-
1
-
-
0035106702
-
A general method for the quantitative analysis of functional chimeras: Applications from site-directed mutagenesis and macromolecular association
-
Luong, T. N., and Kirsch, J. F. (2001) A general method for the quantitative analysis of functional chimeras: Applications from site-directed mutagenesis and macromolecular association, Protein Sci. 10, 581-591.
-
(2001)
Protein Sci.
, vol.10
, pp. 581-591
-
-
Luong, T.N.1
Kirsch, J.F.2
-
2
-
-
0028908425
-
Decreasing the basicity of the active site base, Lys258, of Escherichia coli aspartate aminotransferase by replacement with gamma thialysine
-
Gloss, L. M., and Kirsch, J. F. (1995) Decreasing the basicity of the active site base, Lys258, of Escherichia coli aspartate aminotransferase by replacement with gamma thialysine, Biochemistry 34, 3990-3998.
-
(1995)
Biochemistry
, vol.34
, pp. 3990-3998
-
-
Gloss, L.M.1
Kirsch, J.F.2
-
3
-
-
0027420413
-
Escherichia coli aromatic amino acid aminotransferase: Characterization and comparison with aspartate aminotransferase
-
Hayashi, H., Inoue, K., Nagata, T., Kuramitsu, S., and Kagamiyama, H. (1993) Escherichia coli aromatic amino acid aminotransferase: Characterization and comparison with aspartate aminotransferase, Biochemistry 32, 12229-12239.
-
(1993)
Biochemistry
, vol.32
, pp. 12229-12239
-
-
Hayashi, H.1
Inoue, K.2
Nagata, T.3
Kuramitsu, S.4
Kagamiyama, H.5
-
4
-
-
0035471134
-
Enzyme redesign
-
Penning, T. M., and Jez, J. M. (2001) Enzyme redesign, Chem. Rev. 101, 3027-3046.
-
(2001)
Chem. Rev.
, vol.101
, pp. 3027-3046
-
-
Penning, T.M.1
Jez, J.M.2
-
5
-
-
0038625074
-
Mimicking natural evolution in vitro: An N-acetylneuraminate lyase mutant with an increased dihydrodipicolinate synthase activity
-
Joerger, A. C., Mayer, S., and Fersht, A. R. (2003) Mimicking natural evolution in vitro: an N-acetylneuraminate lyase mutant with an increased dihydrodipicolinate synthase activity, Proc. Natl. Acad. Sci. U.S.A. 100, 5694-5699.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 5694-5699
-
-
Joerger, A.C.1
Mayer, S.2
Fersht, A.R.3
-
6
-
-
0038047895
-
Engineering a "methionine clamp" into Src family kinases enhances specificity toward unnatural ATP analogues
-
Ulrich, S. M., Kenski, D. M., and Shokat, K. M. (2003) Engineering a "methionine clamp" into Src family kinases enhances specificity toward unnatural ATP analogues, Biochemistry 42, 7915-7921.
-
(2003)
Biochemistry
, vol.42
, pp. 7915-7921
-
-
Ulrich, S.M.1
Kenski, D.M.2
Shokat, K.M.3
-
7
-
-
1842577654
-
Computational redesign of protein-protein interaction specificity
-
Kortemme, T., Joachimiak, L. A., Bullock, A. N., Schuler, A. D., Stoddard, B. L., and Baker, D. (2004) Computational redesign of protein-protein interaction specificity, Nat. Struct. Mol. Biol. 11, 371-379.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 371-379
-
-
Kortemme, T.1
Joachimiak, L.A.2
Bullock, A.N.3
Schuler, A.D.4
Stoddard, B.L.5
Baker, D.6
-
8
-
-
0041429626
-
Conversion of a PLP-dependent racemase into an aldolase by a single active site mutation
-
Seebeck, F. P., and Hilvert, D. (2003) Conversion of a PLP-dependent racemase into an aldolase by a single active site mutation, J. Am. Chem. Soc. 125, 10158-10159.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 10158-10159
-
-
Seebeck, F.P.1
Hilvert, D.2
-
9
-
-
0029079958
-
Redesign of the substrate specificity of Escherichia coli aspartate aminotransferase to that of Escherichia coli tyrosine aminotransferase by homology modeling and site-directed mutagenesis
-
Onuffer, J. J., and Kirsch, J. F. (1995) Redesign of the substrate specificity of Escherichia coli aspartate aminotransferase to that of Escherichia coli tyrosine aminotransferase by homology modeling and site-directed mutagenesis, Protein Sci. 4, 1750-1757.
-
(1995)
Protein Sci.
