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Volumn 2008, Issue 4, 2008, Pages 181-191

Maximum gene-support tree

Author keywords

Gene evolution; Genome; Molecular phylogeny; True tree

Indexed keywords

FUNGAL DNA; PLANT DNA; VIRUS DNA;

EID: 44849109358     PISSN: None     EISSN: 11769343     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (33)
  • 1
    • 0036301764 scopus 로고    scopus 로고
    • Gene conversion and the evolution of euryarchaeal chaperonins: A maximum likelihood-based method for detecting conflicting phylogenetic signals
    • Archibald, J.M. and Roger, A.J. 2002. Gene conversion and the evolution of euryarchaeal chaperonins: A maximum likelihood-based method for detecting conflicting phylogenetic signals. J. Mol. Evol., 55:232-45.
    • (2002) J. Mol. Evol , vol.55 , pp. 232-245
    • Archibald, J.M.1    Roger, A.J.2
  • 2
    • 0029958177 scopus 로고    scopus 로고
    • Molecular clock or erratic evolution? A tale of two genes
    • Ayala, F.J., Barrio, E. and Kwiatowski, J. 1996. Molecular clock or erratic evolution? A tale of two genes. Proc. Natl. Acad. Sci. U.S.A., 93:11729-34.
    • (1996) Proc. Natl. Acad. Sci. U.S.A , vol.93 , pp. 11729-11734
    • Ayala, F.J.1    Barrio, E.2    Kwiatowski, J.3
  • 3
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S.L., Roger, A.J., Wenk-Siefert, I. and Doolittle, W.F. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science, 290:972-7.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 4
    • 0003656919 scopus 로고
    • The Benjamin/Cummings Publishing Company Inc, Redwood City, California
    • Campbell, N.A. 1993. Biology. The Benjamin/Cummings Publishing Company Inc., Redwood City, California.
    • (1993) Biology
    • Campbell, N.A.1
  • 6
    • 12044251056 scopus 로고
    • For consensus (sometimes)
    • De Queiroz, A. 1993. For consensus (sometimes). System. Biol., 42:368-72.
    • (1993) System. Biol , vol.42 , pp. 368-372
    • De Queiroz, A.1
  • 7
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle, W.F. 1999. Phylogenetic classification and the universal tree. Science, 284:2124-8.
    • (1999) Science , vol.284 , pp. 2124-2128
    • Doolittle, W.F.1
  • 8
    • 0000989175 scopus 로고
    • Gene trees and species trees molecular systematics as one-character taxonomy
    • Doyle, J.J. 1992. Gene trees and species trees molecular systematics as one-character taxonomy. System. Bot., 17:144-63.
    • (1992) System. Bot , vol.17 , pp. 144-163
    • Doyle, J.J.1
  • 9
    • 44849093325 scopus 로고    scopus 로고
    • Felsenstein, J. 1989. PHYLIP, Phylogeny Inference Package Version 3.2, Cladistics, 5:164-6
    • Felsenstein, J. 1989. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics, 5:164-6.
  • 10
    • 0033231209 scopus 로고    scopus 로고
    • Whole genome-based phylogenetic analysis of free-living microorganisms
    • Fitz-Gibbon, S.T. and House, C.H. 1999. Whole genome-based phylogenetic analysis of free-living microorganisms. Nucl. Acids Res., 27:4218-22.
    • (1999) Nucl. Acids Res , vol.27 , pp. 4218-4222
    • Fitz-Gibbon, S.T.1    House, C.H.2
  • 11
    • 14844313275 scopus 로고    scopus 로고
    • Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree
    • Gadagkar, S.R., Rosenberg, M.S. and Kumar, S. 2005. Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree. J Exp. Zool. Part B: Mol. Dev. Evol., 304:64-74.
    • (2005) J Exp. Zool. Part B: Mol. Dev. Evol , vol.304 , pp. 64-74
    • Gadagkar, S.R.1    Rosenberg, M.S.2    Kumar, S.3
  • 14
    • 84959806898 scopus 로고
    • A concern for evidence, and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
    • Kluge, A.G. 1989. A concern for evidence, and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes) System. Zool., 38:7-25.
    • (1989) System. Zool , vol.38 , pp. 7-25
    • Kluge, A.G.1
  • 16
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock, B. 1984. The significance of responses of the genome to challenge. Science, 226:792-801.
