Analysis of sequential hepatitis A virus strains reveals coexistence of distinct viral subpopulations

Journal of General Virology

Volumn 87, Issue 1, 2006, Pages 115-118

  Costa Mattioli, Mauro ^a   Domingo, Esteban ^b   Cristina, Juan ^b,c  

^a MCGILL UNIVERSITY   (Canada)

^b UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^c Facultad de Ciencias   (Uruguay)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIGENIC VARIATION; ARTICLE; CELL CULTURE; DISEASE COURSE; FRANCE; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HEPATITIS A VIRUS; IN VIVO STUDY; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PICORNAVIRUS; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES COEXISTENCE; STRAIN DIFFERENCE; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS STRAIN;

HEPATITIS A; HEPATITIS A VIRUS; HUMANS; PHENOTYPE; PHYLOGENY; VARIATION (GENETICS); VIRAL STRUCTURAL PROTEINS;

HEPATITIS A VIRUS; PICORNAVIRIDAE;

EID: 30344475523     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81286-0     Document Type: Article

References (21)

1. Agol, V. A. (2002). Picornavirus genome: an overview. In Molecular Biology of Picornaviruses, pp. 127-148. Edited by B. Semler & E. Wimmer. Washington, DC: ASM Press.
2. Baccam, P., Thompson, R. J., Fedrigo, O., Carpenter, S. & Cornette, J. L. (2001). PAQ: partition analysis of quasispecies. Bioinformatics 17, 16-22.
3. Baccam, P., Thompson, R. J., Li, Y. & 7 other authors (2003). Subpopulations of equine infectious anemia virus Rev coexist in vivo and differ in phenotype. J Virol 77, 12122-12131.
4. Costa-Mattioli, M., Cristina, J., Romero, H. & 12 other authors (2002). Molecular evolution of hepatitis A virus: a new classification based on the complete VP1 protein. J Virol 76, 9516-9525.
5. Costa-Mattioli, M., Ferre, V., Casane, D. & 7 other authors (2003). Evidence of recombination in natural populations of hepatitis A virus. Virology 311, 51-59.
6. Domingo, E., Biebricher, C., Eigen, M. & Holland, J. J. (2001). Quasispecies and RNA Virus Evolution: Principles and Consequences. Austin, TX: Landes Bioscience.
7. Felsenstein, J. (1993). PHYLIP (phylogeny inference package) version 3.572c. Department of Genome Sciences, University of Washington, Seattle, USA.
8. Kumar, S., Tamura, K. & Nei, M. (1994). MEGA: molecular evolutionary genetics analysis software for microcomputers. Comput Appl Biosci 10, 189-191.
9. Palmenberg, A. C. (1989). Sequence alignments of picornaviral capsid proteins. In Molecular Aspects of Picornaviral Infection and Detection. Edited by B. L. Semler & E. Ehenfeld. Washington, DC: American Society for Microbiology.
10. Papathanasopoulos, M. A., Hunt, G. M. & Tiemessen, C. T. (2003). Evolution and diversity of HIV-1 in Africa - a review. Virus Genes 26, 151-163.
11. Robertson, B. H., Jansen, R. W., Khanna, B. & 10 other authors (1992). Genetic relatedness of hepatitis A virus strains recovered from different geographical regions. J Gen Virol 73, 1365-1377.
12. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
13. Sanchez, G., Bosch, A., Gomez-Mariano, G., Domingo, E. & Pinto, R. M. (2003a). Evidence for quasispecies distributions in the human hepatitis A virus genome. Virology 315, 34-42.
14. Sanchez, G., Bosch, A. & Pinto, R. M. (2003b). Genome variability and capsid structural constraints of hepatitis A virus. J Virol 77, 452-459.
15. Shapshak, P., Segan, D. M., Crandall, K. A. & 7 other authors (1999). Independent evolution of HIV type 1 in different brain regions. AIDS Res Hum Retroviruses 15, 811-820.
16. Sneath, P. H. A. & Sokal, R. R. (1973). Numerical Taxonomy. San Francisco: Freeman.
17. Swofford, D. L. (1999). PAUP*. Phylogenetic Analysis Using Parsimony (and Other methods), version 4. Sunderland, MA: Sinauer Associates.
18. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
19. Ticehurst, J., Cohen, J. I., Feinstone, S. M., Purcell, R. H., Jansen, R. W. & Lemon, S. M. (1989). Replication of hepatitis A virus: new ideas from studies with cloned cDNA. In Molecular Aspects of Picornaviral Infection and Detection, pp. 27-50. Edited by B. L. Semler & E. Ehenfeld. Washington, DC: American Society for Microbiology.
20. Van Regenmortel, M. H. V. (2000). In Virus Taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses. Edited by M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle & R. B. Wickner. San Diego: Academic Press.
21. Wimmer, E. & Murdin, A. (1991). Hepatitis A and the molecular biology of picornaviruses: a case for a new genus of the family Picornaviridae. In Viral Hepatitis and Liver Disease, pp. 1-41. Edited by F. B. Hollinger, S. M. Lemon & H. S. Margolis. Baltimore: Williams & Wilkins.