메뉴 건너뛰기




Volumn 8, Issue 1, 2008, Pages

Topology of evolving, mutagenized viral populations: Quasispecies expansion, compression, and operation of negative selection

Author keywords

[No Author keywords available]

Indexed keywords

AZACITIDINE; FLUOROURACIL; GUANIDINE; RIBAVIRIN; MUTAGENIC AGENT; VIRUS RNA;

EID: 49649112207     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-8-207     Document Type: Article
Times cited : (30)

References (86)
  • 1
    • 38349178145 scopus 로고    scopus 로고
    • Virus Evolution.
    • Philadelphia , Lappincott Williams & Wilkins Knipe DM, Howley PM 5th
    • Virus Evolution. E Domingo, Fields Virology Philadelphia, Lappincott Williams & Wilkins, Knipe DM, Howley PM, 5th 2007 Vol.12 389 421
    • (2007) Fields Virology , vol.12 , pp. 389-421
    • Domingo, E.1
  • 5
    • 49649108573 scopus 로고    scopus 로고
    • Comparative Studies of RNA Virus Evolution
    • Oxford , Elsevier Domingo E, Parrish CR, Holland JJ 2nd
    • Comparative Studies of RNA Virus Evolution. EC Holmes, Origins and Evolution of Viruses Oxford, Elsevier, Domingo E, Parrish CR, Holland JJ, 2nd 2008 119 134
    • (2008) Origins and Evolution of Viruses , pp. 119-134
    • Holmes, E.C.1
  • 6
    • 31144465690 scopus 로고    scopus 로고
    • Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population
    • 16327776
    • Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population. M Vignuzzi JK Stone JJ Arnold CE Cameron R Andino, Nature 2006 439 344 348 16327776
    • (2006) Nature , vol.439 , pp. 344-348
    • Vignuzzi, M.1    Stone, J.K.2    Arnold, J.J.3    Cameron, C.E.4    Andino, R.5
  • 7
    • 33745490138 scopus 로고    scopus 로고
    • Increased fidelity reduces poliovirus fitness under selective pressure in mice
    • Increased fidelity reduces poliovirus fitness under selective pressure in mice. JK Pfeiffer K Kirkegaard, PLoS Pathog 2005 1 102 110
    • (2005) PLoS Pathog , vol.1 , pp. 102-110
    • Pfeiffer, J.K.1    Kirkegaard, K.2
  • 8
    • 0030941096 scopus 로고    scopus 로고
    • Evolution of mouse hepatitis virus: Detection and characterization of spike deletion variants during persistent infection
    • 9060655
    • Evolution of mouse hepatitis virus: detection and characterization of spike deletion variants during persistent infection. CL Rowe SC Baker MJ Nathan JO Fleming, J Virol 1997 71 4 2959 2969 9060655
    • (1997) J Virol , vol.71 , Issue.4 , pp. 2959-2969
    • Rowe, C.L.1    Baker, S.C.2    Nathan, M.J.3    Fleming, J.O.4
  • 9
    • 0037784027 scopus 로고    scopus 로고
    • Mechanisms of antiviral treatment efficacy and failure in chronic hepatitis C
    • 12834855
    • Mechanisms of antiviral treatment efficacy and failure in chronic hepatitis C. JM Pawlotsky, Antiviral Res 2003 59 1 1 11 12834855
    • (2003) Antiviral Res , vol.59 , Issue.1 , pp. 1-11
    • Pawlotsky, J.M.1
  • 12
    • 34447320468 scopus 로고    scopus 로고
    • Quasispecies and its impact on viral hepatitis
    • Quasispecies and its impact on viral hepatitis. E Domingo J Gomez, Virus Res 2007
    • (2007) Virus Res
    • Domingo, E.1    Gomez, J.2
  • 14
    • 33947590487 scopus 로고    scopus 로고
    • The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice
    • 17134731
    • The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice. GV Jerzak K Bernard LD Kramer PY Shi GD Ebel, Virology 2007 360 2 469 476 17134731
    • (2007) Virology , vol.360 , Issue.2 , pp. 469-476
    • Jerzak, G.V.1    Bernard, K.2    Kramer, L.D.3    Shi, P.Y.4    Ebel, G.D.5
  • 15
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 3447015