, vol.4
, pp. 1750-1757
-
-
Onuffer, J.J.1
Kirsch, J.F.2
-
10
-
-
1342310509
-
Directed evolution relieves product inhibition and confers in vivo function to a rationally designed tyrosine aminotransferase
-
Rothman, S. C., Voorhies, M., and Kirsch, J. F. (2004) Directed evolution relieves product inhibition and confers in vivo function to a rationally designed tyrosine aminotransferase, Protein Sci. 13, 763-772.
-
(2004)
Protein Sci.
, vol.13
, pp. 763-772
-
-
Rothman, S.C.1
Voorhies, M.2
Kirsch, J.F.3
-
11
-
-
0037470619
-
How does an enzyme evolved in vitro compare to naturally occurring homologs possessing the targeted function? Tyrosine aminotransferase from aspartate aminotransferase
-
Rothman, S. C., and Kirsch, J. F. (2003) How does an enzyme evolved in vitro compare to naturally occurring homologs possessing the targeted function? Tyrosine aminotransferase from aspartate aminotransferase, J. Mol. Biol. 327, 593-608.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 593-608
-
-
Rothman, S.C.1
Kirsch, J.F.2
-
12
-
-
0025125731
-
Reversible dissociation and unfolding of aspartate aminotransferase from Escherichia coli: Characterization of a monomeric intermediate
-
Herold, M., and Kirschner, K. (1990) Reversible dissociation and unfolding of aspartate aminotransferase from Escherichia coli: Characterization of a monomeric intermediate, Biochemistry 29, 1907-1913.
-
(1990)
Biochemistry
, vol.29
, pp. 1907-1913
-
-
Herold, M.1
Kirschner, K.2
-
13
-
-
0029981787
-
The reaction catalyzed by Escherichia coli aspartate aminotransferase has multiple partially rate-determining steps, while that catalyzed by the Y225F mutant is dominated by ketimine hydrolysis
-
Goldberg, J. M., and Kirsch, J. F. (1996) The reaction catalyzed by Escherichia coli aspartate aminotransferase has multiple partially rate-determining steps, while that catalyzed by the Y225F mutant is dominated by ketimine hydrolysis, Biochemistry 35, 5280-5291.
-
(1996)
Biochemistry
, vol.35
, pp. 5280-5291
-
-
Goldberg, J.M.1
Kirsch, J.F.2
-
14
-
-
0031281419
-
A continuous coupled spectrophotometric assay for tyrosine aminotransferase activity with aromatic and other nonpolar amino acids
-
Luong, T. N., and Kirsch, J. F. (1997) A continuous coupled spectrophotometric assay for tyrosine aminotransferase activity with aromatic and other nonpolar amino acids, Anal. Biochem. 253, 46-49.
-
(1997)
Anal. Biochem.
, vol.253
, pp. 46-49
-
-
Luong, T.N.1
Kirsch, J.F.2
-
15
-
-
0029124159
-
Alternating arginine-modulated substrate specificity in an engineered tyrosine aminotransferase
-
Malashkevich, V. N., Onuffer, J. J., Kirsch, J. F., and Jansonius, J. N. (1995) Alternating arginine-modulated substrate specificity in an engineered tyrosine aminotransferase, Nat. Struct. Biol. 2, 548-553.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 548-553
-
-
Malashkevich, V.N.1
Onuffer, J.J.2
Kirsch, J.F.3
Jansonius, J.N.4
-
16
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
17
-
-
0035788101
-
Implementation of molecular replacement in AMoRe
-
Navaza, J. (2001) Implementation of molecular replacement in AMoRe, Acta Crystallogr. D57, 1367-1372.
-
(2001)
Acta Crystallogr. D
, vol.57
, pp. 1367-1372
-
-
Navaza, J.1
-
18
-
-
0028174289
-
Crystal structures of Escherichia coli aspartate aminotransferase in two conformations. Comparison of an unliganded open and two liganded closed forms
-
Jager, J., Moser, M., Sauder, U., and Jansonius, J. N. (1994) Crystal structures of Escherichia coli aspartate aminotransferase in two conformations. Comparison of an unliganded open and two liganded closed forms, J. Mol. Biol. 239, 285-305.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 285-305
-
-
Jager, J.1
Moser, M.2
Sauder, U.3
Jansonius, J.N.4
-
19
-
-
84889120137
-
Improved methods for building protein models in electron-density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron-density maps and the location of errors in these models, Acta Crystallogr. A47, 110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
20
-
-
0035182073
-
Use of TLS parameters to model anisotropic displacements in macromolecular refinement
-
Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Use of TLS parameters to model anisotropic displacements in macromolecular refinement, Acta Crystallogr. D57, 122-133.
-
(2001)
Acta Crystallogr. D
, vol.57
, pp. 122-133
-
-
Winn, M.D.1
Isupov, M.N.2
Murshudov, G.N.3
-
21
-
-
0015147278
-
The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli
-
Lowry, O. H., Carter, J., Ward, J. B., and Glaser, L. (1971) The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli, J. Biol. Chem. 246, 6511-6521.
