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Volumn 22, Issue 16, 2008, Pages 2242-2255

Genetic identification of yeast 18S rRNA residues required for efficient recruitment of initiator tRNAMet and AUG selection

Author keywords

GCN4 translational control; Ribosome; rRNA; Scanning; Translation initiation

Indexed keywords

MESSENGER RNA; METHIONINE; RIBOSOME RNA; TRANSFER RNA;

EID: 50049130690     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.1696608     Document Type: Article
Times cited : (30)

References (37)
  • 1
    • 0026085424 scopus 로고
    • Suppression of ribosomal reinitiation at upstream open reading frames in amino acid-starved cells forms the basis for GCN4 translational control
    • Abastado, J.P., Miller, P.F., Jackson, B.M., and Hinnebusch, A.G. 1991. Suppression of ribosomal reinitiation at upstream open reading frames in amino acid-starved cells forms the basis for GCN4 translational control. Mol. Cell. Biol. 11: 486-496.
    • (1991) Mol. Cell. Biol , vol.11 , pp. 486-496
    • Abastado, J.P.1    Miller, P.F.2    Jackson, B.M.3    Hinnebusch, A.G.4
  • 2
    • 27144439460 scopus 로고    scopus 로고
    • Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli
    • Abdi, N.M. and Fredrick, K. 2005. Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli. RNA 11: 1624-1632.
    • (2005) RNA , vol.11 , pp. 1624-1632
    • Abdi, N.M.1    Fredrick, K.2
  • 3
    • 33748531313 scopus 로고    scopus 로고
    • Where to begin? The mechanism of translation initiation codon selection in eukaryotes
    • Algire, M.A. and Lorsch, J.R. 2006. Where to begin? The mechanism of translation initiation codon selection in eukaryotes. Curr. Opin. Chem. Biol. 10: 480-486.
    • (2006) Curr. Opin. Chem. Biol , vol.10 , pp. 480-486
    • Algire, M.A.1    Lorsch, J.R.2
  • 5
    • 20444365142 scopus 로고    scopus 로고
    • The cryo-EM structure of a translation initiation complex from Escherichia coli
    • Allen, G.S., Zavialov, A., Gursky, R., Ehrenberg, M., and Frank, J. 2005. The cryo-EM structure of a translation initiation complex from Escherichia coli. Cell 121: 703-712.
    • (2005) Cell , vol.121 , pp. 703-712
    • Allen, G.S.1    Zavialov, A.2    Gursky, R.3    Ehrenberg, M.4    Frank, J.5
  • 6
    • 33745943856 scopus 로고    scopus 로고
    • How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis
    • Antoun, A., Pavlov, M.Y., Lovmar, M., and Ehrenberg, M. 2006. How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis. Mol. Cell 23: 183-193.
    • (2006) Mol. Cell , vol.23 , pp. 183-193
    • Antoun, A.1    Pavlov, M.Y.2    Lovmar, M.3    Ehrenberg, M.4
  • 7
    • 33750488430 scopus 로고    scopus 로고
    • Structural basis for mRNA and tRNA positioning on the ribosome
    • Berk, V., Zhang, W., Pai, R.D., and Cate, J.H. 2006. Structural basis for mRNA and tRNA positioning on the ribosome. Proc. Natl. Acad. Sci. 103: 15830-15834.
    • (2006) Proc. Natl. Acad. Sci , vol.103 , pp. 15830-15834
    • Berk, V.1    Zhang, W.2    Pai, R.D.3    Cate, J.H.4
  • 10
  • 13
    • 27144510561 scopus 로고    scopus 로고
    • Translational regulation of GCN4 and the general amino acid control of yeast
    • Hinnebusch, A.G. 2005a. Translational regulation of GCN4 and the general amino acid control of yeast. Annu. Rev. Microbiol. 59: 407-450.
    • (2005) Annu. Rev. Microbiol , vol.59 , pp. 407-450
    • Hinnebusch, A.G.1
  • 14
    • 27144510561 scopus 로고    scopus 로고
    • Translational regulation of gcn4 and the general amino acid control of yeast
    • Hinnebusch, A.G. 2005b. Translational regulation of gcn4 and the general amino acid control of yeast. Annu. Rev. Microbiol. 59: 407-450.
    • (2005) Annu. Rev. Microbiol , vol.59 , pp. 407-450
    • Hinnebusch, A.G.1
  • 15
    • 50049130501 scopus 로고    scopus 로고