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou M Nei, Mol Biol Evol 1987 4 4 406 425 3447015
    • (1987) Mol Biol Evol , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 16
    • 0031002417 scopus 로고    scopus 로고
    • Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment
    • 9192648
    • Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. K Strimmer A von Haeseler, Proc Natl Acad Sci USA 1997 94 13 6815 6819 9192648
    • (1997) Proc Natl Acad Sci USA , vol.94 , Issue.13 , pp. 6815-6819
    • Strimmer, K.1    Von Haeseler, A.2
  • 17
    • 0032227692 scopus 로고    scopus 로고
    • The foot-and-mouth disease RNA virus as a model in experimental phylogenetics
    • 10943380
    • The foot-and-mouth disease RNA virus as a model in experimental phylogenetics. MA Fares E Barrio N Becerra C Escarmis E Domingo A Moya, Int Microbiol 1998 1 4 311 318 10943380
    • (1998) Int Microbiol , vol.1 , Issue.4 , pp. 311-318
    • Fares, M.A.1    Barrio, E.2    Becerra, N.3    Escarmis, C.4    Domingo, E.5    Moya, A.6
  • 20
    • 11144355800 scopus 로고    scopus 로고
    • Isolation and characterization of RNase LTR sequences of Ty1-copia retrotransposons in common bean (Phaseolus vulgaris L)
    • 15060605
    • Isolation and characterization of RNase LTR sequences of Ty1-copia retrotransposons in common bean (Phaseolus vulgaris L). LM Galindo E Gaitan-Solis P Baccam J Tohme, Genome 2004 47 1 84 95 15060605
    • (2004) Genome , vol.47 , Issue.1 , pp. 84-95
    • Galindo, L.M.1    Gaitan-Solis, E.2    Baccam, P.3    Tohme, J.4
  • 21
    • 0036707426 scopus 로고    scopus 로고
    • Quasispecies in the 5' untranslated genomic region of bovine viral diarrhoea virus from a single individual
    • 12185269
    • Quasispecies in the 5' untranslated genomic region of bovine viral diarrhoea virus from a single individual. LR Jones R Zandomeni EL Weber, J Gen Virol 2002 83 Pt 9 2161 2168 12185269
    • (2002) J Gen Virol , vol.83 , Issue.PART 9 , pp. 2161-2168
    • Jones, L.R.1    Zandomeni, R.2    Weber, E.L.3
  • 22
    • 30344475523 scopus 로고    scopus 로고
    • Analysis of sequential hepatitis a virus strains reveals coexistence of distinct viral subpopulations
    • 16361423
    • Analysis of sequential hepatitis A virus strains reveals coexistence of distinct viral subpopulations. M Costa-Mattioli E Domingo J Cristina, J Gen Virol 2006 87 Pt 1 115 118 16361423
    • (2006) J Gen Virol , vol.87 , Issue.PART 1 , pp. 115-118
    • Costa-Mattioli, M.1    Domingo, E.2    Cristina, J.3
  • 23
    • 0141737150 scopus 로고    scopus 로고
    • Foot-and-mouth disease
    • Foot-and-mouth disease. DJ Rowlands Ed., Virus Res 2003 91 1 161
    • (2003) Virus Res , vol.91 , pp. 1-161
    • Rowlands, D.J.1    Ed2
  • 27
    • 0037235302 scopus 로고    scopus 로고
    • Molecular epidemiology of foot-and-mouth disease virus
    • 12527438
    • Molecular epidemiology of foot-and-mouth disease virus. NJ Knowles AR Samuel, Virus Res 2003 91 1 65 80 12527438
    • (2003) Virus Res , vol.91 , Issue.1 , pp. 65-80
    • Knowles, N.J.1    Samuel, A.R.2
  • 29
    • 9244238208 scopus 로고    scopus 로고
    • Viral Error Catastrophe by Mutagenic Nucleosides
    • 15487935
    • Viral Error Catastrophe by Mutagenic Nucleosides. JP Anderson R Daifuku LA Loeb, Annu Rev Microbiol 2004 58 183 205 15487935
    • (2004) Annu Rev Microbiol , vol.58 , pp. 183-205
    • Anderson, J.P.1    Daifuku, R.2    Loeb, L.A.3
  • 30
    • 30744437878 scopus 로고    scopus 로고
    • Virus entry into error catastrophe as a new antiviral strategy
