Transcriptional analysis of Mycobacterium fortuitum cultures upon hydrogen peroxide treatment using the novel standard rrnA-P1

BMC Microbiology

Volumn 8, Issue , 2008, Pages

  Nú̃ez, María Carmen ^a,b   Menéndez, María Carmen ^a   Rebollo, María José ^a,c   García, María J ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^b INIA   (Spain)

^c GLAXOSMITHKLINE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGEN PEROXIDE;

ARTICLE; BACTERIAL GENE; BACTERIAL VIABILITY; BACTERIUM CULTURE; CONTROLLED STUDY; DRUG EFFECT; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC TRANSCRIPTION; METHODOLOGY; MYCOBACTERIUM FORTUITUM; NONHUMAN; NORTHERN BLOTTING; OXIDATIVE STRESS; PROMOTER REGION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

MYCOBACTERIUM FORTUITUM; MYCOBACTERIUM SMEGMATIS; MYCOBACTERIUM TUBERCULOSIS;

EID: 46649101630     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-8-100     Document Type: Article

References (62)

1. The Clinical Management and Outcome of Nail Salon-Acquired Mycobacterium fortuitum Skin Infection. KL Winthrop K Albridge D South P Albrecht M Abrams MC Samuel W Leonard J Wagner DJ Vugia, Clin Infect Dis 2004 38 1 38 44 14679446
2. Mycobacterium fortuitum skin infection occurring after a facelift. K Angeli JP Lacour F Mantoux JC Roujeau P Andre C Truffot-Pernot JP Ortonne, Ann Dermatol Venereol 2004 131 198 200 15026750
3. Interferon-gamma-activated human granulocytes kill ingested Mycobacterium fortuitum more efficiently than normal granulocytes. MF Geertsma PH Nibbering O Pos R Van Furth, Eur J Immunol 1990 20 869 873 2161344
4. Interleukin-8 enhances nonoxidative intracellular killing of Mycobacterium fortuitum by human granulocytes. PH Nibbering O Pos A Stevenhagen R Van Furth, Infect Immun 1993 61 3111 3116 8335340
5. Positive control of a regulon for defenses against oxidative stress and some heat-shock proteins in Salmonella typhimurium. MF Christman RW Morgan FS Jacobson BN Ames, Cell 1985 41 753 762 2988786
6. Inducible repair of oxidative DNA damage in Escherichia coli. B Demple J Halbrook, Nature 1983 304 466 468 6348554
7. Stimulation or inhibition of the respiratory burst in cultured macrophages in a mycobacterium model: initial stimulation is followed by inhibition after phagocytosis. AH Gordon PD Hart, Infect Immun 1994 62 10 4650 4651 7927734
8. Response of Mycobacterium tuberculosis to reactive oxygen and nitrogen intermediates. TR Garbe NS Hibler V Deretic, Mol Med 1996 2 134 142 8900541
9. 2killing in human monocytes in vitro. P Laochumroonvorapong S Paul C Manca VH Freedman G Kaplan, Infect Immun 1997 65 11 4850 4857 9353075
10. Genetic analysis of superoxide dismutase, the 23 kilodalton antigen of Mycobacterium tuberculosis. Y Zhang R Lathigra T Garbe D Catty D Young, Mol Microbiol 1991 5 381 391 1904126
11. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. ST Cole R Brosch J Parkhill T Garnier C Churcher D Harris SV Gordon K Eiglmeier S Gas CE Barry F Tekaia K Badcock D Basham D Brown T Chillingworth R Connor R Davies K Devlin T Feltwell S Gentles N Hamlin S Holroyd T Hornsby K Jagels A Krogh J McLean S Moule L Murphy K Oliver J Osborne MA Quail M-A Rajandream J Rogers S Rutter K Seeger J Skelton R Squares S Squares JE Sulston K Taylor S Whitehead BG Barrell, Nature 1998 393 537 544 9634230
12. Role of Mycobacterium tuberculosis copper-zinc superoxide dismutase. O Dussurget G Stewart O Neyrolles P Pescher D Young G Marchal, Infect Immun 2001 69 529 533 11119546
13. Cu, Zn Superoxide Dismutase of Mycobacterium tuberculosis contributes to survival in activated macrophages that are generating an oxidative burst. DL Piddington FC Fang T Laessig AM Cooper IM Orme NA Buchmeier, Infect Immun 2001 69 8 4980 4987 11447176
14. Export of recombinant Mycobacterium tuberculosis superoxide dismutase is dependent upon both information in the protein and mycobacterial export machinery. G Harth MA Horwitz, J Biol Chem 1999 274 4281 4292 9933629
15. Iron-cofactored superoxide dismutase inhibits host responses to Mycobacterium tuberculosis. KM Edwards MH Cynamon RK Voladri CC Hager MS DeStefano KT Tham DL Lakey MR Bochan DS Kernodle, Am J Respir Crit Care Med 2001 164 2213 2219 11751190
