002) 1955-1961
6. Arroyo-Lòpez F.N., Duràn-Quintana M.C., Ruiz-Barba J.L., Querol A., and Garrido-Fernàndez A. Use of molecular methods for the identification of yeast associated with table olives. Food Microbiol. 23 (2006) 791-796
7. Buzzini P., and Martini A. Extracellular enzymatic activity profiles in yeast and yeast-like strains isolated from tropical environments. J. Appl. Microbiol. 93 (2002) 1020-1025
8. Camotti-Sartori V., da Silva-Ribeiro R.T., Valdebenito-Sanhueza R.M., Pagnocca F.C., Echeverrigaray S., and Azevedo J.L. Endophytic yeasts and filamentous fungi associated with southern Brazilian apple (Malus domestica) orchards subjected to conventional, integrated or organic cultivation. J. Basic Microbiol. 45 (2005) 397-402
9. Capriotti A., and Ranieri L. Yeasts in greenhouse environment I. From soils, flowers and animals. Archive für Mikrobiologie 48 (1964) 325-331
10. Cocolin L., Bisson L.F., and Mills D.A. Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol. Lett. 189 (2000) 81-87
11. Cocolin L., Aggio D., Manzano M., Cantoni C., and Comi G. An application of PCR-DGGE analysis to profile the yeast populations in raw milk. Int. Dairy J. 12 (2002) 407-411
12. Comitini F., and Ciani M. Survival of inoculated Saccharomyces cerevisiae strain on wine grapes during two vintages. Lett. Appl. Microbiol. 42 (2006) 248-253
13. da Silva E.G., Borges M., de Fatima M.C., Piccoli R.H., and Schwan R.F. Pectinolytic enzymes secreted by yeasts from tropical fruits. FEMS Yeast Res. 5 (2005) 859-865
14. de Llanos Frutos R., Fernàndez-Espinar M.T., and Querol A. Identification of species of the genus Candida by of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Antonie van Leeuwenhoek 85 (2004) 175-185
15. Ercolini D. PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. J. Microbiol. Methods 56 (2004) 297-314
16. Esteve-Zarzoso B., Belloch C., Uruburu F., and Querol A. Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int. J. Syst. Bacteriol. 49 (1999) 329-337
17. Esteve-Zarzoso B., Pèris-Toràn M.J., Ramòn D., and Querol A. Molecular characterisation of Hanseniaspora uvarum. Antonie van Leeuwenhoek 80 (2001) 85-92
18. Gomes N.C.M., Fagbola O., Costa R., Rumjanek N.G., Buchner A., Mendona-Hagler L., and Smalla K. Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Appl. Environ. Microbiol. 69 (2003) 3758-3766
19. Head I.M., Saunders J.R., and Pickup R.W. Microbial evolution, diversity, and ecology; a decade of ribosomal RNA analysis of uncultivated microorganism. Microbiol. Ecol, 35 (1997) 1-21
20. Jumpponen A. Soil fungal community assembly in a primary successional glacier forefront ecosystem as inferred from rDNA sequence analysis. New Phytologyst 158 (2003) 569-578
21. Kent A.D., and Triplett E.W. Microbial communities and their interactions in soil and rhizosphere ecosystems. Annu. Rev. Microbiol. 56 (2002) 211-236
22. Kurtzman C.P., and Fell J.W. Elsevier Science Publishers. The Yeasts: A Taxonomic Study. (3rd edition) (1998), Elsevier Science, Amsterdam 1055-1059
23. Martini A., Ciani M., and Scorzetti G. Direct enumeration and isolation of wine yeasts from grape surfaces. Am. J. Enol. Vitic. 47 (1996) 435-440
24. Masoud W., Cesar L.B., Jespersen L., and Jakobsen M. Yeast involved in fermentation of Coffea arabica in East Africa determined by genotyping and by direct denaturating gradient gel electrophoresis. Yeast 21 (2004) 549-556
25. Nielsen D.S., Honholt S., Tano-Debrah K., and Jespersen L. Yeast populations associated with Ghanaian cocoa fermentations analyzed using denaturing gradient gel electrophoresis (DGGE). Yeast 22 (2005) 271-284
26. Nielsen D.S., Teniola O.D., Ban-Koffi L., Owusu M., Andersson T.S., and Holzapfel W.H. The microbiology of Ghanaian cocoa fermentations analysed using culture-dependent and culture-independent methods. Int. J. Food Microbiol. 114 (2007) 168-186
27. Nyanga L.K., Nout M.J.R., Gadaga T.H., Theelen B., Boekhout T., and Zwietering M.H. Yeasts and lactic acid bacteria microbiota from masau (Ziziphus mauritiana) fruits and their fermented fruit pulp in Zimbabwe. Int. J. Food Microbiol. 120 (2007) 159-166
28. Olasupo N.A., Bakre S., Teniola O.D., and James S.A. Identification of yeasts isolated from Nigerian sugar cane peels. J. Basic Microbiol. 43 (2003) 530-533
29. Prakitchaiwattana C.J., Fleet G.H., and Heard G.M. Application and evaluation of denaturing gradient gel electrophoresis to analyse the yeast ecology of wine grapes. FEMS Yeast Res. 4 (2004) 865-877
30. Rappe M.S., and Giovannini S.J. The uncultured microbial majority. Annu. Rev. Microbiol. 57 (2003) 369-394
31. Sabate J., Cano J., Esteve-Zarzoso B., and Guillamòn J.M. Isolation and identification of yeasts associated with vineyard and winery by RFLP analysis of ribosomal genes and mitochondrial DNA. Microbiological Research 157 (2002) 267-274
32. Santos E.A., Oliveira R.B., Mendonca-Hagler L.C., and Hagler A.N. Yeasts associated with flowers and fruits from a semi-arid region of northeastern Brazil. Rev. Microbiol. 27 (1996) 33-40
33. Trindade R.C., Resende M.A., Silva C.M., and Rosa C.A. Yeasts associated with fresh and frozen pulps of Brazilian tropical fruit. Syst. Appl. Microb 25 (2002) 294-300
34. Vaughan-Martini A., Kurtzman C.P., Meyer S.A., and O'Neill E.B. Two new species in the Pichia guilliermondii clade: Pichia caribbica sp. nov., the ascosporic state of Candida fermentati, and Candida carpophila comb. nov. FEMS Yeast Res. 5 (2005) 463-469