    • Virus entry into error catastrophe as a new antiviral strategy. E Domingo editor, Virus Res 2005 107 115 228
    • (2005) Virus Res , vol.107 , pp. 115-228
    • Domingo, E.1    Editor2
  • 31
    • 2542455737 scopus 로고    scopus 로고
    • Challenges for the development of ribonucleoside analogues as inducers of error catastrophe
    • 15074710
    • Challenges for the development of ribonucleoside analogues as inducers of error catastrophe. JD Graci CE Cameron, Antivir Chem Chemother 2004 15 1 1 13 15074710
    • (2004) Antivir Chem Chemother , vol.15 , Issue.1 , pp. 1-13
    • Graci, J.D.1    Cameron, C.E.2
  • 32
    • 25144524546 scopus 로고    scopus 로고
    • Invariant aphthovirus consensus nucleotide sequence in the transition to error catastrophe
    • 16002345
    • Invariant aphthovirus consensus nucleotide sequence in the transition to error catastrophe. C Gonzalez-Lopez G Gomez-Mariano C Escarmis E Domingo, Infect Genet Evol 2005 5 4 366 374 16002345
    • (2005) Infect Genet Evol , vol.5 , Issue.4 , pp. 366-374
    • Gonzalez-Lopez, C.1    Gomez-Mariano, G.2    Escarmis, C.3    Domingo, E.4
  • 35
    • 34248577724 scopus 로고    scopus 로고
    • Insights into RNA virus mutant spectrum and lethal mutagenesis events: Replicative interference and complementation by multiple point mutants
    • 17481660
    • Insights into RNA virus mutant spectrum and lethal mutagenesis events: replicative interference and complementation by multiple point mutants. C Perales R Mateo MG Mateu E Domingo, J Mol Biol 2007 369 4 985 1000 17481660
    • (2007) J Mol Biol , vol.369 , Issue.4 , pp. 985-1000
    • Perales, C.1    Mateo, R.2    Mateu, M.G.3    Domingo, E.4
  • 36
    • 23244443638 scopus 로고    scopus 로고
    • Mutagenesis-induced, large fitness variations with an invariant arenavirus consensus genomic nucleotide sequence
    • 16051837
    • Mutagenesis-induced, large fitness variations with an invariant arenavirus consensus genomic nucleotide sequence. A Grande-Perez G Gomez-Mariano PR Lowenstein E Domingo, J Virol 2005 79 16 10451 10459 16051837
    • (2005) J Virol , vol.79 , Issue.16 , pp. 10451-10459
    • Grande-Perez, A.1    Gomez-Mariano, G.2    Lowenstein, P.R.3    Domingo, E.4
  • 37
    • 0025983849 scopus 로고
    • Effects of defective interfering viruses on virus replication and pathogenesis in vitro and in vivo
    • 1957718
    • Effects of defective interfering viruses on virus replication and pathogenesis in vitro and in vivo. L Roux AE Simon JJ Holland, Adv Virus Res 1991 40 181 211 1957718
    • (1991) Adv Virus Res , vol.40 , pp. 181-211
    • Roux, L.1    Simon, A.E.2    Holland, J.J.3
  • 38
    • 0038278911 scopus 로고    scopus 로고
    • Mutagenesis versus inhibition in the efficiency of extinction of foot-and-mouth disease virus
    • 12768034
    • Mutagenesis versus inhibition in the efficiency of extinction of foot-and-mouth disease virus. N Pariente A Airaksinen E Domingo, J Virol 2003 77 12 7131 7138 12768034
    • (2003) J Virol , vol.77 , Issue.12 , pp. 7131-7138
    • Pariente, N.1    Airaksinen, A.2    Domingo, E.3
  • 39
    • 0033850837 scopus 로고    scopus 로고
    • Response of foot-and-mouth disease virus to increased mutagenesis: Influence of viral load and fitness in loss of infectivity
    • 10954530
    • Response of foot-and-mouth disease virus to increased mutagenesis: influence of viral load and fitness in loss of infectivity. S Sierra M Davila PR Lowenstein E Domingo, J Virol 2000 74 18 8316 8323 10954530
    • (2000) J Virol , vol.74 , Issue.18 , pp. 8316-8323
    • Sierra, S.1    Davila, M.2    Lowenstein, P.R.3    Domingo, E.4
