Cryo-electron tomography of cells: Connecting structure and function

Histochemistry and Cell Biology

Volumn 130, Issue 2, 2008, Pages 185-196

  Lučić, Vladan ^a   Leis, Andrew ^a   Baumeister, Wolfgang ^a  

^a MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

Correlative light microscopy; Cryo electron tomography; Electron microscopy

Indexed keywords

ANTIBODY LABELING; CELL FUNCTION; CELL STRUCTURE; CELL ULTRASTRUCTURE; CRYOELECTRON MICROSCOPY; CYTOSKELETON; ELECTRON MICROSCOPY; FLUORESCENCE; IMMUNOHISTOCHEMISTRY; MICROSCOPY; NONHUMAN; PRIORITY JOURNAL; REVIEW; TOMOGRAPHY; WHOLE CELL;

ANIMALS; CELLS; CRYOELECTRON MICROSCOPY; ELECTRON MICROSCOPE TOMOGRAPHY;

EID: 48749089692     PISSN: 09486143     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00418-008-0459-y     Document Type: Review

References (56)

1. SE Ahmari J Buchanan SJ Smith 2000 Assembly of presynaptic active zones from cytoplasmic transport packets Nat Neurosci 3 445 451
2. A Al-Amoudi JJ Chang A Leforestier A McDowall LM Salamin LP Norlen K Richter NS Blanc D Studer J Dubochet 2004 Cryo-electron microscopy of vitreous sections EMBO J 23 3583 3588
3. W Baumeister 2002 Electron tomography: towards visualizing the molecular organization of the cytoplasm Curr Opin Struct Biol 12 679 684
4. M Beck V Lucic F Forster W Baumeister O Medalia 2007 Snapshots of nuclear pore complexes in action captured by cryo-electron tomography Nature 449 611 615
5. J Berriman N Unwin 1994 Analysis of transient structures by cryo-microscopy combined with rapid mixing of spray droplets Ultramicroscopy 56 241 252
6. E Betzig GH Patterson R Sougrat OW Lindwasser S Olenych JS Bonifacino MW Davidson J Lippincott-Schwartz HF Hess 2006 Imaging intracellular fluorescent proteins at nanometer resolution Science 313 1642 1645
7. SS Biel K Kawaschinski KP Wittern U Hintze R Wepf 2003 From tissue to cellular ultrastructure: closing the gap between micro- and nanostructural imaging J Microsc 212 91 99
8. F Braet E Wisse P Bomans P Frederik W Geerts A Koster L Soon S Ringer 2007 Contribution of high-resolution correlative imaging techniques in the study of the liver sieve in three-dimensions Microsc Res Tech 70 230 242
9. A Briegel DP Dias Z Li RB Jensen AS Frangakis GJ Jensen 2006 Multiple large filament bundles observed in Caulobacter crescentus by electron cryotomography Mol Microbiol 62 5 14
10. A Briegel HJ Ding Z Li J Werner Z Gitai RB Jensen G Jensen 2008 Location and architecture of the Caulobacter crescentus chemoreceptor array Mol Microbiol 69 30 41
11. M Dahan S Levi C Luccardini P Rostaing B Riveau A Triller 2003 Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking Science 302 442 445
12. LF van Driel K Knoops AJ Koster JA Valentijn 2008 Fluorescent labeling of resin-embedded sections for correlative electron microscopy using tomography-based contrast enhancement J Struct Biol 161 372 383
13. J Dubochet M Adrian JJ Chang JC Homo J Lepault AW McDowall P Schultz 1988 Cryo-electron microscopy of vitrified specimens Q Rev Biophys 21 129 228
14. PM Frederik N Sommerdijk 2005 Spatial and temporal resolution in cryo-electron microscopy-a scope for nano-chemistry Curr Op Coll Interface Sci 10 245 249
15. G Gaietta TJ Deerinck SR Adams J Bouwer O Tour DW Laird GE Sosinsky RY Tsien MH Ellisman 2002 Multicolor and electron microscopic imaging of connexin trafficking Science 296 503 507