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 6511-6521
-
-
Lowry, O.H.1
Carter, J.2
Ward, J.B.3
Glaser, L.4
-
22
-
-
0014907747
-
Amino acid pool of Escherichia coli during the different phases of growth
-
Raunio, R., and Rosenqvist, H. (1970) Amino acid pool of Escherichia coli during the different phases of growth, Acta Chem. Scand. 24, 2737-2744.
-
(1970)
Acta Chem. Scand.
, vol.24
, pp. 2737-2744
-
-
Raunio, R.1
Rosenqvist, H.2
-
23
-
-
0035846958
-
In vitro evolution of β-glucuronidase into a β-galactosidase proceeds through non-specific intermediates
-
Matsumura, I., and Ellington, A. D. (2001) In vitro evolution of β-glucuronidase into a β-galactosidase proceeds through non-specific intermediates, J. Mol. Biol. 305, 331-339.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 331-339
-
-
Matsumura, I.1
Ellington, A.D.2
-
24
-
-
0032510667
-
Directed evolution of an aspartate aminotransferase with new substrate specificities
-
Yano, T., Oue, S., and Kagamiyama, H. (1998) Directed evolution of an aspartate aminotransferase with new substrate specificities, Proc. Natl. Acad. Sci. U.S.A. 95, 5511-5515.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 5511-5515
-
-
Yano, T.1
Oue, S.2
Kagamiyama, H.3
-
25
-
-
0036892433
-
Quantitative chimeric analysis of six specificity determinants that differentiate Escherichia coli aspartate from tyrosine aminotransferase
-
Shaffer, W. A., Luong, T. N., Rothman, S. C., and Kirsch, J. F. (2002) Quantitative chimeric analysis of six specificity determinants that differentiate Escherichia coli aspartate from tyrosine aminotransferase, Protein Sci. 11, 2848-2859.
-
(2002)
Protein Sci.
, vol.11
, pp. 2848-2859
-
-
Shaffer, W.A.1
Luong, T.N.2
Rothman, S.C.3
Kirsch, J.F.4
-
26
-
-
0026767761
-
Domain closure in mitochondrial aspartate aminotransferase
-
McPhalen, C. A., Vincent, M. G., Picot, D., Jansonius, J. N., Lesk, A. M., and Chothia, C. (1992) Domain closure in mitochondrial aspartate aminotransferase, J. Mol. Biol. 227, 197-213.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 197-213
-
-
McPhalen, C.A.1
Vincent, M.G.2
Picot, D.3
Jansonius, J.N.4
Lesk, A.M.5
Chothia, C.6
-
27
-
-
0028351955
-
Three-dimensional structure of a mutant E. coli aspartate amino-transferase with increased enzymic activity
-
Jager, J., Pauptit, R. A., Sauder, U., and Jansonius, J. N. (1994) Three-dimensional structure of a mutant E. coli aspartate amino-transferase with increased enzymic activity, Protein Eng. 7, 605-612.
-
(1994)
Protein Eng.
, vol.7
, pp. 605-612
-
-
Jager, J.1
Pauptit, R.A.2
Sauder, U.3
Jansonius, J.N.4
-
28
-
-
0030871363
-
Enzyme flexibility: A new concept in recognition of hydrophobic substrates
-
Kawaguchi, S., Nobe, Y., Yasuoka, J., Wakamiya, T., Kusumoto, S., and Kuramitsu, S. (1997) Enzyme flexibility: A new concept in recognition of hydrophobic substrates, J. Biochem. 122, 55-63.
-
(1997)
J. Biochem.
, vol.122
, pp. 55-63
-
-
Kawaguchi, S.1
Nobe, Y.2
Yasuoka, J.3
Wakamiya, T.4
Kusumoto, S.5
Kuramitsu, S.6
-
29
-
-
0033604853
-
The active site of Paracoccus denitrificans aromatic amino acid aminotransferase has contrary properties: Flexibility and rigidity
-
Okamoto, A., Ishii, S., Hirotsu, K., and Kagamiyama, H. (1999) The active site of Paracoccus denitrificans aromatic amino acid aminotransferase has contrary properties: flexibility and rigidity, Biochemistry 38, 1176-1184.
-
(1999)
Biochemistry
, vol.38
, pp. 1176-1184
-
-
Okamoto, A.1
Ishii, S.2
Hirotsu, K.3
Kagamiyama, H.4
-
30
-
-
4944245139
-
-
Ph.D. Thesis, University of California, Berkeley, CA
-
Rothman, S. C. (2003) Ph.D. Thesis, University of California, Berkeley, CA.
-
(2003)
-
-
Rothman, S.C.1
|