  • 40
    • 33846813925 scopus 로고    scopus 로고
    • Foot-and-mouth disease virus mutant with decreased sensitivity to ribavirin: Implications for error catastrophe
    • 17151116
    • Foot-and-mouth disease virus mutant with decreased sensitivity to ribavirin: implications for error catastrophe. M Sierra A Airaksinen C Gonzalez-Lopez R Agudo A Arias E Domingo, J Virol 2007 81 4 2012 2024 17151116
    • (2007) J Virol , vol.81 , Issue.4 , pp. 2012-2024
    • Sierra, M.1    Airaksinen, A.2    Gonzalez-Lopez, C.3    Agudo, R.4    Arias, A.5    Domingo, E.6
  • 41
    • 0034813056 scopus 로고    scopus 로고
    • Efficient virus extinction by combinations of a mutagen and antiviral inhibitors
    • 11559805
    • Efficient virus extinction by combinations of a mutagen and antiviral inhibitors. N Pariente S Sierra PR Lowenstein E Domingo, J Virol 2001 75 20 9723 9730 11559805
    • (2001) J Virol , vol.75 , Issue.20 , pp. 9723-9730
    • Pariente, N.1    Sierra, S.2    Lowenstein, P.R.3    Domingo, E.4
  • 42
    • 11844257643 scopus 로고    scopus 로고
    • Action of mutagenic agents and antiviral inhibitors on foot-and-mouth disease virus
    • 15649564
    • Action of mutagenic agents and antiviral inhibitors on foot-and-mouth disease virus. N Pariente S Sierra A Airaksinen, Virus Res 2005 107 2 183 193 15649564
    • (2005) Virus Res , vol.107 , Issue.2 , pp. 183-193
    • Pariente, N.1    Sierra, S.2    Airaksinen, A.3
  • 43
    • 0019186617 scopus 로고
    • Nucleotide sequence heterogeneity of the RNA from a natural population of foot-and-mouth-disease virus
    • 6260578
    • Nucleotide sequence heterogeneity of the RNA from a natural population of foot-and-mouth-disease virus. E Domingo M Davila J Ortin, Gene 1980 11 3-4 333 346 6260578
    • (1980) Gene , vol.11 , Issue.3-4 , pp. 333-346
    • Domingo, E.1    Davila, M.2    Ortin, J.3
  • 44
    • 0020544508 scopus 로고
    • Multiple genetic variants arise in the course of replication of foot-and-mouth disease virus in cell culture
    • 6310859
    • Multiple genetic variants arise in the course of replication of foot-and-mouth disease virus in cell culture. F Sobrino M Davila J Ortin E Domingo, Virology 1983 128 2 310 318 6310859
    • (1983) Virology , vol.128 , Issue.2 , pp. 310-318
    • Sobrino, F.1    Davila, M.2    Ortin, J.3    Domingo, E.4
  • 45
    • 0030245788 scopus 로고    scopus 로고
    • Long-term, large-population passage of aphthovirus can generate and amplify defective noninterfering particles deleted in the leader protease gene
    • 8806535
    • Long-term, large-population passage of aphthovirus can generate and amplify defective noninterfering particles deleted in the leader protease gene. N Charpentier M Davila E Domingo C Escarmis, Virology 1996 223 1 10 18 8806535
    • (1996) Virology , vol.223 , Issue.1 , pp. 10-18
    • Charpentier, N.1    Davila, M.2    Domingo, E.3    Escarmis, C.4
  • 46
    • 6344239125 scopus 로고    scopus 로고
    • Evolutionary transition toward defective RNAs that are infectious by complementation
    • 15479809
    • Evolutionary transition toward defective RNAs that are infectious by complementation. J Garcia-Arriaza SC Manrubia M Toja E Domingo C Escarmis, J Virol 2004 78 21 11678 11685 15479809
    • (2004) J Virol , vol.78 , Issue.21 , pp. 11678-11685
    • Garcia-Arriaza, J.1    Manrubia, S.C.2    Toja, M.3    Domingo, E.4    Escarmis, C.5
  • 48
    • 38349170440 scopus 로고    scopus 로고
    • Repeated bottleneck transfers can lead to non-cytocidal forms of a cytopahic virus. Implications for viral extinction.