    • Hinnebusch, A.G., Dever, T.E., and Asano, K. 2007. Mechanism of translation initiation in the yeast Saccharomyces cerevisiae. In Translational control in biology and medicine (eds. N.S. Michael Mathews and John W.B. Hershey), pp. 225-268. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • Hinnebusch, A.G., Dever, T.E., and Asano, K. 2007. Mechanism of translation initiation in the yeast Saccharomyces cerevisiae. In Translational control in biology and medicine (eds. N.S. Michael Mathews and John W.B. Hershey), pp. 225-268. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • 16
    • 33646168052 scopus 로고    scopus 로고
    • Yeast initiator tRNA identity elements cooperate to influence multiple steps of translation initiation
    • Kapp, L.D., Kolitz, S.E., and Lorsch, J.R. 2006. Yeast initiator tRNA identity elements cooperate to influence multiple steps of translation initiation. RNA 12: 751-764.
    • (2006) RNA , vol.12 , pp. 751-764
    • Kapp, L.D.1    Kolitz, S.E.2    Lorsch, J.R.3
  • 17
    • 33748582906 scopus 로고    scopus 로고
    • Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
    • Korostelev, A., Trakhanov, S., Laurberg, M., and Noller, H.F. 2006. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126: 1065-1077.
    • (2006) Cell , vol.126 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 18
    • 27944442879 scopus 로고    scopus 로고
    • Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA
    • Lancaster, L. and Noller, H.F. 2005. Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA. Mol. Cell 20: 623-632.
    • (2005) Mol. Cell , vol.20 , pp. 623-632
    • Lancaster, L.1    Noller, H.F.2
  • 19
    • 0345305759 scopus 로고    scopus 로고
    • Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing
    • Lomakin, I.B., Kolupaeva, V.G., Marintchev, A., Wagner, G., and Pestova, T.V. 2003. Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing. Genes & Dev. 17: 2786-2797.
    • (2003) Genes & Dev , vol.17 , pp. 2786-2797
    • Lomakin, I.B.1    Kolupaeva, V.G.2    Marintchev, A.3    Wagner, G.4    Pestova, T.V.5
  • 20
    • 0037675905 scopus 로고    scopus 로고
    • Communication between eukaryotic translation initiation factors 1 and 1A on the yeast small ribosomal subunit
    • Maag, D. and Lorsch, J.R. 2003. Communication between eukaryotic translation initiation factors 1 and 1A on the yeast small ribosomal subunit. J. Mol. Biol. 330: 917-924.
    • (2003) J. Mol. Biol , vol.330 , pp. 917-924
    • Maag, D.1    Lorsch, J.R.2
  • 21
    • 25644436944 scopus 로고    scopus 로고
    • Translation initiation: Structures, mechanisms and evolution
    • Marintchev, A. and Wagner, G. 2004. Translation initiation: Structures, mechanisms and evolution. Q. Rev. Biophys. 37: 197-284.
    • (2004) Q. Rev. Biophys , vol.37 , pp. 197-284
    • Marintchev, A.1    Wagner, G.2
  • 22
    • 0023341242 scopus 로고
    • A segment of GCN4 mRNA containing the upstream AUG codons confers translational control upon a heterologous yeast transcript
    • Mueller, P.P., Harashima, S., and Hinnebusch, A.G. 1987. A segment of GCN4 mRNA containing the upstream AUG codons confers translational control upon a heterologous yeast transcript. Proc. Natl. Acad. Sci. 84: 2863-2867.
    • (1987) Proc. Natl. Acad. Sci , vol.84 , pp. 2863-2867
    • Mueller, P.P.1    Harashima, S.2    Hinnebusch, A.G.3
  • 24
    • 50049088848 scopus 로고    scopus 로고
    • Pestova, T.V., Lorsch, J.R., and Hellen, C.U.T. 2007. The mechanism of translation initiation in eukaryotes. In Translational control in biology and medicine (eds. N.S. Michael Mathews and John W.B. Hershey), pp. 87-128. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • Pestova, T.V., Lorsch, J.R., and Hellen, C.U.T. 2007. The mechanism of translation initiation in eukaryotes. In Translational control in biology and medicine (eds. N.S. Michael Mathews and John W.B. Hershey), pp. 87-128. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • 25
    • 44649095899 scopus 로고    scopus 로고
    • Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes
    • Pisarev, A.V., Kolupaeva, V.G., Yusupov, M.M., Hellen, C.U., and Pestova, T.V. 2008. Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J. 27: 1609-1621.
    • (2008) EMBO J , vol.27 , pp. 1609-1621
    • Pisarev, A.V.1    Kolupaeva, V.G.2    Yusupov, M.M.3    Hellen, C.U.4    Pestova, T.V.5