16. Gene expression profiling on human macrophages at late time of infection with Mycobacterium tuberculosis. E Volpe G Cappelli M Grassi A Martino A Serafino V Colizzi N Sanarico F Mariani, Immunology 2006 118 4 449 460 16895554
17. Cloning and expression of the Mycobacterium fortuitum superoxide dismutase gene. MC Menendez P Domenech J Prieto MJ Garcia, FEMS Microbiol Lett 1995 134 273 278 8586279
18. Role of oxidants in microbial pathophysiology. RA Miller BE Britigan, Clin Microbiol Rev 1997 10 1 18 8993856
19. Serological, taxonomic and kinetic studies of the T and M classes of mycobacterial catalase. LG Wayne GA Diaz, Intern J System Bacteriol 1982 32 296 304
20. Life without katG. Y Zhang, Trends Microbiol 1996 4 415 416 8950806
21. The genetics and biochemistry of isoniazid resistance in Mycobacterium tuberculosis. RA Slayden CE Barry 3rd, Microbes Infect 2000 2 659 669 10884617
22. Expression of katG in Mycobacterium tuberculosis is associated with its growth and persistence in mice and guinea pigs. Z Li C Kelley F Collins D Rouse S Morris, J Infect Dis 1998 177 4 1030 1035 9534978
23. The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis. Y Zhang B Heym B Allen D Young S Cole, Nature 1992 358 591 593 1501713
24. Transformation with katG restores isoniazid-sensitivity in Mycobacterium tuberculosis isolates resistant to a range of drug concentrations. Y Zhang T Garbe D Young, Mol Microbiol 1993 8 521 524 8392139
25. Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence. I Smith, Clin Microbiol Rev 2003 16 3 463 496 12857778
26. protective role of the Mycobacterium smegmatis IdeR against reactive oxygen species and isoniazid toxicity. O Dussurget M Rodriguez I Smith, Tuber Lung Dis 1998 79 2 99 106 10645447
27. OxyR and SoxRS regulation of fur. M Zheng B Doan TD Schnerider G Storz, J Bacteriol 1999 181 4639 4643 10419964
28. Oxidative stress response and characterization of the oxyR-ahpC and furA-katG loci in Mycobacterium marinum. E Pagan-Ramos J Song M McFalone MH Mudd V Deretic, J Bacteriol 1998 180 4856 4864 9733688
29. Mycobacterial FurA is a negative regulator of catalase-peroxidase gene katG. TC Zahrt J Song J Siple V Deretic, Mol Microbiol 2001 39 1174 1185 11251835
30. Mapping of Mycobacterium tuberculosis katG promoters and their differential expression in infected macrophages. S Master TC Zahrt J Song V Deretic, J Bacteriol 2001 183 4033 4039 11395468
31. Regulation of catalase-peroxidase (KatG) expression, isoniazid sensitivity and virulence by furA of Mycobacterium tuberculosis. AS Pym P Domenech N Honore J Song V Deretic ST Cole, Mol Microbiol 2001 40 879 889 11401695
32. Transcriptional regulation of furA and katG upon oxidative stress in Mycobacterium smegmatis. A Milano F Forti C Sala G Riccardi D Ghisotti, J Bacteriol 2001 183 6801 6806 11698368
33. Mycobacterium tuberculosis FurA autoregulates its own expression. C Sala F Forti E Di Florio F Canneva A Milano G Riccardi D Ghisotti, J Bacteriol 2003 185 5357 5362 12949087
34. katGI and katGII encode two different catalases-peroxidases in Mycobacterium fortuitum. MC Menendez JA Ainsa C Martin MJ García, J Bacteriol 1997 179 6880 6886 9371430
35. A novel method for real time quantitative RT-PCR. UE Gibson CA Heid PM Williams, Genome Res 1996 6 995 1001 8908519
36. Real time quantitative PCR. CA Heid J Stevens KJ Livak PM Williams, Genome Res 1996 6 10 986 994 8908518
37. Quantitation of dihydropyrimidine dehydrogenase expression by real-time reverse transcription polymerase chain reaction. MR Johnson K Wang JB Smith MJ Heslin RB Diasio, Anal Biochem 2000 278 175 184 10660460
38. T) Method. KJ Livak TD Schmittgen, Methods 2001 25 402 408 11846609
39. Mycobacterium tuberculosis genes induced during infection of human macrophages. E Dubnau P Fontan R Manganelli S Soares-Appel I Smith, Infect Immun 2002 70 2787 2795 12010964
40. The functions of OmpATb, a pore-forming protein of Mycobacterium tuberculosis. C Raynaud KG Papavinasasundaram RA Speight B Springer P Sander EC Bottger MJ Colston P Draper, Mol Microbiol 2002 46 191 201 12366842