    • 18158159
    • Repeated bottleneck transfers can lead to non-cytocidal forms of a cytopahic virus. Implications for viral extinction. C Escarmís E Lázaro A A. E Domingo, J Mol Biol 2008 376 2 367 379 18158159
    • (2008) J Mol Biol , vol.376 , Issue.2 , pp. 367-379
    • Escarmis, C.1    Lazaro E2    Domingo, E.3
  • 49
    • 8744222695 scopus 로고    scopus 로고
    • Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA
    • 15294895
    • Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA. C Ferrer-Orta A Arias R Perez-Luque C Escarmis E Domingo N Verdaguer, J Biol Chem 2004 279 45 47212 47221 15294895
    • (2004) J Biol Chem , vol.279 , Issue.45 , pp. 47212-47221
    • Ferrer-Orta, C.1    Arias, A.2    Perez-Luque, R.3    Escarmis, C.4    Domingo, E.5    Verdaguer, N.6
  • 51
    • 0032842518 scopus 로고    scopus 로고
    • Genomic nucleotide sequence of a foot-and-mouth disease virus clone and its persistent derivatives. Implications for the evolution of viral quasispecies during a persistent infection
    • 10518712
    • Genomic nucleotide sequence of a foot-and-mouth disease virus clone and its persistent derivatives. Implications for the evolution of viral quasispecies during a persistent infection. M Toja C Escarmis E Domingo, Virus Res 1999 64 2 161 171 10518712
    • (1999) Virus Res , vol.64 , Issue.2 , pp. 161-171
    • Toja, M.1    Escarmis, C.2    Domingo, E.3
  • 53
    • 0038722333 scopus 로고    scopus 로고
    • Curing of foot-and-mouth disease virus from persistently infected cells by ribavirin involves enhanced mutagenesis
    • 12842623
    • Curing of foot-and-mouth disease virus from persistently infected cells by ribavirin involves enhanced mutagenesis. A Airaksinen N Pariente L Menendez-Arias E Domingo, Virology 2003 311 2 339 349 12842623
    • (2003) Virology , vol.311 , Issue.2 , pp. 339-349
    • Airaksinen, A.1    Pariente, N.2    Menendez-Arias, L.3    Domingo, E.4
  • 54
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 22 4673 4680 7984417
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 55
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucl Acids SympSer 1999 41 95 98
    • (1999) Nucl Acids SympSer , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 56
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • 15260895
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. S Kumar K Tamura M Nei, Brief Bioinform 2004 5 2 150 163 15260895
    • (2004) Brief Bioinform , vol.5 , Issue.2 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 57
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • 7463489
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. M Kimura, J Mol Evol 1980 16 2 111 120 7463489
    • (1980) J Mol Evol , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 58
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Confidence limits on phylogenies: an approach using the bootstrap. J Felsenstein, Evolution 1985 39 738 791
    • (1985) Evolution , vol.39 , pp. 738-791
    • Felsenstein, J.1
  • 60
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • 8336541
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. K Tamura M Nei, Mol Biol Evol 1993 10 3 512 526 8336541
    • (1993) Mol Biol Evol , vol.10 , Issue.3 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 61
    • 33645816587 scopus 로고    scopus 로고
    • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
    • 16563161
    • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. TM Keane CJ Creevey MM Pentony TJ Naughton JO McLnerney, BMC Evol Biol 2006 6 29 16563161
    • (2006) BMC Evol Biol , vol.6 , pp. 29
    • Keane, T.M.1    Creevey, C.J.2    Pentony, M.M.3    Naughton, T.J.4    McLnerney, J.O.5
  • 62
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online - A web server for fast maximum likelihood-based phylogenetic inference
    • 15980534
    • PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. S Guindon F Lethiec P Duroux O Gascuel, Nucleic Acids Res 2005 33 Web Server issue W557 9 15980534