  • 26
    • 36249023651 scopus 로고    scopus 로고
    • Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation
    • Qin, D., Abdi, N.M., and Fredrick, K. 2007. Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation. RNA 13: 2348-2355.
    • (2007) RNA , vol.13 , pp. 2348-2355
    • Qin, D.1    Abdi, N.M.2    Fredrick, K.3
  • 27
    • 33845228894 scopus 로고    scopus 로고
    • An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome
    • Rakauskaite, R. and Dinman, J.D. 2006. An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome. Mol. Cell. Biol. 26: 8992-9002.
    • (2006) Mol. Cell. Biol , vol.26 , pp. 8992-9002
    • Rakauskaite, R.1    Dinman, J.D.2
  • 30
    • 0024271795 scopus 로고
    • Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli
    • Sigmund, C.D., Ettayebi, M., Borden, A., and Morgan, E.A. 1988. Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli. Methods Enzymol. 164: 673-690.
    • (1988) Methods Enzymol , vol.164 , pp. 673-690
    • Sigmund, C.D.1    Ettayebi, M.2    Borden, A.3    Morgan, E.A.4
  • 31
    • 0035798380 scopus 로고    scopus 로고
    • Structure of the 80S ribosome from Saccharomyces cerevisiae - tRNA-ribosome and subunit-subunit interactions
    • Spahn, C.M., Beckmann, R., Eswar, N., Penczek, P.A., Sali, A., Blobel, G., and Frank, J. 2001a. Structure of the 80S ribosome from Saccharomyces cerevisiae - tRNA-ribosome and subunit-subunit interactions. Cell 107: 373-386.
    • (2001) Cell , vol.107 , pp. 373-386
    • Spahn, C.M.1    Beckmann, R.2    Eswar, N.3    Penczek, P.A.4    Sali, A.5    Blobel, G.6    Frank, J.7
  • 32
    • 0035831269 scopus 로고    scopus 로고
    • Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit
    • Spahn, C.M., Kieft, J.S., Grassucci, R.A., Penczek, P.A., Zhou, K., Doudna, J.A., and Frank, J. 2001b. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit. Science 291: 1959-1962.
    • (2001) Science , vol.291 , pp. 1959-1962
    • Spahn, C.M.1    Kieft, J.S.2    Grassucci, R.A.3    Penczek, P.A.4    Zhou, K.5    Doudna, J.A.6    Frank, J.7
  • 34
    • 4644247805 scopus 로고    scopus 로고
    • Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor
    • Spahn, C.M., Jan, E., Mulder, A., Grassucci, R.A., Sarnow, P., and Frank, J. 2004b. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor. Cell 118: 465-475.
    • (2004) Cell , vol.118 , pp. 465-475
    • Spahn, C.M.1    Jan, E.2    Mulder, A.3    Grassucci, R.A.4    Sarnow, P.5    Frank, J.6
  • 35
    • 50049122195 scopus 로고    scopus 로고
    • Taylor, D.J., Frank, J., and Kinzy, T.G. 2007. Structure and function of the eukaryotic ribosome and elongation factors. In Translational control in biology and medicine (eds. N.S. Michael Mathews and John W.B. Hershey), pp. 59-85. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • Taylor, D.J., Frank, J., and Kinzy, T.G. 2007. Structure and function of the eukaryotic ribosome and elongation factors. In Translational control in biology and medicine (eds. N.S. Michael Mathews and John W.B. Hershey), pp. 59-85. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • 36
    • 0024343499 scopus 로고
    • Mutations in the structural genes for eukaryotic initiation factors 2α and 2β of Saccharomyces cerevisiae disrupt translational control of GCN4 mRNA
    • Williams, N.P., Hinnebusch, A.G., and Donahue, T.F. 1989. Mutations in the structural genes for eukaryotic initiation factors 2α and 2β of Saccharomyces cerevisiae disrupt translational control of GCN4 mRNA. Proc. Natl. Acad. Sci. 86: 7515-7519.
    • (1989) Proc. Natl. Acad. Sci , vol.86 , pp. 7515-7519
    • Williams, N.P.1    Hinnebusch, A.G.2    Donahue, T.F.3
  • 37
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • Yusupova, G.Z., Yusupov, M.M., Cate, J.H., and Noller, H.F. 2001. The path of messenger RNA through the ribosome. Cell 106: 233-241.
    • (2001) Cell , vol.106 , pp. 233-241
    • Yusupova, G.Z.1    Yusupov, M.M.2    Cate, J.H.3    Noller, H.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.