41. Differential expression of iron-, carbon-, and oxygen-responsive mycobacterial genes in the lungs of chronically infected mice and tuberculosis patients. J Timm FA Post LG Bekker GB Walther HC Wainwright R Manganelli WT Chan L Tsenova B Gold I Smith G Kaplan McKinney, Proc Natl Acad Sci USA 2003 100 14321 14326 14623960
42. Usefulness of acr expression for monitoring latent Mycobacterium tuberculosis bacilli in in vitro and in vivo experimental models. S Gordillo E Guirado O Gil J Diaz I Amat S Molinos C Vilaplana V Ausina P-J Cardona, Scand J Immunol 2006 64 30 39 16784488
43. Responses of Mycobacterium tuberculosis to growth in mouse lung. E Dubnau J Chan VP Mohan I Smith, Infect Immun 2007 73 6 3754 3757 15908407
44. Differential expression of 10 sigma factor genes in Mycobacterium tuberculosis. R Manganelli J Dubnau S Tyagi FR Kramer I Smith, Mol Microbiol 1999 31 715 724 10027986
45. Analysis of the precursor-rRNA fractions of rapidly growing mycobacteria: quantification by methods that include the use of a constitutive promoter (rrnA P1) as a novel standard. MC Menendez MJ Rebollo MC Nũez RA Cox MJ Garcia, J Bacteriol 2005 187 534 543 15629925
46. Determinants of Mycobacterial gene expression. M Gomez I Smith, Molecular genetics of Mycobacteria ASM Press, Washington. DC, Hatfull GF, Jacobs WR Jr, 2000 111 129
47. Control of the mycobacterial transcription. I Smith WR Bishai V Nagaraja, Tuberculosis and the tubercle bacillus ASM Press, Washington DC, Cole ST et al, 2005 219 234
48. Strategies used by pathogenic and nonpathogenic mycobacteria to synthesize rRNA. JA Gonzalez-y-Merchand MJ Garcia S Gonzalez-Rico MJ Colston RA Cox, J Bacteriol 1997 179 6949 6958 9371439
49. Roles of multiple promoters in transcription of ribosomal DNA: effects of growth conditions on precursor rRNA synthesis in micobacteria. JA Gonzalez-y-Merchand MJ Colston RA Cox, J Bacteriol 1998 180 5756 5761 9791129
50. Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. TD Schmittgen BA Zakrajsek, J Biochem Biophys Methods 2000 46 69 81 11086195
51. The katG mRNA of Mycobacterium tuberculosis and Mycobacterium smegmatis is processed at its 5' end and is stabilized by both a polypurine sequence and translation initiation. C Sala F Forti F Magnoni D Ghisoti, BMC Mol Biol 2008 9 33 18394163
52. Genomes OnLine Database. http://www.genomesonline.org
53. Disparate responses to oxidative stress in saprophytic and pathogenic mycobacteria. DR Sherman PJ Sabo MJ Hickey TM Arain GG Mahairas Y Yuan CE Barry III CK Stover, Proc Natl Acad Sci USA 1995 92 6625 6629 7604044
54. Identification of iron-regulated proteins of Mycobacterium tuberculosis and cloning of tandem genes encoding a low iron-induced protein and a metal transporting ATPase with similarities to two-component metal transport systems. KM Calder MA Horwitz, Microb Pathog 1998 24 133 143 9514635
55. J Sambrook DW Russell, Molecular cloning: A laboratory manual 3rd Cold Spring Harbor YN, Cold Spring Harbor Laboratory Press 2001
56. A double staining method for differentiating between two classes of mycobacterial catalase in polyacrylamide electrophoresis gels. LG Wayne GA Diaz, Anal Biochem 1986 157 89 92 2429588
57. Superoxide dismutase: improved assays and an assay applicable to acrylamide gels. C Beauchamp I Fridovich, Anal Biochem 1971 44 276 287 4943714
58. Assaying for Superoxide dismutase activity: some large consequences of minor changes in conditions. LG Wayne I Fridovich, Anal Biochem 1987 161 559 566 3034103
59. The rRNA operons of Mycobacterium smegmatis and Mycobacterium tuberculosis: comparison of promoter elements and of neighbouring upstream genes. JA Gonzalez-y-Merchand MJ Colston RA Cox, Microbiology 1996 142 Pt 3 667 674 8868442
60. Transcription start-site mapping. F Movahedzadeh JA Gonzalez-y-Merchand RA Cox, Mycobacterium tuberculosis protocols Humana Press. Totowa, NJ, Parish T, Stoker NG, 2001 105 124
61. High throughput RNase protection assay. VN Mironov M Van Montagu D Inzé Nucleic Acids Res 1995 23 3359 3360 7545289
62. Development and validation of real-time quantitative reverse transcriptase-polymerase chain reaction for monitoring gene expression in cardiac myocytes in vitro. J Winer CK Jung I Shackel PM Williams, Anal Biochem 1999 270 41 49 10328763