    • (2005) Nucleic Acids Res , vol.33 , Issue.WEB SERVER ISSUE , pp. 557-559
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 63
    • 49649094558 scopus 로고    scopus 로고
    • Phylogeny.fr. http://www.phylogeny.fr/phylo_cgi/phyml
    • Phylogeny.fr
  • 64
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • 16785212
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. M Anisimova O Gascuel, Syst Biol 2006 55 4 539 552 16785212
    • (2006) Syst Biol , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 66
    • 84888108448 scopus 로고    scopus 로고
    • HCV sequence database. http://hcv.lanl.gov/content/sequence/SNAP/ perlsnap.html
    • HCV Sequence Database
  • 68
    • 0032825011 scopus 로고    scopus 로고
    • K-Estimator: Calculation of the number of nucleotide substitutions per site and the confidence intervals
    • 10498777
    • K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals. JM Comeron, Bioinformatics 1999 15 9 763 764 10498777
    • (1999) Bioinformatics , vol.15 , Issue.9 , pp. 763-764
    • Comeron, J.M.1
  • 69
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package
    • PHYLIP - Phylogeny inference package. J Felsenstein, Cladistics 1989 5 164 166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 70
    • 0037108885 scopus 로고    scopus 로고
    • Error catastrophe and antiviral strategy
    • 12370416
    • Error catastrophe and antiviral strategy. M Eigen, Proc Natl Acad Sci USA 2002 99 21 13374 13376 12370416
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.21 , pp. 13374-13376
    • Eigen, M.1
  • 71
    • 0036376657 scopus 로고    scopus 로고
    • Quasispecies, error catastrophe, and the antiviral activity of ribavirin
    • 12127780
    • Quasispecies, error catastrophe, and the antiviral activity of ribavirin. JD Graci CE Cameron, Virology 2002 298 2 175 180 12127780
    • (2002) Virology , vol.298 , Issue.2 , pp. 175-180
    • Graci, J.D.1    Cameron, C.E.2
  • 72
    • 0023001243 scopus 로고
    • Production of guanidine-resistant and -dependent poliovirus mutants from cloned cDNA: Mutations in polypeptide 2C are directly responsible for altered guanidine sensitivity
    • 3022012
    • Production of guanidine-resistant and -dependent poliovirus mutants from cloned cDNA: mutations in polypeptide 2C are directly responsible for altered guanidine sensitivity. SE Pincus E Wimmer, J Virol 1986 60 793 796 3022012
    • (1986) J Virol , vol.60 , pp. 793-796
    • Pincus, S.E.1    Wimmer, E.2
  • 73
    • 0025284804 scopus 로고
    • Mutation frequencies at defined single codon sites in vesicular stomatitis virus and poliovirus can be increased only slightly by chemical mutagenesis.
    • 1695258
    • Mutation frequencies at defined single codon sites in vesicular stomatitis virus and poliovirus can be increased only slightly by chemical mutagenesis. JJ Holland E Domingo JC de la Torre DA Steinhauer, J Virol 1990 64 3960 3962 1695258
    • (1990) J Virol , vol.64 , pp. 3960-3962
    • Holland, J.J.1    Domingo, E.2    De La Torre, J.C.3    Steinhauer, D.A.4
  • 74
    • 20644470543 scopus 로고    scopus 로고
    • Combination of a mutagenic agent with a reverse transcriptase inhibitor results in systematic inhibition of HIV-1 infection
    • 15939449
    • Combination of a mutagenic agent with a reverse transcriptase inhibitor results in systematic inhibition of HIV-1 infection. N Tapia G Fernandez M Parera G Gomez-Mariano B Clotet M Quinones-Mateu E Domingo MA Martinez, Virology 2005 338 1 1 8 15939449
    • (2005) Virology , vol.338 , Issue.1 , pp. 1-8
    • Tapia, N.1    Fernandez, G.2    Parera, M.3    Gomez-Mariano, G.4    Clotet, B.5    Quinones-Mateu, M.6    Domingo, E.7    Martinez, M.A.8
  • 75
    • 0036789885 scopus 로고    scopus 로고
    • Molecular indetermination in the transition to error catastrophe: Systematic elimination of lymphocytic choriomeningitis virus through mutagenesis does not correlate linearly with large increases in mutant spectrum complexity