    • (1984) Science , vol.226 , pp. 792-801
    • McClintock, B.1
  • 17
    • 11944269526 scopus 로고
    • Testing species phylogenies and phylogenetic methods with congruence
    • Miyamoto, M.M. and Fitch, W.M. 1995. Testing species phylogenies and phylogenetic methods with congruence. System. Biol., 44:64-76.
    • (1995) System. Biol , vol.44 , pp. 64-76
    • Miyamoto, M.M.1    Fitch, W.M.2
  • 20
    • 3042550872 scopus 로고    scopus 로고
    • Genome-scale phylogeny and the detection of systematic biases
    • Phillips, M.J., Delsuc, F. and Penny, D. 2004. Genome-scale phylogeny and the detection of systematic biases. Mol. Biol. Evol., 21:1455-8.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 1455-1458
    • Phillips, M.J.1    Delsuc, F.2    Penny, D.3
  • 21
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas, A., Williams, B.I., King, N. and Carroll, S.B. 2003. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature, 425:798-804.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.I.2    King, N.3    Carroll, S.B.4
  • 22
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson, D.R. and Foulds, L.R. 1981. Comparison of phylogenetic trees. Math. Biosci., 53:131-47.
    • (1981) Math. Biosci , vol.53 , pp. 131-147
    • Robinson, D.R.1    Foulds, L.R.2
  • 23
    • 0030045281 scopus 로고    scopus 로고
    • Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny
    • Russo, C.A.M., Takezaki, N. and Nei, M. 1996. Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. Mol. Biol. Evol., 13:525-36.
    • (1996) Mol. Biol. Evol , vol.13 , pp. 525-536
    • Russo, C.A.M.1    Takezaki, N.2    Nei, M.3
  • 24
    • 0032030505 scopus 로고    scopus 로고
    • Phylogenetic supertrees: Assembling the trees of life
    • Sanderson, M.J., Purvis, A. and Henze, C. 1998. Phylogenetic supertrees: Assembling the trees of life. Trends Ecol. Evol., 13:105-9.
    • (1998) Trends Ecol. Evol , vol.13 , pp. 105-109
    • Sanderson, M.J.1    Purvis, A.2    Henze, C.3
  • 25
    • 0001541744 scopus 로고    scopus 로고
    • A supertree method for rooted trees
    • Semple, C. and Steel, M. 2000. A supertree method for rooted trees. Discr. Appl. Math., 105:147-58.
    • (2000) Discr. Appl. Math , vol.105 , pp. 147-158
    • Semple, C.1    Steel, M.2
  • 26
    • 33244466796 scopus 로고    scopus 로고
    • Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes
    • Simpson, A.G.B., Inagaki, Y. and Roger, A.J. 2006. Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes. Mol. Biol. Evol., 23:615-25.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 615-625
    • Simpson, A.G.B.1    Inagaki, Y.2    Roger, A.J.3
  • 28
    • 44849093638 scopus 로고    scopus 로고
    • Swofford, D.L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony *and other methods, Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts
    • Swofford, D.L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
  • 29
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeamnougin, F. and Higgins, D.G. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res., 25:4876-82.
    • (1997) Nucl. Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeamnougin, F.4    Higgins, D.G.5
  • 30
    • 0033594973 scopus 로고    scopus 로고
    • Mutation, recombination, and incipient speciation of bacteria in the laboratory
    • Vuli, M., Lenski, R.E. and Radman, M. 1999. Mutation, recombination, and incipient speciation of bacteria in the laboratory. Evolution, 96:7348-51.
    • (1999) Evolution , vol.96 , pp. 7348-7351
    • Vuli, M.1    Lenski, R.E.2    Radman, M.3
  • 33
    • 0029970097 scopus 로고    scopus 로고
    • Maximum - likelihood models for combined analyses of multiple sequence data
    • Yang, Z. 1996. Maximum - likelihood models for combined analyses of multiple sequence data. J. Mol. Evol., 42:587-96.
    • (1996) J. Mol. Evol , vol.42 , pp. 587-596
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.