16. BK Garvalov B Zuber C Bouchet-Marquis M Kudryashev M Gruska M Beck A Leis F Frischknecht F Bradke W Baumeister J Dubochet M Cyrklaff 2006 Luminal particles within cellular microtubules J Cell Biol 174 759 765
17. BN Giepmans TJ Deerinck BL Smarr YZ Jones MH Ellisman 2005 Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots Nat Methods 2 743 749
18. M Grabenbauer WJ Geerts J Fernadez-Rodriguez A Hoenger AJ Koster T Nilsson 2005 Correlative microscopy and electron tomography of GFP through photooxidation Nat Methods 2 857 862
19. Griffiths G (1993) Fine structure immunocytochemistry link. Springer, Berlin
20. M Gruska O Medalia W Baumeister A Leis 2008 Electron tomography of vitreous sections from cultured mammalian cells J Struct Biol 161 384 392
21. MG Gustafsson 2005 Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution Proc Natl Acad Sci USA 102 13081 13086
22. SW Hell 2003 Toward fluorescence nanoscopy Nat Biotechnol 21 1347 1355
23. GP Henderson L Gan GJ Jensen 2007 3-D ultrastructure of O. tauri: electron cryotomography of an entire eukaryotic cell PLoS ONE 2 e749
24. AW Henkel J Lubke WJ Betz 1996 FM1-43 dye ultrastructural localization in and release from frog motor nerve terminals Proc Natl Acad Sci USA 93 1918 1923
25. BM Humbel MD de Jong WH Muller AJ Verkleij 1998 Pre-embedding immunolabeling for electron microscopy: an evaluation of permeabilization methods and markers Microsc Res Tech 42 43 58
26. A Komeili Z Li DK Newman GJ Jensen 2006 Magnetosomes are cell membrane invaginations organized by the actin-like protein MamK Science 311 242 245
27. Koster AJ, Klumperman J (2003) Electron microscopy in cell biology: integrating structure and function. Nat Rev Mol Cell Biol (Suppl:S)S6-S10
28. J Kurner AS Frangakis W Baumeister 2005 Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum Science 307 436 438
29. J Liu MJ McBride S Subramaniam 2007 Cell surface filaments of the gliding bacterium Flavobacterium johnsoniae revealed by cryo-electron tomography J Bacteriol 189 7503 7506
30. V Lucic F Forster W Baumeister 2005 structural studies by electron tomography: from cells to molecules Annu Rev Biochem 74 833 865
31. V Lucic A Kossel T Yang T Bonhoeffer W Baumeister A Sartori 2007 Multiscale imaging of neurons grown in culture: from light microscopy to cryo-electron tomography J Struct Biol 160 146 156
32. EM Mandelkow E Mandelkow RA Milligan 1991 Microtubule dynamics and microtubule caps: a time-resolved cryo-electron microscopy study J Cell Biol 114 977 991
33. AR Maranto 1982 Neuronal mapping: a photooxidation reaction makes Lucifer yellow useful for electron microscopy Science 217 953 955
34. DN Mastronarde 2005 Automated electron microscope tomography using robust prediction of specimen movements J Struct Biol 152 36 51
35. O Medalia M Beck M Ecke I Weber R Neujahr W Baumeister G Gerisch 2007 Organization of actin networks in intact filopodia Curr Biol 17 79 84
36. CP Mercogliano DJ DeRosier 2007 Concatenated metallothionein as a clonable gold label for electron microscopy J Struct Biol 160 70 82
37. AA Mironov GV Beznoussenko P Nicoziani O Martella A Trucco HS Kweon D Di Giandomenico RS Polishchuk A Fusella P Lupetti EG Berger WJ Geerts AJ Koster KN Burger A Luini 2001 Small cargo proteins and large aggregates can traverse the golgi by a common mechanism without leaving the lumen of cisternae J Cell Biol 155 1225 1238
