Use of whole genome sequence data to infer baculovirus phylogeny

Journal of Virology

Volumn 75, Issue 17, 2001, Pages 8117-8126

  Herniou, E A ^a   Luque, T ^a   Chen, X ^a   Vlak, J M ^a   Winstanley, D ^a   Cory, J S ^a   O'Reilly, D R ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACULOVIRUS; EVOLUTION; GENE SEQUENCE; GRANULOVIRUS; NONHUMAN; PHYLOGENY; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; VIRUS GENOME;

ANIMALS; BACULOVIRIDAE; BOMBYX; GENE ORDER; GENES, VIRAL; GENOME, VIRAL; PHYLOGENY; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 0034864707     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.75.17.8117-8126.2001     Document Type: Article

References (59)

1. The sequence of the Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus genome
2. The complete DNA sequence of Autographa californica nuclear polyhedrosis virus
3. Molecular characterization and phylogenetic analysis of the Harrisina brillians granulovirus granulin gene
4. Gene order breakpoint evidence in animal mitochondrial phylogeny
5. Seventh report of the international committee on taxonomy of viruses
6. Group II nucleopolyhedrovirus subgroups revealed by phylogenetic analysis of polyhedrin and DNA polymerase gene sequences
7. Identification, sequence analysis and phylogeny of the lef-2 gene of Helicoverpa armigera single-nucleocapsid baculovirus
8. The sequence of the Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus genome
9. Analysis of the ecdysteroid UDP-glucotransferase gene of Heliothis armigera single nucleocapsid baculovirus
10. Characterization of the ecdysteroid UDP-glucosyltransferase gene from Mamestra brassicae nucleopolyhedrosis virus
11. Control of programmed cell death by the baculovirus genes p35 and iap
12. Recombination as a possible major cause of genetic heterogeneity in Anticarsia gemmatalis nuclear polyhedrosis virus populations
13. Phylogenetic classification and the universal tree
14. Identification and characterization of a protein kinase-interacting protein encoded by the Autographa californica nuclear polyhedrosis virus
15. Cases in which parsimony or compatibility methods will be positively misleading
16. Whole genome-based phylogenetic analysis of free living microorganisms
17. Assay for movement of lepidopteran transposon IFP2 in insect cells using a baculovirus genome as a target DNA
18. Baculovirus structure
19. Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus
20. Genome organization of Xestia c-nigrum granulovirus
21. Genome sequence comparison and scenarios for gene rearrangements - A testcase
22. Sequence analysis of the Plutella xylostella granulovirus genome
23. Identification and preliminary characterization of a chitinase gene in the Autographa californica nuclear polyhedrosis virus genome
24. Sequence analysis of the Xestia c-nigrum granulovirus genome
25. Patterns of genome organization and content in lepidopteran baculoviruses
26. Phylogenetic evidence for recombination in dengue virus
27. Distinct gene arrangement in the Buzura suppressaria single-nucleocapsid nucleopolyhedrovirus genome
28. Categorizing some early and late transcripts directed by the Autographa californica nuclear polyhedrosis virus
29. Sequence and organization of the Spodoptera exigua multicapsid nucleopolyhedrovirus genome
30. Identification and characterization of the Cydia pomonella granulovirus cathepsin and chitinase genes
31. Evaluation of maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
32. Host range expansion by recombination of the baculoviruses Bombyx mori nuclear polyhedrosis virus and Autographa californica nuclear polyhedrosis virus
33. The impact of comparative genomics on our understanding of evolution
34. Sequence and analysis of the genome of a baculovirus pathogenic for Lymantria dispar
35. Phylogenies inferred from mitochondrial gene orders - A cautionary tale from the parasitic flatworms
36. Poised for contagion: Evolutionary origins of the infectious abilities of invertebrate retroviruses
37. More taxa or more characters revisited: Combining data from nuclear protein-encoding genes for phylogenetic analyses of Noctuoidea (Insecta: Lepidoptera)
38. Gene content phylogeny of herpesviruses
39. Mosaic structure of the human immunodeficiency virus type 1 genome infecting lymphoid cells and the brain: Evidence for frequent in vivo recombination events in the evolution of regional populations
40. The glycoprotein of Thogoto virus (a tick-borne orthomyxo-like virus) is related to the baculovirus glycoprotein gp64
41. Tree View: An application to display phylogenetic trees on personal computers
42. Identification of the Lymantria dispar nucleopolyhedrovirus envelope fusion protein provides evidence for a phylogenetic division of the Baculoviridae
43. Nuclear polyhedrosis viruses
44. Relatedness of baculovirus and gypsy retrotransposon envelope proteins
45. Rare genomic changes as a tool for phylogenetics
46. Identification of the early actin-rearrangement-inducing factor gene, arif-1, from Autographa californica multicapsid nuclear polyhedrosis virus
47. Multiple comparisons of loglikelihoods with applications to phylogenetic inference
48. Genome phylogeny based on gene content
49. The genomic tree as revealed from whole proteome comparisons
50. Evidence for the derivation of the Drosophila fushi tarazu gene from a Hox gene orthologous to Iophotrochozoan Lox5
51. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
52. Genome rearrangement by replication-directed translocation
53. Transposon mutagenesis of baculoviruses - Analysis of Tfp3 lepidopteran transposon insertions at the fp locus of nuclear polyhedrosis
54. Granuloviruses
55. PAML: A program package for phylogenetic analysis by maximum likelihood
56. Phylogenetic interrelationships among baculoviruses: Evolutionary rates and host associations