    • 12215495
    • Molecular indetermination in the transition to error catastrophe: systematic elimination of lymphocytic choriomeningitis virus through mutagenesis does not correlate linearly with large increases in mutant spectrum complexity. A Grande-Perez S Sierra MG Castro E Domingo PR Lowenstein, Proc Natl Acad Sci U S A 2002 99 20 12938 12943 12215495
    • (2002) Proc Natl Acad Sci U S a , vol.99 , Issue.20 , pp. 12938-12943
    • Grande-Perez, A.1    Sierra, S.2    Castro, M.G.3    Domingo, E.4    Lowenstein, P.R.5
  • 76
    • 15544380169 scopus 로고    scopus 로고
    • High mutation rates, bottlenecks, and robustness of RNA viral quasispecies
    • 15777632
    • High mutation rates, bottlenecks, and robustness of RNA viral quasispecies. SC Manrubia C Escarmis E Domingo E Lazaro, Gene 2005 347 2 273 282 15777632
    • (2005) Gene , vol.347 , Issue.2 , pp. 273-282
    • Manrubia, S.C.1    Escarmis, C.2    Domingo, E.3    Lazaro, E.4
  • 77
    • 0036301071 scopus 로고    scopus 로고
    • Resistance to extinction of low fitness virus subjected to plaque-to-plaque transfers: Diversification by mutation clustering
    • 11812137
    • Resistance to extinction of low fitness virus subjected to plaque-to-plaque transfers: diversification by mutation clustering. C Escarmis G Gomez-Mariano M Davila E Lazaro E Domingo, J Mol Biol 2002 315 4 647 661 11812137
    • (2002) J Mol Biol , vol.315 , Issue.4 , pp. 647-661
    • Escarmis, C.1    Gomez-Mariano, G.2    Davila, M.3    Lazaro, E.4    Domingo, E.5
  • 78
    • 17144461473 scopus 로고    scopus 로고
    • Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet
    • 9878424
    • Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet. C Escarmis M Davila E Domingo, J Mol Biol 1999 285 2 495 505 9878424
    • (1999) J Mol Biol , vol.285 , Issue.2 , pp. 495-505
    • Escarmis, C.1    Davila, M.2    Domingo, E.3
  • 80
    • 50549201557 scopus 로고
    • The relation of recombination to mutational advance.
    • The relation of recombination to mutational advance. HJ Muller, Mutat Res 1964 1 2 9
    • (1964) Mutat Res , vol.1 , pp. 2-9
    • Muller, H.J.1
  • 81
    • 11844274684 scopus 로고    scopus 로고
    • The error threshold
    • 15649558
    • The error threshold. CK Biebricher M Eigen, Virus Res 2005 107 2 117 127 15649558
    • (2005) Virus Res , vol.107 , Issue.2 , pp. 117-127
    • Biebricher, C.K.1    Eigen, M.2
  • 82
    • 33847247125 scopus 로고    scopus 로고
    • Theory of lethal mutagenesis for viruses
    • 17202214
    • Theory of lethal mutagenesis for viruses. JJ Bull R Sanjuan CO Wilke, J Virol 2007 81 6 2930 2939 17202214
    • (2007) J Virol , vol.81 , Issue.6 , pp. 2930-2939
    • Bull, J.J.1    Sanjuan, R.2    Wilke, C.O.3
  • 83
    • 47749096802 scopus 로고    scopus 로고
    • Lethal Mutagenesis
    • Amsterdan, San Diego , Elsevier (In Press) Domingo E, Parrish C, Holland JJ 2nd
    • Lethal Mutagenesis. JJ Bull CO Wilke, Origin and evolution of viruses Amsterdan, San Diego, Elsevier (In Press), Domingo E, Parrish C, Holland JJ, 2nd 2008
    • (2008) Origin and Evolution of Viruses
    • Bull, J.J.1    Wilke, C.O.2
  • 84
    • 84884760124 scopus 로고    scopus 로고
    • Early Replication: Origin and Evolution
    • Amsterdan, San Diego , Elsevier (In press) Domingo E, Parrish C, Holland JJ 2nd
    • Early Replication: Origin and Evolution. P Schuster PF Stadler, Origin and Evolution of Viruses Amsterdan, San Diego, Elsevier (In press), Domingo E, Parrish C, Holland JJ, 2nd 2008
    • (2008) Origin and Evolution of Viruses
    • Schuster, P.1    Stadler, P.F.2
  • 85
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • 3444411
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. M Nei T Gojobori, Mol Biol Evol 1986 3 5 418 426 3444411
    • (1986) Mol Biol Evol , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.