38. AA Mironov AA Mironov Jr GV Beznoussenko A Trucco P Lupetti JD Smith WJ Geerts AJ Koster KN Burger ME Martone TJ Deerinck MH Ellisman A Luini 2003 ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains Dev Cell 5 583 594
39. Moor H (1987) Theory and practice of high pressure freezing. In: Steinbrecht RA, Zierold K (eds) Cryotechniques in biological electron microscopy. Springer, Berlin, pp 175-191
40. T Muller-Reichert M Srayko A Hyman ET O'Toole K McDonald 2007 Correlative light and electron microscopy of early Caenorhabditis elegans embryos in mitosis Methods Cell Biol 79 101 119
41. T Nakata S Terada N Hirokawa 1998 Visualization of the dynamics of synaptic vesicle and plasma membrane proteins in living axons J Cell Biol 140 659 674
42. D Nicastro JR McIntosh W Baumeister 2005 3D structure of eukaryotic flagella in a quiescent state revealed by cryo-electron tomography Proc Natl Acad Sci USA 102 15889 15894
43. R Nisman G Dellaire Y Ren R Li DP Bazett-Jones 2004 Application of quantum dots as probes for correlative fluorescence, conventional, and energy-filtered transmission electron microscopy J Histochem Cytochem 52 13 18
44. JO Ortiz F Forster J Kurner AA Linaroudis W Baumeister 2006 Mapping 70S ribosomes in intact cells by cryoelectron tomography and pattern recognition J Struct Biol 156 334 341
45. S Pfeiffer M Beese M Boettcher K Kawaschinski K Krupinska 2003 Combined use of confocal laser scanning microscopy and transmission electron microscopy for visualisation of identical cells processed by cryotechniques Protoplasma 222 129 137
46. RS Polishchuk EV Polishchuk P Marra S Alberti R Buccione A Luini AA Mironov 2000 Correlative light-electron microscopy reveals the tubular-saccular ultrastructure of carriers operating between Golgi apparatus and plasma membrane J Cell Biol 148 45 58
47. MJ Rust M Bates X Zhuang 2006 Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) Nat Methods 3 793 795
48. Sartori A, Gatz R, Beck F, Kossel A, Leis A, BaumeisterW, Plitzko JM (2005) Correlationmicroscopy: Bridging the gap between light- and cryo-electronmicroscopy. Microsc and Microanal 11(Suppl 2):16-17
49. A Sartori R Gatz F Beck A Rigort Plitzko J BaumeisterW 2007 Correlative microscopy: bridging the gap between light- and cryo-electron microscopy J Struct Biol 160 135 145
50. A Scheffel M Gruska D Faivre A Linaroudis JM Plitzko D Schuler 2006 An acidic protein aligns magnetosomes along a filamentous structure in magnetotactic bacteria Nature 440 110 114
51. G Schneider 1998 Cryo X-ray microscopy with high spatial resolution in amplitude and phase contrast Ultramicroscopy 75 85 104
52. CL Schwartz VI Sarbash FI Ataullakhanov JR McIntosh D Nicastro 2007 Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching J Microsc 227 98 109
53. S Subramaniam M Gerstein D Oesterhelt R Henderson 1993 Electron diffraction analysis of structural changes in the photocycle of bacteriorhodopsin EMBO J 12 1 8
54. C Tardin L Cognet C Bats B Lounis D Choquet 2003 Direct imaging of lateral movements of ampa receptors inside synapses EMBO J 22 4656 4665
55. P Zhang E Bos J Heymann H Gnaegi M Kessel PJ Peters S Subramaniam 2004 Direct visualization of receptor arrays in frozen-hydrated sections and plunge-frozen specimens of E. coli engineered to overproduce the chemotaxis receptor Tsr J Microsc 216 76 83
56. P Zhang CM Khursigara LM Hartnell S Subramaniam 2007 Direct visualization of Escherichia coli chemotaxis receptor arrays using cryo-electron microscopy Proc Natl Acad Sci USA 104 3777 81